Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34923 * 117.00263 * 2 1 4 4 O 1.21670 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.41560 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.33872 * 125.97510 * 179.97438 * 5 3 2 7 7 C 1.50696 * 122.92637 * 0.02562 * 6 5 3 8 8 O 1.33754 * 114.13891 * 180.02562 * 6 5 3 9 9 C 1.45608 * 110.38068 * 359.97438 * 8 6 5 10 10 H 1.09005 * 110.49063 * 241.19884 * 9 8 6 11 11 C 1.52999 * 110.49197 * 118.67123 * 9 8 6 12 12 N 1.46497 * 109.47414 * 66.45332 * 11 9 8 13 13 C 1.36941 * 119.99930 * 89.99649 * 12 11 9 14 14 H 1.07997 * 120.00122 * 214.59468 * 13 12 11 15 15 C 1.38816 * 119.99679 * 34.59850 * 13 12 11 16 16 N 1.31620 * 119.99932 * 27.61831 * 15 13 12 17 17 Si 1.86800 * 119.99618 * 207.61904 * 15 13 12 18 18 H 1.48494 * 109.47078 * 270.00083 * 17 15 13 19 19 H 1.48502 * 109.46988 * 30.00197 * 17 15 13 20 20 H 1.48507 * 109.46863 * 149.99856 * 17 15 13 21 21 C 1.46498 * 120.00008 * 270.00203 * 12 11 9 22 22 C 1.53004 * 117.49664 * 188.48218 * 21 12 11 23 23 C 1.53002 * 117.49908 * 119.86045 * 21 12 11 24 24 C 1.51454 * 125.97353 * 0.02562 * 5 3 2 25 25 H 1.08998 * 109.47080 * 59.99635 * 1 2 3 26 26 H 1.08994 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46841 * 299.99777 * 1 2 3 28 28 H 1.09007 * 109.47015 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47229 * 299.99592 * 7 6 5 30 30 H 1.09000 * 109.47548 * 60.00277 * 7 6 5 31 31 H 1.09000 * 109.47266 * 306.45380 * 11 9 8 32 32 H 1.08999 * 109.46559 * 186.45701 * 11 9 8 33 33 H 0.97000 * 120.00393 * 5.48330 * 16 15 13 34 34 H 1.09002 * 115.55098 * 334.18460 * 21 12 11 35 35 H 1.09001 * 117.50016 * 359.97438 * 22 21 12 36 36 H 1.09003 * 117.49617 * 145.01923 * 22 21 12 37 37 H 1.09001 * 117.49359 * 214.97548 * 23 21 12 38 38 H 1.08998 * 117.50135 * 359.97343 * 23 21 12 39 39 H 1.09001 * 110.66120 * 61.52836 * 24 5 3 40 40 H 1.09003 * 110.65636 * 298.42340 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2021 0.0000 4 8 1.3790 2.2226 0.0005 5 6 3.4552 1.2762 -0.0005 6 6 4.1839 2.3993 -0.0011 7 6 3.5686 3.7749 -0.0006 8 8 5.5056 2.1938 -0.0021 9 6 5.7969 0.7672 -0.0017 10 1 6.3560 0.4921 0.8927 11 6 6.5768 0.3794 -1.2596 12 7 7.9019 1.0031 -1.2244 13 6 8.9538 0.3437 -0.6465 14 1 9.7141 0.8989 -0.1172 15 6 9.0430 -1.0384 -0.7412 16 7 8.5032 -1.6640 -1.7657 17 14 9.9290 -2.0101 0.5855 18 1 11.3642 -2.1416 0.2277 19 1 9.8056 -1.3008 1.8844 20 1 9.3214 -3.3604 0.6992 21 6 8.1016 2.3322 -1.8072 22 6 9.5385 2.8459 -1.9189 23 6 8.5907 3.4449 -0.8778 24 6 4.4078 0.0987 -0.0017 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.3584 4.5262 -0.0008 29 1 2.9506 3.8968 -0.8902 30 1 2.9519 3.8969 0.8898 31 1 6.0370 0.7229 -2.1421 32 1 6.6862 -0.7043 -1.2995 33 1 8.1131 -1.1555 -2.4938 34 1 7.4053 2.6077 -2.5993 35 1 10.3352 2.1952 -1.5583 36 1 9.7878 3.4595 -2.7847 37 1 8.2163 4.4525 -1.0588 38 1 8.7634 3.1882 0.1673 39 1 4.2713 -0.5055 -0.8986 40 1 4.2726 -0.5061 0.8949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272325039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = -58.749359 kcal Electronic energy + Delta-G solvation = -22862.656250 eV Core-core repulsion = 19452.034293 eV Total energy + Delta-G solvation = -3410.621957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03534 -39.78659 -37.16704 -36.37435 -34.06805 -32.79028 -32.05444 -30.18463 -28.29601 -27.10343 -24.96905 -23.41313 -22.64849 -21.42080 -21.33062 -19.99661 -19.36508 -17.43892 -16.98430 -16.72870 -16.35405 -15.90277 -15.11265 -14.96512 -14.39347 -14.00749 -13.65816 -13.41368 -13.29433 -13.08417 -12.79613 -12.72006 -12.32190 -12.13663 -12.03819 -11.75996 -11.48185 -10.98855 -10.93178 -10.81552 -10.64001 -10.61939 -10.58949 -10.24578 -10.13263 -9.86104 -9.54401 -9.33847 -8.39339 -8.13775 -6.86276 -6.16240 -3.47936 1.33151 3.05653 3.20675 3.42536 3.45983 3.47294 3.61868 4.43637 4.70850 4.86721 4.94659 5.12377 5.13220 5.18490 5.21849 5.29766 5.41091 5.48224 5.50151 5.59997 5.68055 5.82602 5.89608 5.95993 6.02857 6.13482 6.21685 6.30679 6.35977 6.43605 6.51191 6.59160 6.63369 6.87142 6.93281 7.09368 7.34655 7.99091 8.04079 8.43547 8.97855 9.67798 10.11567 11.01187 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.005432 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.489350 B = 5153.812431 C = 6250.919417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.542 3.458 4 O -0.536 6.536 5 C -0.357 4.357 6 C 0.213 3.787 7 C -0.102 4.102 8 O -0.269 6.269 9 C 0.059 3.941 10 H 0.106 0.894 11 C 0.136 3.864 12 N -0.556 5.556 13 C -0.352 4.352 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.901 5.901 17 Si 1.060 2.940 18 H -0.292 1.292 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.129 3.871 22 C -0.196 4.196 23 C -0.213 4.213 24 C -0.086 4.086 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.270 0.730 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 5.495 2.854 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.394 3.606 4 O -0.431 6.431 5 C -0.360 4.360 6 C 0.160 3.840 7 C -0.158 4.158 8 O -0.177 6.177 9 C 0.003 3.997 10 H 0.124 0.876 11 C 0.009 3.991 12 N -0.273 5.273 13 C -0.480 4.480 14 H 0.074 0.926 15 C -0.221 4.221 16 N -0.539 5.539 17 Si 0.889 3.111 18 H -0.219 1.219 19 H -0.217 1.217 20 H -0.210 1.210 21 C 0.020 3.980 22 C -0.234 4.234 23 C -0.254 4.254 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.631 4.314 3.349 11.952 hybrid contribution -0.535 1.443 -0.441 1.601 sum -11.166 5.757 2.908 12.895 Atomic orbital electron populations 1.22782 0.77770 1.03133 1.01962 1.86226 1.22484 1.33319 1.84970 1.18574 0.87981 0.81089 0.72949 1.90820 1.67227 1.35553 1.49475 1.19471 0.91540 0.96087 1.28910 1.22150 0.84201 0.95875 0.81811 1.20844 1.00360 0.89654 1.04958 1.86875 1.18494 1.30251 1.82124 1.24880 0.95524 0.74781 1.04558 0.87585 1.21392 0.84692 1.01146 0.91892 1.43414 1.04384 1.14540 1.64978 1.19812 1.05104 0.91892 1.31237 0.92561 1.25917 1.00548 0.95170 1.00438 1.70782 1.37893 1.39171 1.06079 0.83613 0.75989 0.76041 0.75422 1.21936 1.21699 1.20983 1.21032 0.94625 0.86497 0.95843 1.23089 0.95949 1.03962 1.00402 1.23245 1.06935 0.98099 0.97124 1.21500 0.90943 0.96357 1.03609 0.92534 0.88522 0.92570 0.90423 0.88554 0.88594 0.94117 0.87794 0.91882 0.90003 0.88299 0.90800 0.90997 0.89742 0.89759 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.45 101.05 1.06 1.46 16 2 O -0.35 -5.19 10.26 -41.10 -0.42 -5.61 16 3 C 0.54 8.73 7.71 32.00 0.25 8.98 16 4 O -0.54 -9.00 14.35 -19.40 -0.28 -9.28 16 5 C -0.36 -5.84 6.06 -104.52 -0.63 -6.48 16 6 C 0.21 3.41 7.05 -35.84 -0.25 3.16 16 7 C -0.10 -1.30 8.78 36.00 0.32 -0.99 16 8 O -0.27 -4.90 10.45 -13.31 -0.14 -5.04 16 9 C 0.06 1.12 4.11 -26.13 -0.11 1.01 16 10 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 11 C 0.14 2.92 4.44 -4.04 -0.02 2.90 16 12 N -0.56 -13.06 2.58 -165.66 -0.43 -13.48 16 13 C -0.35 -9.11 8.23 -15.06 -0.12 -9.24 16 14 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 15 C -0.02 -0.46 4.81 -17.43 -0.08 -0.54 16 16 N -0.90 -25.07 12.19 55.49 0.68 -24.39 16 17 Si 1.06 23.89 30.00 -169.99 -5.10 18.79 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.13 2.72 6.33 -67.93 -0.43 2.29 16 22 C -0.20 -3.89 9.77 -26.73 -0.26 -4.16 16 23 C -0.21 -4.11 10.26 -26.73 -0.27 -4.39 16 24 C -0.09 -1.43 6.44 -26.91 -0.17 -1.60 16 25 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.10 1.20 7.75 -51.93 -0.40 0.80 16 30 H 0.10 1.17 7.75 -51.93 -0.40 0.77 16 31 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.10 2.47 5.36 -51.93 -0.28 2.19 16 33 H 0.27 7.61 7.22 -40.82 -0.29 7.31 16 34 H 0.08 1.64 8.12 -51.93 -0.42 1.22 16 35 H 0.10 2.18 6.67 -51.93 -0.35 1.83 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -28.98 334.58 -7.32 -36.30 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.94 Total: 5.26 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.74 Total: -7.59 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.25 Total: -37.88 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.84 Total: -19.93 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.10 Total: 18.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.98 -7.32 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272325039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.448 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds