Wall clock time and date at job start Tue Mar 31 2020 05:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00404 * 2 1 4 4 C 1.52995 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47205 * 185.00372 * 4 3 2 6 6 N 1.46496 * 109.47468 * 64.99618 * 4 3 2 7 7 C 1.34774 * 119.99544 * 85.00158 * 6 4 3 8 8 O 1.21279 * 120.00472 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00020 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99493 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99862 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47162 * 90.00212 * 15 13 11 17 17 H 1.48498 * 109.46805 * 210.00384 * 15 13 11 18 18 H 1.48494 * 109.47357 * 330.00050 * 15 13 11 19 19 C 1.50707 * 109.47004 * 304.99811 * 4 3 2 20 20 C 1.34516 * 125.79254 * 260.00293 * 19 4 3 21 21 C 1.41374 * 106.84135 * 180.02562 * 20 19 4 22 22 C 1.34518 * 106.84301 * 359.97438 * 21 20 19 23 23 C 1.50699 * 125.78903 * 180.02562 * 22 21 20 24 24 O 1.34300 * 108.41831 * 359.74198 * 22 21 20 25 25 H 1.08997 * 109.47210 * 59.99924 * 1 2 3 26 26 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46939 * 300.00194 * 1 2 3 28 28 H 1.09004 * 109.46844 * 59.99674 * 3 2 1 29 29 H 1.08998 * 109.46595 * 300.00452 * 3 2 1 30 30 H 0.96994 * 120.00700 * 265.00278 * 6 4 3 31 31 H 1.09001 * 109.46953 * 299.99667 * 9 7 6 32 32 H 1.09000 * 109.47318 * 59.99264 * 9 7 6 33 33 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 34 34 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 35 35 H 0.96999 * 119.99718 * 179.97438 * 14 13 11 36 36 H 1.08002 * 126.57668 * 359.96138 * 20 19 4 37 37 H 1.08001 * 126.58173 * 180.02562 * 21 20 19 38 38 H 1.09005 * 109.46970 * 90.00574 * 23 22 21 39 39 H 1.09001 * 109.47199 * 210.00476 * 23 22 21 40 40 H 1.09001 * 109.47414 * 330.00652 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0890 6 7 3.9757 0.5643 -1.2526 7 6 4.1645 1.3229 -2.3505 8 8 3.9704 2.5190 -2.3019 9 6 4.6169 0.6848 -3.6387 10 6 4.7539 1.7591 -4.7194 11 6 5.2069 1.1210 -6.0073 12 1 5.3793 0.0558 -6.0508 13 6 5.4002 1.8971 -7.1305 14 7 5.1897 3.1942 -7.0776 15 14 5.9609 1.1061 -8.7271 16 1 4.7741 0.6949 -9.5194 17 1 6.7634 2.0817 -9.5077 18 1 6.7910 -0.0871 -8.4236 19 6 3.9724 0.3323 1.1630 20 6 4.4510 0.7867 2.3351 21 6 4.7337 -0.3479 3.1296 22 6 4.4104 -1.4280 2.3959 23 6 4.5424 -2.8635 2.8350 24 8 3.9441 -1.0097 1.2079 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 4.1313 -0.3923 -1.2916 31 1 5.5808 0.1996 -3.4849 32 1 3.8831 -0.0570 -3.9541 33 1 3.7903 2.2446 -4.8733 34 1 5.4881 2.5004 -4.4037 35 1 5.3260 3.7402 -7.8676 36 1 4.5932 1.8201 2.6149 37 1 5.1320 -0.3477 4.1335 38 1 3.6194 -3.1814 3.3200 39 1 4.7317 -3.4934 1.9659 40 1 5.3714 -2.9540 3.5369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291860349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:53 Heat of formation + Delta-G solvation = -80.994502 kcal Electronic energy + Delta-G solvation = -21870.175014 eV Core-core repulsion = 18458.588436 eV Total energy + Delta-G solvation = -3411.586578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.68735 -39.39585 -37.79774 -34.95878 -33.43068 -33.25671 -32.12319 -31.04226 -29.65100 -27.02111 -25.85336 -25.49821 -23.00848 -21.84226 -21.34318 -20.08200 -19.60440 -17.47368 -16.81962 -16.47385 -16.38264 -15.68654 -15.58766 -15.42586 -14.97749 -14.53668 -14.39722 -13.69697 -13.39448 -13.25827 -13.06259 -12.86373 -12.78972 -12.61655 -12.27709 -12.14943 -11.99483 -11.82118 -11.35535 -11.13678 -10.91172 -10.58062 -9.95729 -9.93363 -9.78121 -9.65251 -9.19173 -9.02955 -8.89334 -8.36815 -8.30043 -5.94362 -3.98383 1.60150 2.48079 2.74663 3.21440 3.34978 3.40493 3.43001 3.47916 3.73351 4.37997 4.49444 4.74258 4.91220 4.96110 5.10859 5.16390 5.21673 5.29048 5.30568 5.33477 5.40700 5.44659 5.52662 5.56383 5.68410 5.74767 5.87895 6.02137 6.26153 6.28494 6.40714 6.61047 6.91709 7.01581 7.14551 7.76459 7.87572 7.88337 8.08955 8.40690 8.73817 9.09985 9.64979 11.16632 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003453 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.930256 B = 8107.076061 C = 8516.124740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.234 3.766 5 H 0.128 0.872 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.537 6.537 9 C -0.129 4.129 10 C 0.038 3.962 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.005 4.005 20 C -0.203 4.203 21 C -0.214 4.214 22 C -0.014 4.014 23 C -0.072 4.072 24 O -0.157 6.157 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.405 0.595 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -9.874 22.018 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.030 4.030 4 C 0.128 3.872 5 H 0.145 0.855 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.412 6.412 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.056 4.056 20 C -0.222 4.222 21 C -0.233 4.233 22 C -0.065 4.065 23 C -0.129 4.129 24 O -0.052 6.052 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.240 0.760 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.481 -9.180 21.685 24.177 hybrid contribution 0.147 -0.395 -0.643 0.769 sum -5.334 -9.575 21.042 23.725 Atomic orbital electron populations 1.22715 0.81255 1.02567 0.99870 1.87926 1.19425 1.27069 1.95400 1.23069 0.92848 0.85586 1.01460 1.19484 0.92422 0.95406 0.79857 0.85502 1.46194 1.70887 1.12106 1.09432 1.21638 0.75471 0.87297 0.85287 1.90662 1.50549 1.15298 1.84703 1.21873 1.01328 1.01871 0.91835 1.18901 0.98294 0.92400 0.90406 1.21231 1.45894 0.94138 0.95211 0.92589 1.25024 0.95597 0.94814 0.98964 1.69997 1.48971 1.04535 1.29382 0.86587 0.78676 0.79071 0.83597 1.20693 1.21242 1.19875 1.22203 1.04648 0.80893 0.97828 1.21530 1.06258 1.00329 0.94107 1.21499 1.08697 0.91475 1.01659 1.22453 1.02275 0.97159 0.84590 1.20282 1.03160 0.87611 1.01839 1.83981 1.64907 1.21880 1.34469 0.93940 0.89766 0.94402 0.92356 0.91301 0.76044 0.90126 0.90077 0.95827 0.95776 0.92981 0.83397 0.83639 0.90247 0.90480 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.08 10.01 -35.23 -0.35 -5.43 16 3 C 0.05 0.63 5.73 37.15 0.21 0.84 16 4 C 0.23 3.23 2.83 -69.08 -0.20 3.03 16 5 H 0.13 1.77 7.57 -51.93 -0.39 1.37 16 6 N -0.73 -11.31 5.02 -54.93 -0.28 -11.58 16 7 C 0.51 10.02 7.79 -10.98 -0.09 9.93 16 8 O -0.54 -12.33 15.64 5.56 0.09 -12.24 16 9 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 10 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 11 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.00 -0.06 5.67 -35.62 -0.20 -0.26 16 20 C -0.20 -2.36 10.80 -39.71 -0.43 -2.79 16 21 C -0.21 -2.28 10.81 -39.70 -0.43 -2.71 16 22 C -0.01 -0.15 7.32 -35.62 -0.26 -0.41 16 23 C -0.07 -0.50 10.42 36.01 0.38 -0.13 16 24 O -0.16 -2.07 10.18 5.71 0.06 -2.01 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.41 5.67 8.32 -40.82 -0.34 5.33 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -34.71 347.53 -6.31 -41.02 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.19 Total: 1.82 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.59 Total: -6.79 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.46 Total: -38.40 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.21 Total: -19.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.71 -6.31 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291860349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.973 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds