Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46869 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99509 * 2 1 3 5 5 O 1.42905 * 109.47264 * 175.00315 * 4 2 1 6 6 C 1.42901 * 114.00134 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47091 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47444 * 175.00243 * 7 6 5 9 9 N 1.46505 * 109.47181 * 295.00523 * 7 6 5 10 10 C 1.34775 * 119.99665 * 205.00204 * 9 7 6 11 11 O 1.21681 * 120.00390 * 359.97438 * 10 9 7 12 12 C 1.46382 * 119.99639 * 179.97438 * 10 9 7 13 13 H 1.07990 * 120.00084 * 359.97438 * 12 10 9 14 14 C 1.40047 * 119.99856 * 179.97438 * 12 10 9 15 15 N 1.30673 * 119.99894 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00203 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46871 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47136 * 119.99761 * 16 14 12 19 19 H 1.48504 * 109.46967 * 240.00128 * 16 14 12 20 20 C 1.50703 * 109.46935 * 55.00002 * 7 6 5 21 21 C 1.34517 * 125.78677 * 100.00296 * 20 7 6 22 22 C 1.41383 * 106.83829 * 179.97438 * 21 20 7 23 23 C 1.34513 * 106.84299 * 0.02562 * 22 21 20 24 24 O 1.34298 * 125.79082 * 279.69125 * 20 7 6 25 25 H 1.08998 * 109.47430 * 300.00143 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00815 * 1 2 3 27 27 H 1.09008 * 109.46731 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47430 * 239.99857 * 2 1 3 29 29 H 1.08999 * 109.46294 * 300.00128 * 3 2 1 30 30 H 1.08998 * 109.47211 * 59.99723 * 3 2 1 31 31 H 1.09000 * 109.47128 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47289 * 55.00149 * 4 2 1 33 33 H 1.09004 * 109.47261 * 295.00405 * 4 2 1 34 34 H 1.08994 * 109.47036 * 300.00109 * 6 5 4 35 35 H 1.09002 * 109.46796 * 60.00253 * 6 5 4 36 36 H 0.97001 * 119.99978 * 24.99372 * 9 7 6 37 37 H 0.97002 * 119.99659 * 179.97438 * 15 14 12 38 38 H 1.07995 * 126.57663 * 0.03418 * 21 20 7 39 39 H 1.08002 * 126.57847 * 179.97438 * 22 21 20 40 40 H 1.08002 * 125.79253 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 3.4643 -0.8236 1.1921 6 6 4.0452 -1.4843 2.3182 7 6 5.5650 -1.5370 2.1504 8 1 6.0152 -1.9605 3.0483 9 7 5.9001 -2.3731 0.9950 10 6 7.1018 -2.9796 0.9281 11 8 7.9086 -2.8324 1.8271 12 6 7.4365 -3.8154 -0.2260 13 1 6.7203 -3.9464 -1.0237 14 6 8.6854 -4.4453 -0.2959 15 7 9.5517 -4.2872 0.6695 16 14 9.1128 -5.5114 -1.7691 17 1 7.9695 -5.5276 -2.7166 18 1 10.3111 -4.9580 -2.4495 19 1 9.3977 -6.8954 -1.3124 20 6 6.0948 -0.1431 1.9323 21 6 6.6688 0.6355 2.8671 22 6 7.0144 1.8506 2.2323 23 6 6.6304 1.7421 0.9477 24 8 6.0794 0.5301 0.7704 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6765 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4427 -0.0005 32 1 1.6055 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 3.7984 -0.9368 3.2277 35 1 3.6522 -2.4987 2.3867 36 1 5.2571 -2.4902 0.2783 37 1 10.4166 -4.7237 0.6213 38 1 6.8347 0.3808 3.9034 39 1 7.4938 2.7027 2.6909 40 1 6.7499 2.4990 0.1866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184687179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = -83.011991 kcal Electronic energy + Delta-G solvation = -22572.556850 eV Core-core repulsion = 19160.882787 eV Total energy + Delta-G solvation = -3411.674063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.88617 -38.43567 -37.20694 -35.25081 -33.52429 -32.38425 -32.23330 -29.85605 -27.72704 -27.19340 -26.22391 -25.45675 -22.62561 -21.16286 -20.34948 -20.17595 -19.24228 -17.35472 -16.94632 -16.37947 -16.04609 -15.43797 -15.21338 -14.85962 -14.63041 -14.08034 -13.98448 -13.56903 -12.93318 -12.81888 -12.57688 -12.33288 -12.20854 -12.19238 -12.03195 -11.84109 -11.60594 -11.21539 -11.10262 -10.97558 -10.91666 -10.84972 -10.57189 -10.43251 -10.17399 -9.45842 -9.29332 -8.85037 -7.92693 -7.60556 -7.57905 -6.17005 -4.61796 2.39589 3.14761 3.19594 3.23196 3.27886 3.63256 3.76339 4.12677 4.59644 4.77354 4.80657 4.85330 5.07550 5.12147 5.33795 5.41025 5.42878 5.52297 5.56151 5.58887 5.65106 5.69188 5.74842 5.78893 5.88941 5.93636 6.00116 6.10483 6.25221 6.36004 6.37722 6.46077 6.68989 7.06196 7.34889 7.46025 7.78034 7.94123 8.08515 8.35433 9.04779 9.52965 10.60825 10.78993 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.005117 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.329458 B = 5470.896671 C = 6445.696772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.066 3.934 5 O -0.371 6.371 6 C 0.058 3.942 7 C 0.235 3.765 8 H 0.117 0.883 9 N -0.752 5.752 10 C 0.555 3.445 11 O -0.577 6.577 12 C -0.541 4.541 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.024 3.976 21 C -0.228 4.228 22 C -0.216 4.216 23 C -0.060 4.060 24 O -0.151 6.151 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.267 0.733 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 9.175 0.710 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.011 4.011 5 O -0.290 6.290 6 C -0.019 4.019 7 C 0.127 3.873 8 H 0.135 0.865 9 N -0.407 5.407 10 C 0.359 3.641 11 O -0.459 6.459 12 C -0.578 4.578 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.732 3.268 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.030 4.030 21 C -0.248 4.248 22 C -0.235 4.235 23 C -0.129 4.129 24 O -0.045 6.045 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.993 9.174 1.021 16.764 hybrid contribution 0.026 -0.376 -0.620 0.725 sum -13.967 8.798 0.402 16.512 Atomic orbital electron populations 1.21784 0.94712 1.01797 1.01931 1.21071 0.95000 0.97034 0.98206 1.21768 1.02466 0.94965 1.00825 1.22529 0.82007 0.98831 0.97720 1.88003 1.19117 1.78896 1.42971 1.22873 0.93008 0.96808 0.89195 1.19247 0.90716 0.83088 0.94249 0.86531 1.46196 1.19940 1.52552 1.22014 1.18291 0.78905 0.79201 0.87707 1.90605 1.48329 1.65806 1.41207 1.20891 1.01121 1.30564 1.05203 0.91331 1.25701 0.95700 0.95481 0.96311 1.70035 1.05383 1.34383 1.29788 0.86326 0.79009 0.79700 0.81791 1.18746 1.20191 1.20171 1.23092 1.01519 0.95259 0.83084 1.21440 1.07275 0.95237 1.00831 1.21641 1.07272 0.99785 0.94799 1.23841 1.03221 0.87538 0.98259 1.84074 1.62222 1.23984 1.34263 0.92740 0.92207 0.92607 0.90219 0.93145 0.93282 0.91402 0.93603 0.93821 0.92568 0.91965 0.77869 0.92199 0.84253 0.84402 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.09 -1.02 3.16 -90.62 -0.29 -1.30 16 3 C -0.14 -1.58 9.09 37.16 0.34 -1.24 16 4 C 0.07 0.78 5.32 37.16 0.20 0.97 16 5 O -0.37 -5.65 8.99 -35.23 -0.32 -5.97 16 6 C 0.06 0.88 5.67 37.16 0.21 1.09 16 7 C 0.23 4.60 2.83 -69.08 -0.20 4.40 16 8 H 0.12 2.40 7.57 -51.93 -0.39 2.01 16 9 N -0.75 -17.23 5.03 -56.34 -0.28 -17.51 16 10 C 0.55 15.89 7.70 -12.98 -0.10 15.79 16 11 O -0.58 -18.63 14.68 5.21 0.08 -18.55 16 12 C -0.54 -15.50 9.54 -35.63 -0.34 -15.84 16 13 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -23.21 11.83 55.55 0.66 -22.56 16 16 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 17 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.02 0.48 5.67 -35.62 -0.20 0.28 16 21 C -0.23 -4.30 10.80 -39.70 -0.43 -4.73 16 22 C -0.22 -3.65 10.91 -39.70 -0.43 -4.09 16 23 C -0.06 -1.02 12.09 29.42 0.36 -0.67 16 24 O -0.15 -3.08 10.52 5.71 0.06 -3.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.91 7.82 -51.93 -0.41 0.51 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.39 8.25 8.36 -40.82 -0.34 7.91 16 37 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 38 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 39 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -35.25 344.90 -6.45 -41.71 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.18 Total: 9.11 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.64 Total: -3.81 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.37 Total: -40.07 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.18 Total: -27.53 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.25 -6.45 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184687179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.304 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds