Wall clock time and date at job start Tue Mar 31 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31743 * 123.76846 * 2 1 4 4 N 1.27577 * 118.27707 * 179.97438 * 3 2 1 5 5 S 1.56517 * 109.21636 * 359.70001 * 4 3 2 6 6 C 1.35349 * 123.76936 * 179.97438 * 2 1 3 7 7 C 1.50704 * 127.91798 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.46923 * 90.00251 * 7 6 2 9 9 C 1.46847 * 110.99897 * 169.99458 * 8 7 6 10 10 C 1.53034 * 109.51345 * 174.16738 * 9 8 7 11 11 C 1.53099 * 109.29509 * 59.18740 * 10 9 8 12 12 C 1.52993 * 109.52781 * 182.43453 * 11 10 9 13 13 C 1.50699 * 109.47187 * 294.67655 * 12 11 10 14 14 H 1.07994 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99439 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00836 * 0.02562 * 15 13 12 17 17 Si 1.86810 * 119.99406 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47146 * 90.00227 * 17 15 13 19 19 H 1.48500 * 109.46739 * 209.99951 * 17 15 13 20 20 H 1.48503 * 109.47013 * 329.99943 * 17 15 13 21 21 C 1.53126 * 109.15071 * 302.33888 * 11 10 9 22 22 C 1.46854 * 110.99958 * 45.78597 * 8 7 6 23 23 H 1.09001 * 109.47065 * 270.02733 * 1 2 3 24 24 H 1.08994 * 109.47343 * 30.02259 * 1 2 3 25 25 H 1.09000 * 109.47041 * 150.03136 * 1 2 3 26 26 H 1.08992 * 109.47568 * 330.00011 * 7 6 2 27 27 H 1.09001 * 109.46476 * 209.99995 * 7 6 2 28 28 H 1.09002 * 109.46481 * 294.17890 * 9 8 7 29 29 H 1.08994 * 109.46283 * 54.15743 * 9 8 7 30 30 H 1.09007 * 109.50453 * 179.12106 * 10 9 8 31 31 H 1.09009 * 109.50412 * 299.23146 * 10 9 8 32 32 H 1.09002 * 109.57693 * 62.27167 * 11 10 9 33 33 H 1.09004 * 109.47084 * 54.67770 * 12 11 10 34 34 H 1.09001 * 109.46990 * 174.67248 * 12 11 10 35 35 H 0.97004 * 120.00513 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.50076 * 297.71308 * 21 11 10 37 37 H 1.08998 * 109.53581 * 177.61293 * 21 11 10 38 38 H 1.08993 * 109.46229 * 305.85774 * 22 8 7 39 39 H 1.09008 * 109.45803 * 65.83386 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5092 0.9731 0.0005 5 16 3.8805 -0.5474 0.0088 6 6 2.2593 -1.1251 0.0005 7 6 1.7858 -2.5558 0.0006 8 7 1.6325 -3.0210 -1.3843 9 6 1.4036 -4.4707 -1.4303 10 6 1.1048 -4.8957 -2.8697 11 6 2.2885 -4.5188 -3.7646 12 6 1.9704 -4.8863 -5.2152 13 6 1.8477 -6.3832 -5.3389 14 1 1.9835 -7.0097 -4.4698 15 6 1.5631 -6.9528 -6.5618 16 7 1.3993 -6.1900 -7.6204 17 14 1.4104 -8.8083 -6.7149 18 1 0.0004 -9.2101 -6.4788 19 1 1.8229 -9.2281 -8.0783 20 1 2.2864 -9.4618 -5.7095 21 6 2.5364 -3.0113 -3.6611 22 6 2.7939 -2.6407 -2.1988 23 1 -0.3633 0.0005 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8903 -0.5133 26 1 0.8266 -2.6211 0.5140 27 1 2.5164 -3.1802 0.5149 28 1 2.2937 -4.9904 -1.0755 29 1 0.5565 -4.7250 -0.7933 30 1 0.9503 -5.9742 -2.9062 31 1 0.2069 -4.3869 -3.2205 32 1 3.1785 -5.0574 -3.4391 33 1 1.0310 -4.4191 -5.5108 34 1 2.7719 -4.5326 -5.8638 35 1 1.1987 -6.5908 -8.4807 36 1 1.6610 -2.4729 -4.0242 37 1 3.4045 -2.7425 -4.2629 38 1 2.9566 -1.5659 -2.1197 39 1 3.6774 -3.1691 -1.8404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259893231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:30 Heat of formation + Delta-G solvation = 54.243685 kcal Electronic energy + Delta-G solvation = -19909.444009 eV Core-core repulsion = 16978.767421 eV Total energy + Delta-G solvation = -2930.676588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11390 -38.93097 -35.28683 -33.40184 -32.18370 -30.57444 -29.52133 -27.57961 -26.86948 -25.06847 -23.26863 -22.70085 -20.99119 -20.06379 -19.11032 -18.65286 -16.50855 -16.28700 -15.64828 -15.27128 -14.63855 -14.50967 -14.39742 -13.71779 -13.50973 -13.21243 -13.14309 -12.93311 -12.57777 -12.26815 -12.13274 -12.09541 -11.66339 -11.39346 -11.16181 -10.88154 -10.73630 -10.67228 -10.33614 -10.25897 -10.07269 -9.74697 -9.70358 -9.55123 -9.10193 -8.90070 -8.35080 -8.26767 -5.99014 -4.00896 0.03448 0.90930 1.53656 2.05230 3.30902 3.37739 3.40005 3.90053 3.97115 4.39532 4.45647 4.51972 5.09141 5.18260 5.20753 5.29394 5.35430 5.38033 5.38590 5.47595 5.57849 5.61674 5.75496 5.85505 5.92308 6.03145 6.13155 6.35043 6.47726 6.58897 6.90037 6.99966 7.12388 7.15718 7.21921 7.60925 7.68415 7.84190 8.01230 8.43802 9.05703 9.62805 11.12267 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.035882 B = 0.003523 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.144060 B = 7945.997601 C = 8078.463266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.038 3.962 3 N -0.241 5.241 4 N -0.289 5.289 5 S 0.412 5.588 6 C -0.249 4.249 7 C 0.136 3.864 8 N -0.528 5.528 9 C 0.056 3.944 10 C -0.099 4.099 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.110 4.110 22 C 0.052 3.948 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 8.656 17.779 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 N -0.109 5.109 4 N -0.268 5.268 5 S 0.549 5.451 6 C -0.388 4.388 7 C 0.006 3.994 8 N -0.254 5.254 9 C -0.071 4.071 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.009 4.009 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.148 4.148 22 C -0.076 4.076 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.167 10.002 17.403 20.189 hybrid contribution -0.720 -1.942 0.086 2.073 sum 1.447 8.060 17.490 19.312 Atomic orbital electron populations 1.20328 0.84793 1.04756 1.03232 1.22240 1.00393 0.86346 1.01667 1.71221 0.96734 1.27878 1.15058 1.78860 1.10530 1.14863 1.22551 1.81554 1.09813 1.01721 1.52048 1.26912 0.98927 1.02358 1.10572 1.20433 1.01166 0.85923 0.91899 1.62163 1.40259 1.15462 1.07482 1.22257 0.99766 0.85183 0.99862 1.21553 0.99328 1.01495 0.91338 1.21240 0.96892 0.92539 0.99328 1.19111 0.96815 0.96111 0.88856 1.21238 1.47700 0.92267 0.94170 0.92697 1.25015 0.95601 0.97773 0.96044 1.69958 1.48929 1.34869 0.99736 0.86660 0.78301 0.86119 0.77304 1.20708 1.21312 1.19956 1.21682 1.01695 0.98457 0.92988 1.22289 0.90718 0.99160 0.95478 0.90321 0.90137 0.88991 0.88254 0.93090 0.95023 0.91131 0.90587 0.91672 0.92940 0.96498 0.96771 0.93063 0.91538 0.92030 0.92401 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.01 36.00 0.36 -0.26 16 2 C 0.04 0.44 6.89 -83.66 -0.58 -0.13 16 3 N -0.24 -3.30 11.68 32.45 0.38 -2.92 16 4 N -0.29 -3.87 12.54 60.35 0.76 -3.11 16 5 S 0.41 4.34 21.92 -107.50 -2.36 1.99 16 6 C -0.25 -2.68 4.56 -35.34 -0.16 -2.84 16 7 C 0.14 1.35 5.39 -4.98 -0.03 1.32 16 8 N -0.53 -6.75 4.80 -236.11 -1.13 -7.88 16 9 C 0.06 0.75 5.43 -3.84 -0.02 0.73 16 10 C -0.10 -1.72 5.15 -26.66 -0.14 -1.86 16 11 C -0.08 -1.58 2.20 -90.51 -0.20 -1.78 16 12 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 13 C -0.52 -14.03 8.44 -34.44 -0.29 -14.32 16 14 H 0.05 1.44 7.08 -52.49 -0.37 1.07 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.11 -1.86 5.38 -26.65 -0.14 -2.01 16 22 C 0.05 0.72 4.79 -3.83 -0.02 0.70 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 26 H 0.10 0.83 7.76 -51.93 -0.40 0.42 16 27 H 0.05 0.45 8.08 -51.93 -0.42 0.04 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.08 1.40 7.05 -51.93 -0.37 1.04 16 31 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.78 5.55 -51.93 -0.29 0.50 16 39 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -30.64 324.30 -9.22 -39.86 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -6.03 Total: -4.77 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.43 Total: -18.38 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.74 Total: -39.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.36 Total: 1.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.64 -9.22 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.099 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds