Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.46877 * 119.99611 * 2 1 3 5 5 H 1.08995 * 109.47189 * 182.66731 * 4 2 1 6 6 O 1.42901 * 109.47064 * 302.67037 * 4 2 1 7 7 C 1.50696 * 109.46714 * 62.66947 * 4 2 1 8 8 O 1.21282 * 120.00100 * 259.27860 * 7 4 2 9 9 N 1.34780 * 120.00136 * 79.56100 * 7 4 2 10 10 C 1.46496 * 120.00071 * 354.86660 * 9 7 4 11 11 C 1.50700 * 109.47097 * 85.73741 * 10 9 7 12 12 H 1.08003 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00233 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99668 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00207 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47008 * 90.00024 * 15 13 11 17 17 H 1.48499 * 109.47168 * 209.99806 * 15 13 11 18 18 H 1.48500 * 109.47085 * 330.00295 * 15 13 11 19 19 C 1.46501 * 119.99931 * 174.86946 * 9 7 4 20 20 C 1.50696 * 109.47239 * 94.81623 * 19 9 7 21 21 C 1.34515 * 125.79337 * 89.71358 * 20 19 9 22 22 C 1.41373 * 106.84097 * 179.89005 * 21 20 19 23 23 C 1.34507 * 106.84657 * 0.37438 * 22 21 20 24 24 O 1.34300 * 125.78700 * 270.02286 * 20 19 9 25 25 H 1.09005 * 109.46958 * 300.00309 * 1 2 3 26 26 H 1.08998 * 109.46760 * 59.99986 * 1 2 3 27 27 H 1.08992 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47265 * 239.99349 * 2 1 3 29 29 H 1.09003 * 109.47371 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47241 * 299.99719 * 3 2 1 31 31 H 1.09005 * 109.47383 * 59.99951 * 3 2 1 32 32 H 0.96696 * 114.00177 * 60.00027 * 6 4 2 33 33 H 1.08992 * 109.47534 * 205.74434 * 10 9 7 34 34 H 1.09000 * 109.46862 * 325.74630 * 10 9 7 35 35 H 0.97001 * 119.99572 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.46842 * 214.81308 * 19 9 7 37 37 H 1.09003 * 109.47111 * 334.81102 * 19 9 7 38 38 H 1.08006 * 126.57275 * 0.02562 * 21 20 19 39 39 H 1.08006 * 126.57803 * 180.16219 * 22 21 20 40 40 H 1.07998 * 125.79653 * 179.75783 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 3.1289 -0.6800 1.2736 6 8 1.5130 -0.0847 2.4152 7 6 1.5923 -2.1598 1.2167 8 8 0.6374 -2.5128 1.8758 9 7 2.2566 -3.0553 0.4595 10 6 3.3423 -2.6105 -0.4179 11 6 4.6296 -2.5567 0.3637 12 1 4.6384 -2.8272 1.4092 13 6 5.7964 -2.1622 -0.2560 14 7 5.7857 -1.8324 -1.5291 15 14 7.3923 -2.0962 0.7125 16 1 8.0807 -3.4090 0.6222 17 1 8.2691 -1.0378 0.1503 18 1 7.0957 -1.7896 2.1349 19 6 1.8930 -4.4734 0.5138 20 6 0.9240 -4.7864 -0.5971 21 6 1.2530 -5.1839 -1.8393 22 6 0.0418 -5.3656 -2.5455 23 6 -0.9547 -5.0602 -1.6953 24 8 -0.4144 -4.7101 -0.5165 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.5471 -0.0841 2.4604 33 1 3.4493 -3.3101 -1.2468 34 1 3.1118 -1.6187 -0.8069 35 1 6.6065 -1.5544 -1.9650 36 1 2.7890 -5.0829 0.3968 37 1 1.4273 -4.6926 1.4747 38 1 2.2510 -5.3372 -2.2228 39 1 -0.0631 -5.6847 -3.5720 40 1 -2.0102 -5.0911 -1.9220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285916972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -81.213106 kcal Electronic energy + Delta-G solvation = -23392.033559 eV Core-core repulsion = 19980.437502 eV Total energy + Delta-G solvation = -3411.596058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20909 -39.75328 -36.79331 -35.29700 -33.39530 -32.86447 -32.53689 -30.52707 -27.44782 -27.16350 -26.89457 -24.81286 -23.07055 -21.37598 -20.50917 -20.07074 -18.91968 -17.17039 -17.00956 -16.42186 -16.19427 -15.68951 -15.52555 -14.71664 -14.50299 -14.34951 -13.88220 -13.40084 -12.97663 -12.63617 -12.50643 -12.45466 -12.32114 -12.28029 -11.92654 -11.80264 -11.61707 -11.35154 -11.17217 -10.98574 -10.87813 -10.80964 -10.41201 -10.21101 -9.94642 -9.80058 -9.60416 -8.89813 -8.61977 -8.19086 -7.91429 -6.25738 -4.34059 1.99807 2.88084 3.13516 3.19828 3.27810 3.31756 3.43718 3.92275 4.28505 4.82830 5.02789 5.08010 5.11064 5.18545 5.28612 5.32380 5.35757 5.53792 5.74402 5.89331 5.95661 6.00940 6.08892 6.10815 6.14314 6.25273 6.29484 6.35815 6.39471 6.57988 6.61567 6.64638 6.80905 7.13889 7.36822 7.49481 7.68757 7.93891 7.96421 8.17891 8.69486 8.86308 9.34585 10.80624 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.007609 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.023624 B = 3678.945337 C = 4970.499228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.138 4.138 4 C 0.097 3.903 5 H 0.143 0.857 6 O -0.543 6.543 7 C 0.496 3.504 8 O -0.564 6.564 9 N -0.589 5.589 10 C 0.230 3.770 11 C -0.546 4.546 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.887 5.887 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.193 3.807 20 C -0.014 4.014 21 C -0.202 4.202 22 C -0.215 4.215 23 C -0.053 4.053 24 O -0.168 6.168 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.371 0.629 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.266 0.734 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 -0.920 -1.524 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.195 4.195 4 C 0.035 3.965 5 H 0.160 0.840 6 O -0.348 6.348 7 C 0.284 3.716 8 O -0.444 6.444 9 N -0.321 5.321 10 C 0.110 3.890 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.069 3.931 20 C -0.066 4.066 21 C -0.222 4.222 22 C -0.235 4.235 23 C -0.122 4.122 24 O -0.063 6.063 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.855 -0.836 -0.938 8.943 hybrid contribution 0.499 -0.252 -0.275 0.623 sum -8.356 -1.088 -1.213 8.513 Atomic orbital electron populations 1.21864 0.95355 1.02122 1.01551 1.21770 0.95932 0.97770 0.98780 1.21708 1.01774 0.94766 1.01243 1.22067 1.01549 0.87299 0.85590 0.83952 1.86572 1.26246 1.78911 1.43096 1.21480 0.82198 0.89225 0.78655 1.90604 1.28227 1.80814 1.44744 1.48324 1.35252 1.05423 1.43053 1.19666 0.83207 0.96791 0.89299 1.21498 0.92607 1.46963 0.97326 0.91830 1.24929 0.99119 0.94585 0.94892 1.69921 1.28486 1.44117 1.09914 0.86522 0.82874 0.77944 0.80384 1.20476 1.20988 1.19578 1.19733 0.94364 0.84288 0.94722 1.23210 0.81172 1.03696 0.98528 1.21680 0.99764 1.07183 0.93580 1.21785 0.92506 1.08069 1.01091 1.23951 0.99196 1.05047 0.83980 1.84099 1.20522 1.67190 1.34517 0.92662 0.92462 0.92445 0.88969 0.91924 0.92994 0.92396 0.78005 0.94186 0.93648 0.92399 0.87144 0.89126 0.83322 0.83873 0.78736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.62 37.16 0.32 -1.96 16 2 C -0.12 -2.08 2.51 -90.62 -0.23 -2.31 16 3 C -0.14 -2.07 9.07 37.16 0.34 -1.74 16 4 C 0.10 1.86 2.36 -27.88 -0.07 1.79 16 5 H 0.14 3.04 6.58 -51.93 -0.34 2.69 16 6 O -0.54 -9.96 12.48 -54.36 -0.68 -10.64 16 7 C 0.50 10.35 5.86 -10.99 -0.06 10.28 16 8 O -0.56 -12.61 15.63 -13.57 -0.21 -12.82 16 9 N -0.59 -12.14 2.45 -176.44 -0.43 -12.57 16 10 C 0.23 5.19 4.84 -5.20 -0.03 5.16 16 11 C -0.55 -13.49 8.26 -34.44 -0.28 -13.78 16 12 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -23.35 13.29 55.43 0.74 -22.61 16 15 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.19 3.57 5.94 -5.20 -0.03 3.54 16 20 C -0.01 -0.26 6.90 -35.63 -0.25 -0.50 16 21 C -0.20 -3.35 10.81 -39.71 -0.43 -3.78 16 22 C -0.22 -3.10 10.91 -39.71 -0.43 -3.53 16 23 C -0.05 -0.76 12.09 29.41 0.36 -0.40 16 24 O -0.17 -2.99 10.65 5.69 0.06 -2.93 16 25 H 0.05 0.75 6.74 -51.93 -0.35 0.40 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.98 7.11 -51.93 -0.37 0.61 16 28 H 0.09 1.70 5.83 -51.93 -0.30 1.40 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.82 7.76 -51.93 -0.40 0.42 16 32 H 0.37 5.94 6.86 45.56 0.31 6.26 16 33 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.05 1.06 4.74 -51.93 -0.25 0.81 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.11 1.89 8.11 -51.93 -0.42 1.47 16 37 H 0.09 1.68 7.35 -51.93 -0.38 1.30 16 38 H 0.15 2.38 8.06 -52.48 -0.42 1.95 16 39 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -28.81 332.81 -6.42 -35.23 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.00 Total: 11.98 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.89 Total: -5.58 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.30 Total: -35.18 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.83 Total: -26.39 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.81 -6.42 -35.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285916972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.983 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds