Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46546 * 2 1 4 4 C 1.34905 * 116.99871 * 179.97438 * 3 2 1 5 5 O 1.21621 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.46471 * 120.00041 * 179.97438 * 4 3 2 7 7 C 1.36641 * 125.99392 * 179.97438 * 6 4 3 8 8 C 1.40308 * 106.70049 * 180.02562 * 7 6 4 9 9 C 1.35167 * 107.12666 * 0.02562 * 8 7 6 10 10 C 1.50695 * 125.60630 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47564 * 90.00045 * 10 9 8 12 12 C 1.46897 * 111.00586 * 175.54262 * 11 10 9 13 13 H 1.09000 * 109.46855 * 325.92672 * 12 11 10 14 14 C 1.50699 * 109.46905 * 205.93279 * 12 11 10 15 15 H 1.07993 * 120.00542 * 359.97438 * 14 12 11 16 16 C 1.37882 * 119.99724 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99848 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 119.99954 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47103 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47361 * 119.99466 * 18 16 14 21 21 H 1.48497 * 109.47208 * 239.99745 * 18 16 14 22 22 C 1.52993 * 109.47342 * 85.92687 * 12 11 10 23 23 C 1.52996 * 109.47028 * 59.82900 * 22 12 11 24 24 O 1.33912 * 108.78347 * 0.25962 * 9 8 7 25 25 H 1.08999 * 109.47480 * 299.99810 * 1 2 3 26 26 H 1.09000 * 109.47563 * 60.00002 * 1 2 3 27 27 H 1.09004 * 109.46591 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47157 * 240.00629 * 2 1 3 29 29 H 1.08994 * 109.47005 * 119.99583 * 2 1 3 30 30 H 1.08004 * 126.64764 * 0.02562 * 7 6 4 31 31 H 1.08003 * 126.43587 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.47588 * 329.99667 * 10 9 8 33 33 H 1.09004 * 109.47111 * 209.99548 * 10 9 8 34 34 H 1.00900 * 110.99695 * 51.57776 * 11 10 9 35 35 H 0.96998 * 119.99677 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47083 * 299.82843 * 22 12 11 37 37 H 1.08999 * 109.47308 * 179.83131 * 22 12 11 38 38 H 1.08998 * 109.47475 * 295.58912 * 23 22 12 39 39 H 1.09007 * 109.47174 * 175.58988 * 23 22 12 40 40 H 1.09004 * 109.47110 * 55.59203 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3513 1.5459 0.0005 5 8 4.0922 0.5814 0.0005 6 6 3.9110 2.8994 0.0000 7 6 5.2395 3.2190 0.0009 8 6 5.3172 4.6199 0.0005 9 6 4.0495 5.0889 0.0000 10 6 3.6517 6.5424 -0.0001 11 7 3.5231 7.0150 -1.3850 12 6 3.0337 8.3994 -1.4257 13 1 2.3411 8.5643 -0.6004 14 6 2.3245 8.6433 -2.7329 15 1 2.2456 7.8494 -3.4607 16 6 1.7773 9.8803 -2.9999 17 7 1.8738 10.8473 -2.1137 18 14 0.8989 10.1829 -4.6205 19 1 0.9281 8.9437 -5.4382 20 1 -0.5105 10.5682 -4.3552 21 1 1.5811 11.2773 -5.3565 22 6 4.2160 9.3622 -1.2995 23 6 5.1903 9.1278 -2.4556 24 8 3.2052 4.0495 0.0057 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 6.0690 2.5273 0.0018 31 1 6.2203 5.2123 0.0007 32 1 4.4139 7.1278 0.5142 33 1 2.6971 6.6578 0.5133 34 1 2.9254 6.4041 -1.9214 35 1 1.4885 11.7174 -2.3015 36 1 4.7270 9.1879 -0.3526 37 1 3.8532 10.3895 -1.3327 38 1 5.6129 8.1261 -2.3773 39 1 5.9921 9.8649 -2.4103 40 1 4.6601 9.2254 -3.4030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = -77.689056 kcal Electronic energy + Delta-G solvation = -21604.161178 eV Core-core repulsion = 18192.717934 eV Total energy + Delta-G solvation = -3411.443243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.67575 -40.31187 -36.83430 -36.49627 -33.38146 -32.85395 -32.02811 -31.12902 -29.65161 -26.97378 -25.13927 -23.62088 -23.15694 -22.28228 -21.53262 -20.38953 -19.14315 -18.50255 -17.18018 -16.95628 -16.59177 -15.95057 -15.19141 -14.95761 -14.37904 -14.20267 -13.92834 -13.51463 -13.36087 -13.20977 -12.93261 -12.90655 -12.59364 -12.21536 -12.19937 -11.88005 -11.66873 -11.60160 -11.01043 -10.97060 -10.80926 -10.78178 -10.46337 -10.18414 -10.01683 -9.81575 -9.46500 -8.88330 -8.59289 -8.50325 -7.45066 -6.08462 -4.14208 0.81452 2.19445 2.30985 2.85539 2.94940 3.25676 3.34294 3.38279 4.35673 4.52111 4.67048 4.71161 4.86683 4.90140 4.99203 5.21766 5.30864 5.37980 5.51948 5.56913 5.66985 5.71620 5.74344 5.93695 6.00778 6.14260 6.38321 6.46770 6.61164 6.78461 6.94781 7.14953 7.17026 7.39121 7.53932 7.66916 7.69695 7.75910 8.13072 8.24441 8.50229 8.92831 9.50941 10.97476 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.003664 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.639806 B = 7640.321937 C = 8698.362852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.347 6.347 4 C 0.559 3.441 5 O -0.497 6.497 6 C -0.087 4.087 7 C -0.096 4.096 8 C -0.216 4.216 9 C 0.061 3.939 10 C 0.129 3.871 11 N -0.678 5.678 12 C 0.215 3.785 13 H 0.005 0.995 14 C -0.514 4.514 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.104 4.104 23 C -0.121 4.121 24 O -0.150 6.150 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.337 0.663 35 H 0.261 0.739 36 H 0.011 0.989 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.014 0.986 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -15.754 5.812 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.264 6.264 4 C 0.404 3.596 5 O -0.387 6.387 6 C -0.137 4.137 7 C -0.116 4.116 8 C -0.235 4.235 9 C 0.008 3.992 10 C 0.000 4.000 11 N -0.311 5.311 12 C 0.109 3.891 13 H 0.023 0.977 14 C -0.553 4.553 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.143 4.143 23 C -0.178 4.178 24 O -0.045 6.045 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.308 -15.682 5.792 16.876 hybrid contribution -1.182 -0.041 -0.627 1.339 sum 1.126 -15.724 5.166 16.589 Atomic orbital electron populations 1.21821 0.92326 1.02994 1.03949 1.23104 0.95644 0.79605 1.02756 1.86699 1.23096 1.32658 1.83899 1.19168 0.80919 0.86561 0.72909 1.90918 1.60664 1.39849 1.47293 1.20522 0.90396 0.83771 1.19042 1.21964 0.94772 0.96295 0.98552 1.21598 0.98163 0.93613 1.10161 1.23370 0.88393 0.89682 0.97791 1.20674 1.01400 0.83140 0.94822 1.60911 1.56960 1.06260 1.06929 1.19230 0.91603 0.81614 0.96697 0.97707 1.21185 1.34561 0.97528 1.02014 0.92110 1.24874 0.95999 0.95995 0.96892 1.69883 1.45128 1.03162 1.34464 0.86494 0.79255 0.78309 0.83709 1.19729 1.21085 1.20949 1.21458 0.95637 1.02850 0.94309 1.21460 0.97272 0.98499 1.00598 1.84119 1.36957 1.13350 1.70073 0.91304 0.91187 0.90087 0.90930 0.91004 0.82112 0.82094 0.88019 0.93655 0.84583 0.92902 0.97041 0.89294 0.93924 0.96650 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.35 -4.69 10.23 -42.50 -0.43 -5.12 16 4 C 0.56 8.17 7.93 34.05 0.27 8.44 16 5 O -0.50 -7.69 16.66 -19.36 -0.32 -8.01 16 6 C -0.09 -1.32 7.18 -36.84 -0.26 -1.58 16 7 C -0.10 -1.29 10.62 -39.38 -0.42 -1.71 16 8 C -0.22 -2.97 10.77 -39.90 -0.43 -3.40 16 9 C 0.06 0.95 6.78 -35.40 -0.24 0.71 16 10 C 0.13 2.14 6.06 -4.98 -0.03 2.11 16 11 N -0.68 -13.46 5.64 -109.23 -0.62 -14.08 16 12 C 0.22 5.06 2.30 -68.87 -0.16 4.90 16 13 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 14 C -0.51 -13.32 7.26 -34.44 -0.25 -13.57 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 18 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.10 -2.38 5.59 -26.74 -0.15 -2.53 16 23 C -0.12 -2.59 9.52 37.16 0.35 -2.24 16 24 O -0.15 -2.45 10.67 4.75 0.05 -2.40 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 32 H 0.10 1.58 7.61 -51.93 -0.40 1.18 16 33 H 0.05 0.77 7.94 -51.93 -0.41 0.35 16 34 H 0.34 6.82 8.13 -39.29 -0.32 6.50 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.01 0.23 7.60 -51.93 -0.39 -0.16 16 37 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 38 H 0.04 0.86 7.74 -51.93 -0.40 0.46 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 1.34 7.07 -51.93 -0.37 0.97 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -28.44 341.94 -7.28 -35.73 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.92 Total: 3.89 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.80 Total: -7.16 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.01 Total: -37.75 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.71 Total: -15.52 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.44 -7.28 -35.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.962 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds