Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46964 * 2 1 4 4 N 1.29026 * 124.91477 * 89.96386 * 3 2 1 5 5 C 1.31790 * 117.12540 * 179.74827 * 4 3 2 6 6 C 1.33636 * 114.49465 * 0.52017 * 5 4 3 7 7 C 1.50702 * 126.03458 * 179.79010 * 6 5 4 8 8 N 1.46898 * 109.47413 * 89.71499 * 7 6 5 9 9 C 1.46903 * 111.00133 * 190.00079 * 8 7 6 10 10 C 1.53230 * 109.33899 * 187.25239 * 9 8 7 11 11 N 1.47080 * 108.52531 * 306.16795 * 10 9 8 12 12 C 1.36931 * 120.88364 * 231.18821 * 11 10 9 13 13 H 1.07994 * 120.00368 * 26.84029 * 12 11 10 14 14 C 1.38812 * 119.99721 * 206.56279 * 12 11 10 15 15 N 1.31619 * 120.00606 * 17.47328 * 14 12 11 16 16 Si 1.86807 * 119.99780 * 197.47555 * 14 12 11 17 17 H 1.48504 * 109.46947 * 94.38387 * 16 14 12 18 18 H 1.48508 * 109.46899 * 214.38152 * 16 14 12 19 19 H 1.48495 * 109.47303 * 334.38014 * 16 14 12 20 20 C 1.47082 * 118.23403 * 51.45931 * 11 10 9 21 21 C 1.46904 * 110.99940 * 314.30418 * 8 7 6 22 22 S 1.70980 * 124.91727 * 270.00130 * 3 2 1 23 23 H 1.08996 * 109.47477 * 59.99443 * 1 2 3 24 24 H 1.08996 * 109.46964 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46419 * 299.99811 * 1 2 3 26 26 H 1.09005 * 109.47093 * 240.00513 * 2 1 3 27 27 H 1.08996 * 109.47477 * 120.00557 * 2 1 3 28 28 H 1.07994 * 122.74884 * 180.33416 * 5 4 3 29 29 H 1.09004 * 109.47227 * 329.71162 * 7 6 5 30 30 H 1.09004 * 109.47144 * 209.71908 * 7 6 5 31 31 H 1.09001 * 109.49186 * 67.29185 * 9 8 7 32 32 H 1.09000 * 109.51153 * 307.22921 * 9 8 7 33 33 H 1.09004 * 109.63143 * 186.45915 * 10 9 8 34 34 H 1.09004 * 109.63158 * 65.88032 * 10 9 8 35 35 H 0.96993 * 120.00972 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.63087 * 68.24805 * 20 11 10 37 37 H 1.08996 * 109.63194 * 188.83501 * 20 11 10 38 38 H 1.09005 * 109.48966 * 292.70358 * 21 8 7 39 39 H 1.08993 * 109.49068 * 52.75434 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2778 2.1173 1.0580 5 6 2.7180 3.3466 0.8794 6 6 2.8408 3.7107 -0.4005 7 6 3.3143 5.0516 -0.8993 8 7 4.7740 5.0262 -1.0615 9 6 5.2990 6.3744 -1.3163 10 6 6.7899 6.2822 -1.6580 11 7 7.4705 5.5425 -0.5843 12 6 8.5881 6.0520 0.0211 13 1 8.7432 7.1201 0.0573 14 6 9.5188 5.1957 0.5933 15 7 9.5248 3.9196 0.2707 16 14 10.7630 5.8545 1.8212 17 1 10.2464 5.6631 3.2002 18 1 12.0459 5.1225 1.6670 19 1 10.9857 7.3014 1.5723 20 6 6.9224 4.2381 -0.1823 21 6 5.4228 4.4134 0.1054 22 16 2.3585 2.3435 -1.4020 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.9569 4.0066 1.7001 29 1 3.0420 5.8238 -0.1797 30 1 2.8457 5.2684 -1.8593 31 1 5.1671 6.9902 -0.4267 32 1 4.7613 6.8225 -2.1519 33 1 7.2105 7.2848 -1.7354 34 1 6.9170 5.7548 -2.6035 35 1 10.1754 3.3214 0.6702 36 1 7.0618 3.5181 -0.9886 37 1 7.4305 3.8887 0.7165 38 1 5.2892 5.0566 0.9752 39 1 4.9745 3.4394 0.3009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264336230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = 73.064924 kcal Electronic energy + Delta-G solvation = -19960.281422 eV Core-core repulsion = 17030.420984 eV Total energy + Delta-G solvation = -2929.860438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83742 -38.02886 -34.91135 -33.84448 -31.71039 -29.97742 -29.78675 -27.20492 -25.62553 -24.08596 -22.71452 -22.55689 -21.97924 -19.24536 -19.08327 -17.85852 -16.76239 -15.54580 -15.36538 -14.73708 -14.66320 -14.42980 -14.27556 -13.82422 -13.63711 -13.41990 -13.10169 -13.05104 -12.42515 -12.37094 -11.99129 -11.80211 -11.43795 -11.30515 -11.14492 -11.00193 -10.75240 -10.49341 -10.31839 -10.07806 -9.77451 -9.62764 -9.51140 -9.15878 -8.70019 -8.49634 -7.83586 -6.66834 -5.77086 -3.18458 0.75264 1.40275 1.84355 2.88292 3.38519 3.45416 3.46852 4.10503 4.42901 4.51975 4.81321 4.90379 5.01508 5.05675 5.23725 5.39922 5.43887 5.46588 5.58457 5.59333 5.72198 5.81786 5.89404 5.92717 5.97121 6.12252 6.21788 6.25956 6.32718 6.53677 6.69444 6.91699 7.23885 7.51788 7.63961 7.69832 7.80035 7.82448 8.44134 9.21810 9.85385 10.43897 11.31606 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.004204 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.765653 B = 6658.868965 C = 7269.989511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.034 3.966 4 N -0.471 5.471 5 C 0.037 3.963 6 C -0.203 4.203 7 C 0.127 3.873 8 N -0.527 5.527 9 C 0.045 3.955 10 C 0.149 3.851 11 N -0.596 5.596 12 C -0.253 4.253 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.180 3.820 21 C 0.033 3.967 22 S 0.138 5.862 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.171 0.829 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.254 0.746 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 -4.029 -2.891 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.243 4.243 4 N -0.185 5.185 5 C -0.115 4.115 6 C -0.324 4.324 7 C -0.003 4.003 8 N -0.253 5.253 9 C -0.085 4.085 10 C 0.022 3.978 11 N -0.319 5.319 12 C -0.382 4.382 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.054 3.946 21 C -0.096 4.096 22 S 0.393 5.607 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.188 0.812 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.884 -4.866 -3.798 18.919 hybrid contribution 0.769 1.378 2.132 2.652 sum -17.115 -3.488 -1.667 17.546 Atomic orbital electron populations 1.21761 0.93763 1.02317 1.02548 1.20181 0.96465 0.87846 1.04209 1.26995 1.04055 1.01856 0.91434 1.66241 1.14541 1.05981 1.31746 1.21666 1.01507 0.92459 0.95868 1.25840 1.09144 1.01428 0.96026 1.20509 0.90486 0.89252 1.00015 1.62184 1.01138 1.21477 1.40484 1.22657 0.98716 0.87990 0.99113 1.20964 0.88930 0.96121 0.91739 1.44162 1.29537 1.19834 1.38349 1.19209 0.97407 0.91338 1.30277 0.91592 1.25023 0.97368 0.96046 1.01258 1.70031 1.37257 1.03648 1.43774 0.86276 0.80682 0.78226 0.81611 1.21527 1.21737 1.20414 1.20940 0.86395 0.87032 1.00218 1.23082 0.99137 0.97566 0.89859 1.83881 1.59462 1.05320 1.12012 0.92466 0.91560 0.92064 0.89735 0.88921 0.81241 0.93274 0.90085 0.95194 0.91880 0.92485 0.95643 0.93618 0.95665 0.89397 0.95709 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.05 -0.43 6.52 -27.88 -0.18 -0.62 16 3 C 0.03 0.44 6.64 -13.46 -0.09 0.35 16 4 N -0.47 -7.09 10.54 -11.86 -0.13 -7.21 16 5 C 0.04 0.55 9.53 -19.18 -0.18 0.36 16 6 C -0.20 -2.91 4.78 -35.92 -0.17 -3.09 16 7 C 0.13 1.83 5.81 -4.98 -0.03 1.80 16 8 N -0.53 -9.45 4.77 -235.46 -1.12 -10.58 16 9 C 0.04 0.79 5.58 -3.70 -0.02 0.77 16 10 C 0.15 3.19 6.69 -3.61 -0.02 3.17 16 11 N -0.60 -15.33 3.03 -171.74 -0.52 -15.85 16 12 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 13 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 14 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 15 N -0.90 -26.66 11.16 55.49 0.62 -26.04 16 16 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.18 4.49 5.45 -3.36 -0.02 4.47 16 21 C 0.03 0.66 4.96 -3.46 -0.02 0.64 16 22 S 0.14 1.75 23.18 -107.50 -2.49 -0.74 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.43 6.11 -51.93 -0.32 2.12 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.24 5.55 -51.93 -0.29 0.95 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -31.04 325.47 -10.42 -41.47 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.06 Total: -2.76 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.60 Total: -0.12 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.15 Total: -59.67 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.49 Total: -0.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.04 -10.42 -41.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264336230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.532 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds