Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99881 * 2 1 4 4 C 1.53004 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46847 * 175.00320 * 4 3 2 6 6 N 1.46503 * 109.46995 * 294.99724 * 4 3 2 7 7 C 1.34768 * 120.00335 * 275.00458 * 6 4 3 8 8 O 1.21290 * 120.00045 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00448 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47451 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46870 * 179.97438 * 10 9 7 12 12 H 1.07995 * 120.00584 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99641 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99582 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47566 * 60.00026 * 15 13 11 17 17 H 1.48503 * 109.46545 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47095 * 299.99465 * 15 13 11 19 19 C 1.50696 * 109.47466 * 54.99946 * 4 3 2 20 20 C 1.34512 * 125.79090 * 100.02284 * 19 4 3 21 21 C 1.41379 * 106.84332 * 180.02562 * 20 19 4 22 22 C 1.34512 * 106.84086 * 0.02562 * 21 20 19 23 23 C 1.50695 * 125.79226 * 179.97438 * 22 21 20 24 24 O 1.34301 * 125.79037 * 280.02880 * 19 4 3 25 25 H 1.09004 * 109.47118 * 299.99803 * 1 2 3 26 26 H 1.08993 * 109.47181 * 59.99831 * 1 2 3 27 27 H 1.08998 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47255 * 60.00266 * 3 2 1 29 29 H 1.09008 * 109.47462 * 300.00037 * 3 2 1 30 30 H 0.96998 * 119.99304 * 94.99925 * 6 4 3 31 31 H 1.08997 * 109.46797 * 299.99915 * 9 7 6 32 32 H 1.09003 * 109.46887 * 59.99813 * 9 7 6 33 33 H 1.08992 * 109.47364 * 300.00483 * 10 9 7 34 34 H 1.09003 * 109.46824 * 60.00269 * 10 9 7 35 35 H 0.96993 * 119.99985 * 179.97438 * 14 13 11 36 36 H 1.08007 * 126.58045 * 0.02562 * 20 19 4 37 37 H 1.07997 * 126.58312 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.47797 * 179.97438 * 23 22 21 39 39 H 1.09006 * 109.47078 * 299.99936 * 23 22 21 40 40 H 1.09005 * 109.47246 * 59.99506 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9784 2.1765 -0.0902 6 7 3.9767 0.5639 1.2509 7 6 4.1662 1.3220 2.3489 8 8 3.9720 2.5183 2.3008 9 6 4.6195 0.6836 3.6365 10 6 4.7573 1.7575 4.7176 11 6 5.2100 1.1188 6.0052 12 1 5.3826 0.0536 6.0482 13 6 5.4038 1.8945 7.1286 14 7 5.1932 3.1916 7.0764 15 14 5.9656 1.1028 8.7246 16 1 7.2787 0.4420 8.5141 17 1 6.0980 2.1450 9.7742 18 1 4.9661 0.0923 9.1545 19 6 3.9715 0.3327 -1.1648 20 6 4.4497 0.7876 -2.3368 21 6 4.7306 -0.3467 -3.1326 22 6 4.4067 -1.4270 -2.3994 23 6 4.5367 -2.8623 -2.8398 24 8 3.9484 -1.0094 -1.2081 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 4.1323 -0.3927 1.2893 31 1 3.8859 -0.0582 3.9522 32 1 5.5833 0.1984 3.4819 33 1 5.4911 2.4990 4.4017 34 1 3.7937 2.2429 4.8723 35 1 5.3291 3.7371 7.8668 36 1 4.5918 1.8211 -2.6164 37 1 5.1280 -0.3461 -4.1368 38 1 4.1995 -3.5202 -2.0388 39 1 3.9255 -3.0269 -3.7272 40 1 5.5797 -3.0780 -3.0719 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291860345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = -80.958433 kcal Electronic energy + Delta-G solvation = -21869.974300 eV Core-core repulsion = 18458.389286 eV Total energy + Delta-G solvation = -3411.585014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.68770 -39.39398 -37.79742 -34.95766 -33.42931 -33.25398 -32.12270 -31.04174 -29.65110 -27.02214 -25.85372 -25.49781 -23.00827 -21.83825 -21.34279 -20.08134 -19.60365 -17.47382 -16.81764 -16.47384 -16.38008 -15.68559 -15.58476 -15.42417 -14.97779 -14.53746 -14.40171 -13.70727 -13.37913 -13.26872 -13.04824 -12.86204 -12.79349 -12.61605 -12.27670 -12.14682 -11.99402 -11.82910 -11.35570 -11.13986 -10.89175 -10.60201 -9.95446 -9.92852 -9.78073 -9.65154 -9.19426 -9.03685 -8.89288 -8.36583 -8.29672 -5.94101 -3.98277 1.60087 2.48011 2.74965 3.21462 3.36315 3.40347 3.41845 3.47740 3.73427 4.38090 4.49522 4.75171 4.91556 4.96069 5.10588 5.16467 5.21275 5.28785 5.30634 5.33458 5.40793 5.44414 5.52917 5.56396 5.68479 5.75077 5.87909 6.02378 6.26184 6.28514 6.40774 6.61005 6.91726 7.01643 7.14652 7.76268 7.87608 7.88464 8.09141 8.40775 8.73835 9.09930 9.65040 11.16856 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.003453 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.525535 B = 8107.611711 C = 8516.166249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.234 3.766 5 H 0.127 0.873 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.537 6.537 9 C -0.129 4.129 10 C 0.038 3.962 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.005 4.005 20 C -0.202 4.202 21 C -0.215 4.215 22 C -0.014 4.014 23 C -0.073 4.073 24 O -0.157 6.157 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.405 0.595 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.261 0.739 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 -9.860 -22.010 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.030 4.030 4 C 0.128 3.872 5 H 0.145 0.855 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.056 4.056 20 C -0.222 4.222 21 C -0.234 4.234 22 C -0.065 4.065 23 C -0.129 4.129 24 O -0.052 6.052 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.240 0.760 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.514 -9.162 -21.672 24.166 hybrid contribution 0.167 -0.407 0.637 0.774 sum -5.348 -9.569 -21.034 23.719 Atomic orbital electron populations 1.22716 0.81254 1.02567 0.99871 1.87925 1.19427 1.27069 1.95400 1.23069 0.92842 0.85585 1.01459 1.19486 0.92423 0.95410 0.79854 0.85507 1.46195 1.70855 1.12108 1.09459 1.21639 0.75478 0.87303 0.85275 1.90665 1.50571 1.15291 1.84695 1.21873 1.01319 1.01872 0.91845 1.18894 0.98295 0.92394 0.90378 1.21195 1.46013 0.94111 0.95244 0.92636 1.25022 0.95578 0.94814 0.98950 1.69984 1.48857 1.04558 1.29504 0.86649 0.79215 0.78901 0.83141 1.20242 1.21307 1.20255 1.22192 1.04677 0.80885 0.97834 1.21531 1.06206 1.00328 0.94137 1.21482 1.08645 0.91494 1.01752 1.22448 1.02385 0.97165 0.84462 1.20286 1.03239 0.87619 1.01792 1.83987 1.65163 1.21883 1.34200 0.93932 0.94406 0.89767 0.91295 0.92362 0.76046 0.90074 0.90129 0.95785 0.95826 0.92916 0.83400 0.83634 0.90512 0.89876 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.08 10.02 -35.23 -0.35 -5.43 16 3 C 0.05 0.63 5.73 37.16 0.21 0.85 16 4 C 0.23 3.23 2.83 -69.08 -0.20 3.03 16 5 H 0.13 1.77 7.57 -51.93 -0.39 1.37 16 6 N -0.73 -11.31 5.02 -54.93 -0.28 -11.59 16 7 C 0.51 10.02 7.79 -10.99 -0.09 9.94 16 8 O -0.54 -12.34 15.65 5.55 0.09 -12.25 16 9 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 10 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 11 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.00 -0.06 5.67 -35.63 -0.20 -0.26 16 20 C -0.20 -2.36 10.80 -39.70 -0.43 -2.79 16 21 C -0.21 -2.29 10.81 -39.70 -0.43 -2.71 16 22 C -0.01 -0.15 7.32 -35.63 -0.26 -0.41 16 23 C -0.07 -0.51 10.42 36.00 0.38 -0.13 16 24 O -0.16 -2.07 10.18 5.71 0.06 -2.01 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.41 5.67 8.32 -40.82 -0.34 5.33 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -34.70 347.53 -6.31 -41.01 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.19 Total: 1.87 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.59 Total: -6.81 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.46 Total: -38.43 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.21 Total: -19.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.70 -6.31 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291860345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.953 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds