Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.50702 * 120.00204 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.46937 * 5.00335 * 4 2 1 6 6 N 1.46901 * 109.47213 * 124.99711 * 4 2 1 7 7 C 1.46897 * 111.00153 * 275.00777 * 6 4 2 8 8 C 1.53000 * 109.46843 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.46755 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00240 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99961 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99720 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00170 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47052 * 59.99669 * 13 11 9 15 15 H 1.48500 * 109.47078 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46890 * 299.99600 * 13 11 9 17 17 C 1.50693 * 109.47414 * 245.00258 * 4 2 1 18 18 C 1.38257 * 119.96637 * 99.99876 * 17 4 2 19 19 C 1.38214 * 120.07045 * 179.97438 * 18 17 4 20 20 C 1.38404 * 120.00148 * 0.02562 * 19 18 17 21 21 F 1.35103 * 120.03829 * 180.02562 * 20 19 18 22 22 C 1.38647 * 119.92983 * 359.97438 * 20 19 18 23 23 F 1.35106 * 120.03539 * 179.97438 * 22 20 19 24 24 C 1.38213 * 119.96720 * 279.72557 * 17 4 2 25 25 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 27 27 H 1.09005 * 109.46474 * 359.97438 * 3 2 1 28 28 H 1.08992 * 109.47395 * 119.99834 * 3 2 1 29 29 H 1.09002 * 109.46494 * 239.99972 * 3 2 1 30 30 H 1.00901 * 110.99477 * 38.96312 * 6 4 2 31 31 H 1.09003 * 109.46906 * 299.99371 * 7 6 4 32 32 H 1.08995 * 109.47315 * 59.99854 * 7 6 4 33 33 H 1.09003 * 109.46683 * 299.99295 * 8 7 6 34 34 H 1.08995 * 109.47457 * 59.99728 * 8 7 6 35 35 H 0.96999 * 119.99855 * 179.97438 * 12 11 9 36 36 H 1.08002 * 119.96612 * 359.97438 * 18 17 4 37 37 H 1.08008 * 119.99558 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.99826 * 359.97438 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 -0.0887 6 7 2.9963 -1.3325 -1.1340 7 6 2.3248 -1.7931 -2.3566 8 6 3.3261 -1.8087 -3.5133 9 6 2.6373 -2.2819 -4.7674 10 1 1.5904 -2.5454 -4.7419 11 6 3.3439 -2.3783 -5.9475 12 7 4.6188 -2.0568 -5.9787 13 14 2.4901 -2.9640 -7.5023 14 1 1.3705 -2.0446 -7.8285 15 1 3.4616 -2.9782 -8.6252 16 1 1.9592 -4.3345 -7.2891 17 6 2.8346 -1.4394 1.2883 18 6 2.3349 -2.2197 2.3143 19 6 3.0406 -2.3448 3.4961 20 6 4.2487 -1.6881 3.6536 21 9 4.9394 -1.8103 4.8082 22 6 4.7499 -0.9056 2.6246 23 9 5.9288 -0.2632 2.7762 24 6 4.0435 -0.7869 1.4403 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9354 0.0044 27 1 1.3551 2.1336 -0.0005 28 1 2.6902 1.3629 0.8899 29 1 2.6902 1.3627 -0.8900 30 1 3.4220 -0.4284 -1.2738 31 1 1.9352 -2.7990 -2.2002 32 1 1.5030 -1.1183 -2.5960 33 1 3.7160 -0.8030 -3.6699 34 1 4.1476 -2.4838 -3.2737 35 1 5.1160 -2.1250 -6.8088 36 1 1.3920 -2.7321 2.1923 37 1 2.6488 -2.9544 4.2970 38 1 4.4352 -0.1815 0.6363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187786577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = -58.258044 kcal Electronic energy + Delta-G solvation = -21354.185939 eV Core-core repulsion = 17832.497772 eV Total energy + Delta-G solvation = -3521.688167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.49570 -48.57185 -39.71275 -37.14282 -34.20547 -32.62109 -31.24152 -30.85335 -28.84179 -27.51681 -25.50115 -23.79080 -22.97737 -21.73885 -20.61698 -18.80530 -17.93673 -17.15215 -16.97755 -16.36513 -16.30442 -15.68618 -14.99664 -14.98604 -14.55193 -14.49938 -14.39996 -14.09111 -13.74435 -13.19998 -13.11479 -12.79696 -12.74099 -12.28720 -12.05513 -11.77637 -11.66039 -11.37374 -11.24224 -11.01938 -10.94001 -10.59620 -10.09760 -9.53060 -9.25750 -9.14649 -9.05989 -8.67873 -8.38054 -7.99360 -6.02225 -4.05169 0.82346 0.93323 2.18109 3.27645 3.31635 3.36434 3.38342 3.72052 4.26270 4.31631 4.45780 4.48006 4.74870 4.77171 4.89477 5.08542 5.11930 5.33836 5.40672 5.54898 5.59887 5.68704 5.77052 5.78415 5.81846 5.90566 5.92930 6.24691 6.31534 6.32478 6.52362 6.66654 6.73712 6.90886 7.34789 7.64498 7.72150 7.85343 8.02899 8.39133 9.01625 9.58789 11.09091 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.003672 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.187612 B = 7622.544431 C = 8146.295630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C -0.124 4.124 4 C 0.157 3.843 5 H 0.095 0.905 6 N -0.678 5.678 7 C 0.066 3.934 8 C 0.026 3.974 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.035 4.035 18 C -0.096 4.096 19 C -0.126 4.126 20 C 0.056 3.944 21 F -0.134 7.134 22 C 0.067 3.933 23 F -0.131 7.131 24 C -0.102 4.102 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.339 0.661 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.013 0.987 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.682 3.557 18.674 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.151 4.151 3 C -0.181 4.181 4 C 0.046 3.954 5 H 0.113 0.887 6 N -0.308 5.308 7 C -0.061 4.061 8 C -0.012 4.012 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.036 4.036 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.036 3.964 21 F -0.113 7.113 22 C 0.047 3.953 23 F -0.109 7.109 24 C -0.121 4.121 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.177 2.956 18.727 19.653 hybrid contribution -0.565 0.533 -0.924 1.207 sum -5.742 3.489 17.803 19.029 Atomic orbital electron populations 1.23721 0.94975 1.01896 1.01439 1.22394 0.95966 0.96370 1.00329 1.20893 1.00574 0.94207 1.02389 1.19604 0.92298 0.94548 0.88923 0.88698 1.60846 1.31483 1.33278 1.05207 1.22212 0.96982 0.98290 0.88658 1.19060 0.94220 0.97442 0.90437 1.21110 0.96339 1.44821 0.93907 0.92801 1.24994 0.94834 0.95441 0.98994 1.69960 1.07675 1.48348 1.27180 0.86652 0.79249 0.79343 0.82711 1.20292 1.21257 1.20206 1.19738 0.93792 0.94746 0.95290 1.20936 1.00270 0.98395 0.91907 1.20982 0.93240 1.00662 0.99580 1.17673 0.93617 1.02269 0.82887 1.91506 1.78723 1.94756 1.46282 1.17691 0.84498 0.97860 0.95297 1.91526 1.43914 1.79507 1.95988 1.20928 0.94780 1.01072 0.95358 0.88391 0.88449 0.91795 0.91430 0.91135 0.84181 0.92177 0.96111 0.96844 0.95608 0.92899 0.84414 0.83895 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 13.92 29.02 0.40 -1.57 16 2 C -0.15 -1.75 4.78 -101.06 -0.48 -2.24 16 3 C -0.12 -1.34 9.20 36.01 0.33 -1.01 16 4 C 0.16 2.02 2.44 -70.02 -0.17 1.85 16 5 H 0.09 1.20 7.31 -51.93 -0.38 0.82 16 6 N -0.68 -11.01 5.69 -109.19 -0.62 -11.63 16 7 C 0.07 1.31 5.42 -3.83 -0.02 1.29 16 8 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 9 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 13 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.03 -0.41 4.88 -104.63 -0.51 -0.92 16 18 C -0.10 -0.97 9.66 -39.58 -0.38 -1.35 16 19 C -0.13 -1.25 10.02 -39.53 -0.40 -1.65 16 20 C 0.06 0.68 7.31 -39.37 -0.29 0.39 16 21 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 22 C 0.07 0.87 7.31 -39.37 -0.29 0.58 16 23 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 24 C -0.10 -1.28 7.85 -39.53 -0.31 -1.59 16 25 H 0.10 0.98 7.84 -52.49 -0.41 0.57 16 26 H 0.10 0.94 7.83 -52.48 -0.41 0.53 16 27 H 0.06 0.62 7.78 -51.93 -0.40 0.21 16 28 H 0.07 0.68 6.92 -51.93 -0.36 0.32 16 29 H 0.07 0.81 6.98 -51.93 -0.36 0.45 16 30 H 0.34 5.33 6.26 -39.29 -0.25 5.08 16 31 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 32 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.14 1.07 8.04 -52.49 -0.42 0.65 16 37 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.15 1.80 7.10 -52.49 -0.37 1.43 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -29.97 329.31 -7.55 -37.52 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.01 Total: 1.11 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.67 Total: -18.98 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.11 Total: -37.50 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.97 -7.55 -37.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187786577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.741 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds