Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33321 * 125.94899 * 2 1 4 4 N 1.32123 * 114.57608 * 180.02562 * 3 2 1 5 5 C 1.29680 * 116.86918 * 0.02562 * 4 3 2 6 6 N 1.38617 * 124.95309 * 179.97438 * 5 4 3 7 7 C 1.46956 * 110.99633 * 0.02688 * 6 5 4 8 8 C 1.53049 * 109.37889 * 176.82330 * 7 6 5 9 9 N 1.46955 * 109.36962 * 58.38792 * 8 7 6 10 10 C 1.46896 * 111.00233 * 176.80960 * 9 8 7 11 11 C 1.53002 * 109.46988 * 169.99802 * 10 9 8 12 12 C 1.50703 * 109.46948 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00080 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99969 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99839 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99969 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47604 * 59.99537 * 16 14 12 18 18 H 1.48503 * 109.47098 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47186 * 299.99549 * 16 14 12 20 20 C 1.46955 * 110.87760 * 300.68251 * 9 8 7 21 21 C 1.46957 * 111.01919 * 236.21410 * 6 5 4 22 22 S 1.70971 * 110.10244 * 0.24360 * 5 4 3 23 23 H 1.08998 * 109.47250 * 89.97482 * 1 2 3 24 24 H 1.09002 * 109.46839 * 209.97374 * 1 2 3 25 25 H 1.09000 * 109.47348 * 329.97044 * 1 2 3 26 26 H 1.07996 * 122.71621 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.49189 * 56.84173 * 7 6 5 28 28 H 1.09002 * 109.48707 * 296.79931 * 7 6 5 29 29 H 1.09005 * 109.48797 * 178.36083 * 8 7 6 30 30 H 1.09006 * 109.49101 * 298.41852 * 8 7 6 31 31 H 1.08998 * 109.47329 * 290.00556 * 10 9 8 32 32 H 1.09008 * 109.46900 * 50.00209 * 10 9 8 33 33 H 1.08988 * 109.47264 * 300.00152 * 11 10 9 34 34 H 1.08995 * 109.46766 * 60.00317 * 11 10 9 35 35 H 0.97008 * 119.99913 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.48806 * 179.28632 * 20 9 8 37 37 H 1.09003 * 109.48675 * 299.34665 * 20 9 8 38 38 H 1.08997 * 109.47347 * 63.19559 * 21 6 5 39 39 H 1.09002 * 109.50396 * 303.15691 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 7 3.5850 0.8188 -0.0005 5 6 3.9315 -0.4309 -0.0015 6 7 5.2385 -0.8926 -0.0027 7 6 6.1920 0.2256 -0.0021 8 6 7.6185 -0.3234 0.0766 9 7 7.8603 -1.2173 -1.0645 10 6 9.2455 -1.7061 -1.0660 11 6 9.3934 -2.8164 -2.1082 12 6 10.8144 -3.3183 -2.1094 13 1 11.5396 -2.8881 -1.4345 14 6 11.1889 -4.3260 -2.9726 15 7 10.3059 -4.8495 -3.7947 16 14 12.9500 -4.9486 -2.9735 17 1 13.2867 -5.4838 -1.6299 18 1 13.0939 -6.0254 -3.9861 19 1 13.8700 -3.8312 -3.3059 20 6 6.9071 -2.3357 -1.0648 21 6 5.4806 -1.7868 -1.1435 22 16 2.5413 -1.4261 -0.0087 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8897 0.5143 26 1 1.8968 2.0852 -0.0004 27 1 6.0008 0.8661 0.8589 28 1 6.0749 0.8038 -0.9186 29 1 8.3284 0.5033 0.0478 30 1 7.7438 -0.8784 1.0063 31 1 9.9201 -0.8857 -1.3108 32 1 9.4935 -2.0983 -0.0796 33 1 8.7189 -3.6368 -1.8634 34 1 9.1454 -2.4242 -3.0945 35 1 10.5693 -5.5588 -4.4019 36 1 7.0983 -2.9763 -1.9257 37 1 7.0243 -2.9137 -0.1480 38 1 5.3553 -1.2318 -2.0732 39 1 4.7707 -2.6135 -1.1150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267454464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = 56.070345 kcal Electronic energy + Delta-G solvation = -19512.492235 eV Core-core repulsion = 16581.894857 eV Total energy + Delta-G solvation = -2930.597378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31523 -38.72080 -35.81155 -33.11552 -32.24486 -31.01644 -29.88505 -27.37729 -25.80130 -24.29124 -23.53516 -23.22935 -20.84422 -19.77027 -19.15382 -18.19947 -16.73171 -16.22496 -15.39707 -14.90020 -14.73475 -14.64039 -14.60760 -14.24853 -14.03963 -13.92252 -13.18101 -12.99726 -12.88139 -12.48048 -12.27498 -11.86805 -11.42295 -11.29668 -11.15110 -10.97909 -10.94230 -10.67352 -10.54030 -10.03199 -9.87067 -9.67953 -9.35903 -9.28824 -9.14641 -8.37230 -8.10969 -7.79633 -6.03112 -4.05462 0.66142 1.06131 1.64462 2.70127 3.32159 3.36605 3.38999 3.55373 4.31852 4.45115 4.49642 4.77945 4.94417 4.96531 5.16793 5.23734 5.27827 5.33500 5.45121 5.50443 5.52566 5.61712 5.62514 5.85233 5.97905 6.04636 6.14165 6.23881 6.34794 6.39793 6.59564 6.79653 6.87806 7.41420 7.51220 7.69194 7.70705 7.80924 8.00163 8.39145 9.00627 9.58492 11.08248 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.043714 B = 0.003123 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.375455 B = 8964.858786 C = 9429.839995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.257 4.257 3 C 0.059 3.941 4 N -0.520 5.520 5 C 0.233 3.767 6 N -0.451 5.451 7 C 0.075 3.925 8 C 0.052 3.948 9 N -0.542 5.542 10 C 0.063 3.937 11 C 0.021 3.979 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.055 3.945 21 C 0.059 3.941 22 S 0.132 5.868 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.172 0.828 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.020 0.980 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.107 0.893 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.589 8.931 7.897 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.379 4.379 3 C -0.093 4.093 4 N -0.241 5.241 5 C -0.136 4.136 6 N -0.172 5.172 7 C -0.054 4.054 8 C -0.077 4.077 9 N -0.267 5.267 10 C -0.064 4.064 11 C -0.016 4.016 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.074 4.074 21 C -0.067 4.067 22 S 0.385 5.615 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.189 0.811 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.269 8.081 7.739 21.423 hybrid contribution 0.760 0.449 0.213 0.908 sum -17.509 8.530 7.952 21.037 Atomic orbital electron populations 1.20131 0.86979 1.03017 1.02614 1.25659 1.01342 0.94822 1.16062 1.21419 0.86693 0.99802 1.01339 1.66848 1.18101 1.17431 1.21701 1.25109 0.96480 0.91146 1.00865 1.59289 0.97779 1.19087 1.41075 1.22162 0.89816 0.90544 1.02865 1.22222 0.94940 0.97523 0.92971 1.62316 1.05402 1.18062 1.40927 1.22335 0.85536 0.99067 0.99426 1.19235 0.96844 0.91771 0.93768 1.21133 0.95542 1.19057 1.20417 0.92762 1.24984 0.97380 0.96511 0.95386 1.69948 1.33969 1.26640 1.22745 0.86641 0.85050 0.78487 0.77720 1.20274 1.21269 1.20207 1.22270 0.88754 0.93419 1.02938 1.22595 0.99098 0.95151 0.89901 1.83903 0.96707 1.09954 1.70963 0.90929 0.91394 0.90547 0.81146 0.89602 0.92063 0.89876 0.94312 0.91692 0.95916 0.96175 0.95676 0.92893 0.87510 0.94010 0.92116 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.41 36.01 0.37 -0.07 16 2 C -0.26 -2.59 6.58 -36.02 -0.24 -2.83 16 3 C 0.06 0.66 11.24 -19.14 -0.22 0.45 16 4 N -0.52 -7.28 9.51 -15.21 -0.14 -7.43 16 5 C 0.23 3.23 6.74 -87.68 -0.59 2.64 16 6 N -0.45 -6.57 4.78 -175.22 -0.84 -7.40 16 7 C 0.07 1.08 4.93 -3.77 -0.02 1.06 16 8 C 0.05 0.80 5.58 -3.77 -0.02 0.78 16 9 N -0.54 -9.78 4.86 -234.46 -1.14 -10.92 16 10 C 0.06 1.31 5.22 -3.83 -0.02 1.29 16 11 C 0.02 0.53 4.24 -27.88 -0.12 0.41 16 12 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C 0.05 0.93 4.93 -3.77 -0.02 0.91 16 21 C 0.06 0.86 5.45 -3.77 -0.02 0.84 16 22 S 0.13 1.50 22.32 -107.50 -2.40 -0.90 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.09 1.18 7.98 -51.93 -0.41 0.77 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.47 8.08 -51.92 -0.42 0.05 16 33 H 0.02 0.53 6.26 -51.94 -0.33 0.20 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.11 2.01 5.99 -51.93 -0.31 1.70 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.07 7.44 -51.93 -0.39 0.69 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -30.46 326.76 -11.22 -41.68 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.05 Total: -2.86 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.30 Total: -7.86 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -1.38 Total: -51.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.40 Total: -0.90 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.46 -11.22 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267454464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.749 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds