Wall clock time and date at job start Tue Mar 31 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86792 * 120.00178 * 2 1 4 4 H 1.48503 * 109.47363 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47076 * 150.00042 * 3 2 1 6 6 H 1.48504 * 109.47349 * 30.00173 * 3 2 1 7 7 C 1.38805 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00169 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.80995 * 100.00226 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47427 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47428 * 174.86182 * 12 11 10 14 14 C 1.47895 * 111.00110 * 175.71329 * 13 12 11 15 15 C 1.53995 * 107.05842 * 214.15387 * 14 13 12 16 16 C 1.54590 * 105.13663 * 1.22255 * 15 14 13 17 17 H 1.09004 * 110.72608 * 263.59686 * 16 15 14 18 18 N 1.46506 * 110.72165 * 140.31552 * 16 15 14 19 19 C 1.34939 * 126.03850 * 326.45520 * 18 16 15 20 20 C 1.35321 * 107.74855 * 179.97438 * 19 18 16 21 21 C 1.39869 * 107.91601 * 359.97438 * 20 19 18 22 22 N 1.30838 * 108.20517 * 359.74686 * 21 20 19 23 23 C 1.48527 * 111.00064 * 58.31171 * 13 12 11 24 24 H 0.96998 * 119.99315 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46820 * 300.00007 * 10 9 7 26 26 H 1.08996 * 109.46973 * 59.99338 * 10 9 7 27 27 H 1.08995 * 109.47488 * 299.99943 * 11 10 9 28 28 H 1.09009 * 109.47147 * 60.00055 * 11 10 9 29 29 H 1.09005 * 109.47318 * 294.86316 * 12 11 10 30 30 H 1.09001 * 109.47019 * 54.85926 * 12 11 10 31 31 H 1.09005 * 109.91834 * 333.50527 * 14 13 12 32 32 H 1.09006 * 109.92003 * 94.79569 * 14 13 12 33 33 H 1.08998 * 110.30582 * 120.14190 * 15 14 13 34 34 H 1.09002 * 110.30937 * 242.30622 * 15 14 13 35 35 H 1.08000 * 126.12889 * 359.95484 * 19 18 16 36 36 H 1.07994 * 126.04375 * 180.02562 * 20 19 18 37 37 H 1.08001 * 125.89677 * 179.97438 * 21 20 19 38 38 H 1.09000 * 110.66822 * 278.15457 * 23 13 12 39 39 H 1.09005 * 110.66376 * 41.29033 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 3.5479 1.4400 0.7000 6 1 1.4479 2.6527 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2023 0.0001 10 6 4.0865 -2.9847 -0.0001 11 6 5.5956 -3.2365 -0.0002 12 6 5.8613 -4.7433 0.0002 13 7 7.3048 -4.9861 -0.1240 14 6 7.6099 -6.4298 -0.0245 15 6 8.9718 -6.5560 0.6832 16 6 9.3969 -5.1043 1.0022 17 1 10.0693 -4.7217 0.2344 18 7 10.0207 -5.0258 2.3256 19 6 9.6981 -5.7743 3.4009 20 6 10.5026 -5.3980 4.4219 21 6 11.3461 -4.3851 3.9541 22 7 11.0620 -4.1651 2.6960 23 6 8.0509 -4.3371 0.9842 24 1 -0.4849 0.8401 -0.0004 25 1 3.6432 -3.4319 0.8896 26 1 3.6438 -3.4315 -0.8903 27 1 6.0385 -2.7895 -0.8901 28 1 6.0386 -2.7896 0.8899 29 1 5.4989 -5.1759 0.9328 30 1 5.3417 -5.2041 -0.8400 31 1 6.8396 -6.9327 0.5603 32 1 7.6675 -6.8668 -1.0214 33 1 8.8681 -7.1308 1.6035 34 1 9.6995 -7.0267 0.0221 35 1 8.9344 -6.5370 3.4400 36 1 10.4953 -5.8078 5.4210 37 1 12.1038 -3.8753 4.5307 38 1 8.2133 -3.2805 0.7717 39 1 7.5231 -4.4640 1.9294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291652592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:47 Heat of formation + Delta-G solvation = 76.818387 kcal Electronic energy + Delta-G solvation = -19027.589120 eV Core-core repulsion = 16097.891444 eV Total energy + Delta-G solvation = -2929.697676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.50362 -39.23656 -34.93376 -32.53070 -32.44038 -30.34879 -29.98572 -28.51967 -25.87226 -25.23187 -23.09889 -21.85754 -21.24235 -20.74978 -19.99275 -17.77715 -17.45221 -16.36784 -15.53043 -15.42240 -14.98511 -14.79482 -14.54636 -14.35314 -13.94983 -13.55472 -13.35830 -13.08991 -12.93671 -12.84794 -12.07709 -12.02372 -11.91442 -11.79061 -11.50155 -11.24049 -11.05929 -11.01143 -10.88981 -10.52964 -10.16667 -9.79001 -9.64276 -9.01525 -8.83436 -8.71686 -8.57876 -6.95843 -6.29599 -4.02010 1.65253 2.16659 2.63779 2.98603 3.29839 3.45186 3.52459 3.80317 3.99197 4.14379 4.30935 4.46494 4.53653 4.64823 4.76694 4.81552 4.88421 5.07835 5.10110 5.17571 5.28092 5.30928 5.34106 5.43678 5.53837 5.54349 5.64343 5.64893 5.70465 5.78007 5.91459 6.13834 6.38454 6.42200 6.52051 6.58843 6.76900 6.81259 7.49201 7.94280 8.42757 9.16400 10.79927 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.003120 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.025177 B = 8971.932427 C = 9672.690007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.238 1.238 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.088 0.912 9 S -0.214 6.214 10 C -0.082 4.082 11 C -0.100 4.100 12 C 0.053 3.947 13 N -0.512 5.512 14 C 0.036 3.964 15 C -0.141 4.141 16 C 0.156 3.844 17 H 0.118 0.882 18 N -0.362 5.362 19 C 0.053 3.947 20 C -0.275 4.275 21 C 0.042 3.958 22 N -0.294 5.294 23 C 0.027 3.973 24 H 0.270 0.730 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.183 0.817 38 H 0.097 0.903 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.497 -14.998 4.883 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.162 1.162 6 H -0.201 1.201 7 C -0.650 4.650 8 H 0.106 0.894 9 S 0.013 5.987 10 C -0.231 4.231 11 C -0.139 4.139 12 C -0.077 4.077 13 N -0.236 5.236 14 C -0.092 4.092 15 C -0.180 4.180 16 C 0.053 3.947 17 H 0.136 0.864 18 N -0.144 5.144 19 C -0.094 4.094 20 C -0.304 4.304 21 C -0.144 4.144 22 N -0.114 5.114 23 C -0.102 4.102 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.200 0.800 38 H 0.115 0.885 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.397 -13.128 3.194 25.305 hybrid contribution -1.382 -1.067 1.586 2.359 sum 20.015 -14.195 4.780 24.999 Atomic orbital electron populations 1.69940 1.05931 1.27729 1.48296 1.24799 0.94516 0.99034 0.93321 0.86668 0.81730 0.83183 0.79757 1.19313 1.16195 1.20078 1.22121 0.87067 0.97402 1.58405 0.89429 1.84188 1.11695 1.05257 1.97526 1.23001 0.97104 0.99350 1.03647 1.21364 0.95289 0.93940 1.03286 1.22392 0.86638 0.97747 1.00900 1.64817 1.08791 1.07900 1.42095 1.22876 0.95084 0.90065 1.01172 1.22853 0.98173 0.95109 1.01831 1.22205 0.94641 0.96809 0.81074 0.86368 1.48728 1.27488 1.28665 1.09536 1.22440 1.00980 0.98254 0.87678 1.21508 1.03022 1.05023 1.00883 1.23913 1.00185 0.97794 0.92476 1.77406 1.04518 1.14298 1.15209 1.23636 0.92080 1.00391 0.94044 0.91960 0.91603 0.91279 0.90405 0.91722 0.94441 0.89967 0.92984 0.89406 0.90298 0.89478 0.81316 0.83570 0.80046 0.88486 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 2 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.50 -14.64 10.04 30.94 0.31 -14.33 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.21 -5.26 19.41 -107.50 -2.09 -7.35 16 10 C -0.08 -1.57 5.67 37.15 0.21 -1.36 16 11 C -0.10 -1.52 4.90 -26.74 -0.13 -1.65 16 12 C 0.05 0.63 4.84 -3.82 -0.02 0.62 16 13 N -0.51 -5.47 5.35 -230.45 -1.23 -6.70 16 14 C 0.04 0.29 6.70 -2.76 -0.02 0.27 16 15 C -0.14 -0.98 6.52 -25.38 -0.17 -1.15 16 16 C 0.16 1.46 4.17 -66.07 -0.28 1.18 16 17 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 18 N -0.36 -3.84 3.63 -53.06 -0.19 -4.04 16 19 C 0.05 0.47 10.43 -17.23 -0.18 0.29 16 20 C -0.27 -2.45 10.80 -40.01 -0.43 -2.88 16 21 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 22 N -0.29 -3.61 12.58 30.62 0.39 -3.22 16 23 C 0.03 0.29 5.04 -1.90 -0.01 0.28 16 24 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.07 1.26 8.14 -51.91 -0.42 0.84 16 26 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.00 7.18 -51.92 -0.37 0.63 16 29 H 0.04 0.44 7.97 -51.93 -0.41 0.03 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.48 6.05 -51.93 -0.31 0.16 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.17 1.05 7.02 -52.49 -0.37 0.68 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.10 1.17 7.77 -51.93 -0.40 0.76 16 39 H 0.05 0.61 8.02 -51.93 -0.42 0.20 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -32.76 331.39 -9.16 -41.91 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.07 Total: -0.57 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.01 Total: -15.92 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.27 Total: -40.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -2.09 Total: -7.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.76 -9.16 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291652592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.732 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds