Wall clock time and date at job start Tue Mar 31 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46634 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46755 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.47439 * 110.99806 * 69.87862 * 13 12 11 15 15 C 1.54316 * 107.23538 * 123.26061 * 14 13 12 16 16 C 1.55138 * 103.01710 * 22.27808 * 15 14 13 17 17 H 1.08995 * 110.99166 * 82.44868 * 16 15 14 18 18 N 1.46509 * 110.98685 * 206.22160 * 16 15 14 19 19 C 1.34940 * 126.03785 * 33.25964 * 18 16 15 20 20 C 1.35320 * 107.74419 * 179.83958 * 19 18 16 21 21 C 1.39869 * 107.92086 * 0.42701 * 20 19 18 22 22 N 1.30836 * 108.19972 * 359.73550 * 21 20 19 23 23 C 1.47841 * 110.99747 * 190.71989 * 13 12 11 24 24 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 26 26 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 27 27 H 1.08991 * 109.47539 * 299.99799 * 11 10 9 28 28 H 1.08995 * 109.47390 * 60.00583 * 11 10 9 29 29 H 1.09005 * 109.47067 * 300.00214 * 12 11 10 30 30 H 1.09001 * 109.47120 * 59.99947 * 12 11 10 31 31 H 1.09005 * 109.88316 * 242.66483 * 14 13 12 32 32 H 1.09002 * 109.89109 * 3.84645 * 14 13 12 33 33 H 1.08995 * 110.70702 * 140.66655 * 15 14 13 34 34 H 1.09005 * 110.70081 * 263.89875 * 15 14 13 35 35 H 1.07999 * 126.13347 * 0.02562 * 19 18 16 36 36 H 1.08003 * 126.03827 * 180.16677 * 20 19 18 37 37 H 1.07997 * 125.90266 * 179.75965 * 21 20 19 38 38 H 1.09002 * 110.37909 * 332.46352 * 23 13 12 39 39 H 1.09000 * 110.37900 * 94.80882 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9794 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6363 -7.6834 -0.0031 14 6 2.0078 -8.0111 -1.2959 15 6 2.7253 -9.2600 -1.8497 16 6 3.3359 -9.9050 -0.5776 17 1 2.5964 -10.5100 -0.0532 18 7 4.5206 -10.7005 -0.9097 19 6 5.4066 -10.4332 -1.8917 20 6 6.3525 -11.4006 -1.8683 21 6 6.0281 -12.2950 -0.8430 22 7 4.9301 -11.8763 -0.2677 23 6 3.7206 -8.6553 0.2530 24 1 -0.4849 -0.8401 0.0004 25 1 3.1246 -3.7313 -0.8905 26 1 3.1245 -3.7313 0.8895 27 1 1.3706 -5.4846 0.8885 28 1 1.3711 -5.4840 -0.8914 29 1 3.7600 -6.1471 -0.8918 30 1 3.7602 -6.1480 0.8882 31 1 0.9492 -8.2259 -1.1496 32 1 2.1270 -7.1775 -1.9880 33 1 2.0126 -9.9368 -2.3208 34 1 3.5092 -8.9747 -2.5513 35 1 5.3695 -9.5954 -2.5722 36 1 7.2048 -11.4721 -2.5278 37 1 6.5874 -13.1784 -0.5726 38 1 4.6766 -8.2550 -0.0843 39 1 3.7651 -8.9036 1.3134 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291652586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:42 Heat of formation + Delta-G solvation = 70.233260 kcal Electronic energy + Delta-G solvation = -18870.165409 eV Core-core repulsion = 15940.182181 eV Total energy + Delta-G solvation = -2929.983228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56018 -39.28658 -34.92393 -32.59680 -32.36567 -30.40619 -30.21254 -28.44627 -25.65837 -24.70410 -23.01236 -22.03221 -21.30117 -20.72004 -19.97928 -18.14097 -17.76953 -16.56374 -15.67077 -15.20263 -14.90456 -14.67009 -14.37805 -14.05439 -13.87610 -13.74262 -13.52607 -13.08229 -12.98567 -12.58703 -12.48125 -12.13009 -11.97929 -11.75933 -11.29581 -11.17181 -11.04167 -10.94310 -10.93703 -10.51396 -10.20985 -9.72828 -9.39274 -9.02365 -8.91341 -8.59463 -8.33260 -6.72253 -6.64570 -4.02635 1.57797 2.08812 2.56233 3.23084 3.36191 3.38369 3.54146 3.76544 3.91884 4.13272 4.23507 4.43982 4.49937 4.59174 4.73131 4.88130 5.04986 5.14765 5.20133 5.23278 5.25358 5.28919 5.36793 5.39456 5.52883 5.56342 5.58964 5.70049 5.71377 5.76727 5.89641 6.16644 6.34903 6.41731 6.56371 6.62995 6.75251 6.81882 7.41597 7.92998 8.48397 9.25319 10.79849 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.043707 B = 0.002534 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.480736 B =11047.754251 C =11359.327511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.032 3.968 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.588 4.588 8 H 0.065 0.935 9 S -0.188 6.188 10 C -0.090 4.090 11 C -0.094 4.094 12 C 0.056 3.944 13 N -0.523 5.523 14 C 0.041 3.959 15 C -0.151 4.151 16 C 0.151 3.849 17 H 0.120 0.880 18 N -0.361 5.361 19 C 0.054 3.946 20 C -0.275 4.275 21 C 0.042 3.958 22 N -0.295 5.295 23 C 0.036 3.964 24 H 0.277 0.723 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.183 0.817 38 H 0.053 0.947 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 -22.110 -4.397 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.178 4.178 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.736 4.736 8 H 0.083 0.917 9 S 0.040 5.960 10 C -0.240 4.240 11 C -0.133 4.133 12 C -0.073 4.073 13 N -0.247 5.247 14 C -0.087 4.087 15 C -0.190 4.190 16 C 0.048 3.952 17 H 0.138 0.862 18 N -0.143 5.143 19 C -0.092 4.092 20 C -0.305 4.305 21 C -0.144 4.144 22 N -0.116 5.116 23 C -0.093 4.093 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.187 0.813 36 H 0.165 0.835 37 H 0.200 0.800 38 H 0.071 0.929 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.422 -20.816 -3.048 22.309 hybrid contribution 2.993 -1.076 -1.329 3.447 sum 10.415 -21.893 -4.377 24.636 Atomic orbital electron populations 1.70774 1.06667 1.30936 1.43733 1.26089 0.96394 1.02204 0.93077 0.83287 0.74429 0.73924 0.77074 1.21027 1.20499 1.21321 1.23556 0.95622 0.91273 1.63198 0.91651 1.84167 1.12531 1.01992 1.97339 1.23040 1.01464 0.96447 1.03019 1.21288 0.96928 0.91680 1.03375 1.22391 0.97149 0.86843 1.00964 1.63611 1.27507 1.02656 1.30971 1.22891 0.99923 0.95913 0.89936 1.23219 1.01002 0.98289 0.96494 1.22446 0.84412 0.91346 0.97026 0.86243 1.48664 1.20769 1.19614 1.25282 1.22488 0.91503 1.00945 0.94247 1.21520 1.04247 0.98906 1.05817 1.23911 0.94732 1.00292 0.95427 1.77393 1.15557 0.98053 1.20604 1.23405 0.93995 0.90733 1.01194 0.91051 0.92122 0.91845 0.90582 0.91595 0.94527 0.90618 0.89421 0.91202 0.89340 0.90421 0.81273 0.83532 0.80025 0.92863 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.67 55.49 0.76 -26.59 16 2 C 0.03 0.94 5.49 -17.43 -0.10 0.85 16 3 Si 1.09 25.09 29.92 -169.99 -5.09 20.00 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.59 -17.06 9.50 30.94 0.29 -16.77 16 8 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 9 S -0.19 -4.86 20.46 -107.50 -2.20 -7.06 16 10 C -0.09 -1.79 5.67 37.16 0.21 -1.58 16 11 C -0.09 -1.47 5.25 -26.73 -0.14 -1.61 16 12 C 0.06 0.70 4.54 -3.82 -0.02 0.69 16 13 N -0.52 -5.81 5.16 -231.24 -1.19 -7.01 16 14 C 0.04 0.39 6.20 -2.84 -0.02 0.37 16 15 C -0.15 -1.15 6.37 -24.91 -0.16 -1.31 16 16 C 0.15 1.37 4.15 -65.79 -0.27 1.09 16 17 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 18 N -0.36 -3.66 3.65 -52.79 -0.19 -3.85 16 19 C 0.05 0.47 10.57 -17.23 -0.18 0.29 16 20 C -0.28 -2.31 10.80 -40.01 -0.43 -2.74 16 21 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 22 N -0.30 -3.40 12.58 30.62 0.39 -3.02 16 23 C 0.04 0.36 6.38 -2.30 -0.01 0.34 16 24 H 0.28 8.64 7.12 -40.82 -0.29 8.35 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.03 7.14 -51.93 -0.37 0.66 16 29 H 0.04 0.44 7.96 -51.93 -0.41 0.03 16 30 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.69 6.91 -51.93 -0.36 0.33 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.54 6.37 -51.93 -0.33 0.21 16 35 H 0.17 1.06 6.97 -52.49 -0.37 0.70 16 36 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.05 0.54 7.81 -51.93 -0.41 0.14 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -33.17 332.97 -9.51 -42.68 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.97 Total: 0.03 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.04 Total: -20.21 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.24 Total: -40.46 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.20 Total: -7.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.17 -9.51 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291652586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.917 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds