Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47139 * 2 1 4 4 H 1.09002 * 109.47117 * 304.24803 * 3 2 1 5 5 C 1.50701 * 109.47400 * 184.24866 * 3 2 1 6 6 H 1.08002 * 119.99921 * 240.00381 * 5 3 2 7 7 C 1.37878 * 120.00107 * 59.99667 * 5 3 2 8 8 N 1.31516 * 119.99653 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47427 * 60.00188 * 9 7 5 11 11 H 1.48501 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47229 * 299.99883 * 9 7 5 13 13 N 1.46905 * 109.47452 * 64.24668 * 3 2 1 14 14 C 1.46894 * 111.00029 * 205.87122 * 13 3 2 15 15 C 1.50700 * 109.46876 * 174.81759 * 14 13 3 16 16 C 1.32581 * 119.99940 * 125.00342 * 15 14 13 17 17 C 1.47793 * 119.99959 * 180.02562 * 16 15 14 18 18 C 1.39561 * 120.10619 * 180.02562 * 17 16 15 19 19 C 1.37940 * 119.92599 * 179.97438 * 18 17 16 20 20 C 1.38522 * 120.14776 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.89487 * 179.97438 * 20 19 18 22 22 C 1.38766 * 120.21028 * 359.97438 * 20 19 18 23 23 F 1.35108 * 119.96218 * 180.02562 * 22 20 19 24 24 C 1.38137 * 120.07326 * 0.02562 * 22 20 19 25 25 H 1.08994 * 109.47215 * 54.90071 * 1 2 3 26 26 H 1.09002 * 109.46954 * 174.89965 * 1 2 3 27 27 H 1.08998 * 109.46972 * 294.89709 * 1 2 3 28 28 H 1.09000 * 109.47334 * 239.99856 * 2 1 3 29 29 H 1.09003 * 109.47193 * 119.99818 * 2 1 3 30 30 H 0.97007 * 120.00184 * 180.02562 * 8 7 5 31 31 H 1.00893 * 110.99585 * 81.91657 * 13 3 2 32 32 H 1.09002 * 109.47354 * 54.81829 * 14 13 3 33 33 H 1.08997 * 109.47331 * 294.81778 * 14 13 3 34 34 H 1.08001 * 120.00179 * 304.99593 * 15 14 13 35 35 H 1.08001 * 119.99881 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.03734 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.92516 * 179.72067 * 19 18 17 38 38 H 1.08004 * 120.07331 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1053 6 1 4.1390 1.8918 0.6764 7 6 4.1583 0.8731 -1.1994 8 7 3.4329 0.3280 -2.1513 9 14 6.0218 0.8742 -1.3295 10 1 6.5993 0.1445 -0.1722 11 1 6.4303 0.2042 -2.5902 12 1 6.5172 2.2741 -1.3292 13 7 1.6359 2.1048 1.2474 14 6 1.5392 3.5590 1.0639 15 6 1.0017 4.1895 2.3227 16 6 1.6794 5.1603 2.9195 17 6 1.1525 5.7782 4.1543 18 6 1.8637 6.8006 4.7841 19 6 1.3682 7.3751 5.9361 20 6 0.1660 6.9398 6.4691 21 9 -0.3143 7.5057 7.5980 22 6 -0.5466 5.9244 5.8472 23 9 -1.7189 5.5041 6.3711 24 6 -0.0587 5.3428 4.6931 25 1 -0.3633 0.5909 -0.8407 26 1 -0.3633 -1.0236 -0.0914 27 1 -0.3633 0.4326 0.9322 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8656 -0.0739 -2.9210 31 1 2.2686 1.8765 1.9994 32 1 0.8678 3.7767 0.2333 33 1 2.5277 3.9645 0.8480 34 1 0.0644 3.8507 2.7387 35 1 2.6168 5.4989 2.5037 36 1 2.8010 7.1417 4.3698 37 1 1.9209 8.1632 6.4259 38 1 -0.6131 4.5522 4.2093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289542850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -62.194300 kcal Electronic energy + Delta-G solvation = -20634.197111 eV Core-core repulsion = 17112.338255 eV Total energy + Delta-G solvation = -3521.858856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.61889 -48.69363 -39.25845 -36.60467 -34.53700 -32.30968 -31.22289 -30.97720 -29.25633 -26.59153 -24.59574 -23.60598 -22.67480 -21.82841 -19.77686 -19.30179 -18.19475 -17.31895 -16.90967 -16.72504 -16.45854 -15.35870 -15.11446 -14.88394 -14.63479 -14.33081 -13.99542 -13.83910 -13.59760 -12.94209 -12.80917 -12.70329 -12.45268 -12.18494 -11.90877 -11.44345 -11.31396 -11.22845 -10.95833 -10.84931 -10.70403 -10.18481 -10.07025 -9.64667 -9.55695 -9.24365 -9.13475 -8.43508 -8.16129 -7.36795 -6.05385 -4.18772 0.46801 0.78656 2.28638 3.24040 3.29934 3.31790 3.42533 3.58650 4.12572 4.31486 4.34381 4.46612 4.74356 4.86940 5.15703 5.19799 5.38176 5.55622 5.61799 5.67050 5.70447 5.76996 5.98937 6.20461 6.32494 6.37638 6.47060 6.52813 6.66802 6.72215 6.78475 7.08351 7.13217 7.37589 7.53053 7.71970 8.01658 8.06683 8.25142 8.57062 8.92932 9.49175 10.94977 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.003087 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.608170 B = 9067.056414 C = 9984.306132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.085 3.915 15 C -0.089 4.089 16 C -0.158 4.158 17 C -0.012 4.012 18 C -0.099 4.099 19 C -0.121 4.121 20 C 0.050 3.950 21 F -0.133 7.133 22 C 0.074 3.926 23 F -0.130 7.130 24 C -0.132 4.132 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.330 0.670 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 11.901 12.432 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.044 4.044 15 C -0.108 4.108 16 C -0.177 4.177 17 C -0.012 4.012 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.030 3.970 21 F -0.112 7.112 22 C 0.054 3.946 23 F -0.109 7.109 24 C -0.150 4.150 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.578 11.688 12.184 17.781 hybrid contribution 1.714 0.243 0.155 1.738 sum -3.865 11.931 12.339 17.594 Atomic orbital electron populations 1.21692 0.98958 0.98363 1.00354 1.21503 0.92112 0.99137 1.01753 1.19176 0.92782 0.91232 0.86041 0.94946 1.21819 0.92647 1.38404 1.05934 0.92880 1.24931 0.98037 0.94893 0.95607 1.69866 1.35055 1.37785 1.09522 0.86703 0.85938 0.78194 0.77428 1.20248 1.21198 1.20382 1.60890 1.55503 1.05016 1.10126 1.20932 0.99077 0.90653 0.93740 1.23798 0.98222 0.92997 0.95743 1.21570 1.01283 1.00039 0.94812 1.19029 0.92652 0.94590 0.94963 1.21223 1.00365 0.95620 0.94524 1.20995 0.94204 1.01547 0.97273 1.17736 0.95814 0.96844 0.86585 1.91511 1.87953 1.83620 1.48107 1.17577 0.84263 0.97227 0.95541 1.91533 1.44350 1.89025 1.85969 1.21305 0.97338 1.01664 0.94728 0.94438 0.95622 0.93490 0.89133 0.95038 0.92745 0.85416 0.90605 0.94455 0.86761 0.85675 0.84023 0.83765 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.73 37.16 0.36 -2.36 16 2 C -0.11 -2.47 5.45 -26.73 -0.15 -2.62 16 3 C 0.22 5.08 1.98 -68.86 -0.14 4.95 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -14.23 8.47 -34.44 -0.29 -14.53 16 6 H 0.05 1.36 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.35 11.30 55.43 0.63 -23.72 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 N -0.69 -13.41 5.72 -109.22 -0.62 -14.04 16 14 C 0.09 1.43 5.95 -4.98 -0.03 1.40 16 15 C -0.09 -1.19 9.24 -36.21 -0.33 -1.52 16 16 C -0.16 -1.86 9.52 -37.58 -0.36 -2.22 16 17 C -0.01 -0.13 5.87 -105.02 -0.62 -0.75 16 18 C -0.10 -0.90 9.78 -39.20 -0.38 -1.28 16 19 C -0.12 -1.09 10.01 -39.59 -0.40 -1.49 16 20 C 0.05 0.56 7.31 -39.28 -0.29 0.27 16 21 F -0.13 -1.59 17.17 2.25 0.04 -1.55 16 22 C 0.07 0.88 7.30 -39.42 -0.29 0.59 16 23 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 24 C -0.13 -1.47 9.37 -39.14 -0.37 -1.84 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 28 H 0.09 2.36 5.97 -51.93 -0.31 2.05 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.33 6.44 8.45 -39.30 -0.33 6.11 16 32 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 33 H 0.04 0.67 7.78 -51.93 -0.40 0.26 16 34 H 0.11 1.42 6.03 -52.49 -0.32 1.11 16 35 H 0.13 1.39 7.87 -52.49 -0.41 0.98 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.15 1.55 6.16 -52.48 -0.32 1.23 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -27.11 329.84 -8.31 -35.43 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.97 Total: 4.70 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -3.37 Total: -19.66 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.00 Total: -37.76 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.11 -8.31 -35.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289542850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.768 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds