Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.46905 * 2 1 4 4 O 1.33915 * 125.60800 * 275.37711 * 3 2 1 5 5 C 1.34934 * 109.38442 * 180.02562 * 4 3 2 6 6 C 1.46468 * 125.99938 * 180.02562 * 5 4 3 7 7 O 1.21623 * 119.99795 * 179.97438 * 6 5 4 8 8 O 1.34898 * 120.00076 * 359.97438 * 6 5 4 9 9 C 1.45193 * 117.00266 * 179.97438 * 8 6 5 10 10 C 1.36645 * 108.00483 * 0.02562 * 5 4 3 11 11 C 1.35171 * 125.61381 * 95.38806 * 3 2 1 12 12 C 1.50700 * 126.43075 * 359.97438 * 11 3 2 13 13 N 1.46499 * 109.46862 * 83.07075 * 12 11 3 14 14 C 1.36938 * 119.99670 * 263.15958 * 13 12 11 15 15 H 1.07998 * 120.00094 * 6.46125 * 14 13 12 16 16 C 1.38808 * 119.99824 * 186.45378 * 14 13 12 17 17 N 1.31624 * 120.00065 * 29.51654 * 16 14 13 18 18 Si 1.86802 * 120.00117 * 209.51290 * 16 14 13 19 19 H 1.48502 * 109.47191 * 94.99344 * 18 16 14 20 20 H 1.48499 * 109.47245 * 214.99489 * 18 16 14 21 21 H 1.48495 * 109.47036 * 334.99216 * 18 16 14 22 22 C 1.46503 * 120.00260 * 83.16759 * 13 12 11 23 23 C 1.52997 * 109.47225 * 84.14961 * 22 13 12 24 24 H 1.09003 * 109.46623 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46868 * 299.99962 * 1 2 3 26 26 H 1.08996 * 109.46922 * 60.00491 * 1 2 3 27 27 H 1.08996 * 109.47143 * 239.99541 * 2 1 3 28 28 H 1.08999 * 109.47375 * 119.99724 * 2 1 3 29 29 H 1.09002 * 109.47522 * 300.00540 * 9 8 6 30 30 H 1.09001 * 109.46918 * 59.99984 * 9 8 6 31 31 H 1.08998 * 109.47269 * 179.97438 * 9 8 6 32 32 H 1.07998 * 126.64779 * 180.25844 * 10 5 4 33 33 H 1.09005 * 109.46405 * 203.06866 * 12 11 3 34 34 H 1.09001 * 109.47305 * 323.06387 * 12 11 3 35 35 H 0.97006 * 119.99674 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.46658 * 204.15360 * 22 13 12 37 37 H 1.09006 * 109.46661 * 324.15526 * 22 13 12 38 38 H 1.09002 * 109.46872 * 63.39757 * 23 22 13 39 39 H 1.09000 * 109.46746 * 183.39419 * 23 22 13 40 40 H 1.08994 * 109.47359 * 303.40051 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.1960 2.1899 -1.0840 5 6 2.6617 3.3995 -0.7087 6 6 2.9679 4.5191 -1.6020 7 8 3.3839 5.5662 -1.1440 8 8 2.7886 4.3889 -2.9326 9 6 3.1120 5.5395 -3.7571 10 6 2.7974 3.3966 0.6510 11 6 2.3920 2.1285 1.0940 12 6 2.3635 1.6458 2.5213 13 7 3.5838 0.8861 2.8043 14 6 3.5735 -0.4808 2.7233 15 1 2.6987 -0.9931 2.3509 16 6 4.6874 -1.2079 3.1197 17 7 5.4788 -0.7387 4.0610 18 14 5.0634 -2.8525 2.3175 19 1 6.0290 -2.6524 1.2072 20 1 5.6508 -3.7719 3.3248 21 1 3.8091 -3.4405 1.7827 22 6 4.8150 1.5888 3.1740 23 6 4.8033 1.8828 4.6754 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.4926 6.3855 -3.4594 30 1 4.1635 5.7956 -3.6269 31 1 2.9234 5.3010 -4.8038 32 1 3.1442 4.2138 1.2660 33 1 2.3046 2.5021 3.1933 34 1 1.4940 1.0058 2.6712 35 1 6.2575 -1.2467 4.3377 36 1 5.6756 0.9651 2.9325 37 1 4.8786 2.5259 2.6207 38 1 4.8005 0.9441 5.2294 39 1 5.6905 2.4581 4.9398 40 1 3.9106 2.4555 4.9265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267379932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = -46.525374 kcal Electronic energy + Delta-G solvation = -22678.388593 eV Core-core repulsion = 19268.296708 eV Total energy + Delta-G solvation = -3410.091885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39856 -40.10923 -36.51107 -36.33563 -33.91708 -32.94517 -31.08765 -29.79937 -29.02651 -27.53124 -25.86201 -24.24577 -23.26714 -21.85576 -20.93791 -20.62018 -19.32717 -17.54994 -17.00697 -16.69530 -16.58670 -15.74196 -15.32572 -14.98330 -14.14444 -13.92233 -13.70163 -13.59260 -13.29487 -12.90110 -12.82190 -12.66771 -12.29548 -12.10926 -11.93526 -11.61139 -11.51028 -11.12961 -10.91243 -10.85631 -10.81878 -10.80875 -10.63004 -10.40541 -10.02382 -9.82818 -9.33782 -9.30900 -8.36207 -8.08208 -6.96468 -5.83736 -3.08106 1.08111 2.43535 2.61524 3.13439 3.22988 3.37795 3.45392 3.47981 4.50183 4.78497 4.96503 5.04659 5.12337 5.17970 5.30644 5.33733 5.42010 5.46846 5.58660 5.69266 5.79540 6.00569 6.10208 6.16462 6.18827 6.26927 6.43416 6.52028 6.56780 6.60536 6.82676 6.88495 7.05164 7.14495 7.29016 7.63595 7.73300 7.75512 8.08222 8.30351 9.19016 9.83600 10.29983 11.21469 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.005221 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.915956 B = 5361.484680 C = 5931.320463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C 0.054 3.946 4 O -0.158 6.158 5 C -0.099 4.099 6 C 0.558 3.442 7 O -0.497 6.497 8 O -0.352 6.352 9 C 0.037 3.963 10 C -0.081 4.081 11 C -0.189 4.189 12 C 0.212 3.788 13 N -0.589 5.589 14 C -0.257 4.257 15 H 0.078 0.922 16 C 0.005 3.995 17 N -0.885 5.885 18 Si 0.882 3.118 19 H -0.290 1.290 20 H -0.294 1.294 21 H -0.279 1.279 22 C 0.166 3.834 23 C -0.152 4.152 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.156 0.844 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.004 0.996 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 6.915 -10.230 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C 0.000 4.000 4 O -0.055 6.055 5 C -0.149 4.149 6 C 0.404 3.596 7 O -0.387 6.387 8 O -0.268 6.268 9 C -0.057 4.057 10 C -0.101 4.101 11 C -0.193 4.193 12 C 0.084 3.916 13 N -0.310 5.310 14 C -0.385 4.385 15 H 0.096 0.904 16 C -0.193 4.193 17 N -0.530 5.530 18 Si 0.712 3.288 19 H -0.217 1.217 20 H -0.221 1.221 21 H -0.204 1.204 22 C 0.041 3.959 23 C -0.211 4.211 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.140 0.860 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.022 0.978 38 H 0.110 0.890 39 H 0.038 0.962 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.237 7.082 -10.331 14.466 hybrid contribution 0.583 -0.505 -0.472 0.904 sum -6.653 6.577 -10.803 14.291 Atomic orbital electron populations 1.21758 0.94240 1.02207 1.02174 1.20512 0.95893 0.87089 1.06109 1.22795 0.99842 0.93962 0.83368 1.84008 1.65048 1.21033 1.35362 1.20319 1.16007 0.85971 0.92576 1.19249 0.74402 0.85170 0.80791 1.90916 1.43346 1.27521 1.76955 1.86676 1.79182 1.42446 1.18525 1.23292 1.01594 0.86968 0.93837 1.21899 0.97792 0.98575 0.91830 1.21640 1.04560 0.92883 1.00209 1.19120 0.90703 0.95116 0.86665 1.44149 1.05478 1.02574 1.78805 1.19224 1.00458 0.81630 1.37180 0.90442 1.24644 0.99170 0.97667 0.97843 1.70194 1.17473 1.39137 1.26160 0.86567 0.78469 0.84084 0.79684 1.21685 1.22056 1.20442 1.20729 0.90139 0.92768 0.92235 1.22296 0.96210 1.01841 1.00737 0.91656 0.92074 0.92825 0.90287 0.85968 0.91764 0.91713 0.87985 0.82615 0.93477 0.91938 0.93729 0.89879 0.97792 0.89022 0.96190 0.96783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.06 -0.91 6.25 -27.88 -0.17 -1.08 16 3 C 0.05 0.94 6.57 -35.40 -0.23 0.71 16 4 O -0.16 -2.83 10.67 4.75 0.05 -2.78 16 5 C -0.10 -1.76 7.18 -36.84 -0.26 -2.02 16 6 C 0.56 9.22 7.93 34.04 0.27 9.49 16 7 O -0.50 -8.80 16.66 -19.36 -0.32 -9.12 16 8 O -0.35 -5.06 10.58 -42.48 -0.45 -5.51 16 9 C 0.04 0.36 10.57 101.05 1.07 1.43 16 10 C -0.08 -1.44 10.57 -39.38 -0.42 -1.85 16 11 C -0.19 -3.48 5.70 -104.94 -0.60 -4.08 16 12 C 0.21 4.14 5.65 -5.19 -0.03 4.11 16 13 N -0.59 -13.77 2.52 -174.61 -0.44 -14.21 16 14 C -0.26 -6.42 9.05 -15.06 -0.14 -6.56 16 15 H 0.08 1.84 5.87 -52.49 -0.31 1.53 16 16 C 0.00 0.13 4.80 -17.43 -0.08 0.04 16 17 N -0.89 -24.00 8.81 55.49 0.49 -23.51 16 18 Si 0.88 20.63 29.64 -169.99 -5.04 15.59 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.17 3.96 5.62 -4.04 -0.02 3.93 16 23 C -0.15 -3.44 9.83 37.16 0.37 -3.07 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.12 2.11 4.78 -51.93 -0.25 1.86 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.05 0.88 7.98 -51.93 -0.41 0.47 16 34 H 0.06 1.16 7.83 -51.93 -0.41 0.75 16 35 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.08 2.21 5.88 -51.93 -0.31 1.91 16 37 H 0.00 0.09 8.12 -51.93 -0.42 -0.33 16 38 H 0.09 2.34 6.26 -51.93 -0.32 2.02 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.28 8.00 -51.93 -0.42 -0.13 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -28.90 336.02 -6.32 -35.22 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.78 Total: -0.37 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.11 Total: -0.38 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.05 Total: -37.72 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.72 Total: -17.41 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.04 Total: 15.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.90 -6.32 -35.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267379932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.305 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds