Wall clock time and date at job start Tue Mar 31 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34769 * 117.00007 * 2 1 4 4 O 1.21531 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.47235 * 120.00051 * 179.97438 * 3 2 1 6 6 C 1.47057 * 127.20078 * 0.03072 * 5 3 2 7 7 C 1.34160 * 105.95226 * 180.18939 * 6 5 3 8 8 C 1.50696 * 125.43305 * 179.73928 * 7 6 5 9 9 H 1.09006 * 109.46683 * 341.68453 * 8 7 6 10 10 C 1.52998 * 109.47036 * 101.68305 * 8 7 6 11 11 N 1.46899 * 109.47223 * 221.68824 * 8 7 6 12 12 C 1.46903 * 111.00094 * 185.32965 * 11 8 7 13 13 C 1.46903 * 111.00309 * 61.36937 * 11 8 7 14 14 C 1.50698 * 109.47162 * 189.99839 * 13 11 8 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00127 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00153 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47114 * 90.00167 * 18 16 14 20 20 H 1.48505 * 109.47378 * 209.99830 * 18 16 14 21 21 H 1.48495 * 109.47235 * 330.00066 * 18 16 14 22 22 O 1.34227 * 109.13885 * 359.63517 * 7 6 5 23 23 C 1.33622 * 110.92343 * 0.38313 * 22 7 6 24 24 C 1.50705 * 125.80548 * 179.79090 * 23 22 7 25 25 H 1.09009 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47195 * 299.99409 * 1 2 3 27 27 H 1.09000 * 109.47332 * 60.00046 * 1 2 3 28 28 H 1.08004 * 127.02862 * 359.92210 * 6 5 3 29 29 H 1.09006 * 109.46578 * 180.02562 * 10 8 7 30 30 H 1.08996 * 109.47367 * 299.99672 * 10 8 7 31 31 H 1.08993 * 109.46970 * 60.00545 * 10 8 7 32 32 H 1.09000 * 109.47042 * 65.50761 * 12 11 8 33 33 H 1.09000 * 109.47050 * 185.50664 * 12 11 8 34 34 H 1.09000 * 109.46537 * 305.50580 * 12 11 8 35 35 H 1.08998 * 109.47083 * 310.00542 * 13 11 8 36 36 H 1.09001 * 109.46469 * 70.00678 * 13 11 8 37 37 H 0.97000 * 120.00143 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.46746 * 269.97945 * 24 23 22 39 39 H 1.09000 * 109.47308 * 29.97924 * 24 23 22 40 40 H 1.09001 * 109.47058 * 149.98103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5341 1.2779 0.0006 6 6 4.4833 0.1547 0.0005 7 6 5.7065 0.7057 0.0054 8 6 7.0074 -0.0551 0.0129 9 1 6.8269 -1.0801 0.3368 10 6 7.6018 -0.0627 -1.3969 11 7 7.9478 0.5921 0.9374 12 6 9.2692 -0.0468 0.8771 13 6 7.4235 0.5887 2.3097 14 6 8.2863 1.4664 3.1793 15 1 9.1387 1.9762 2.7549 16 6 7.9877 1.6187 4.5167 17 7 6.9501 0.9976 5.0336 18 14 9.0567 2.7073 5.5943 19 1 8.5292 4.0953 5.5737 20 1 9.0415 2.1927 6.9873 21 1 10.4493 2.6993 5.0789 22 8 5.5870 2.0426 0.0003 23 6 4.3014 2.4067 0.0004 24 6 3.7862 3.8230 -0.0001 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.2446 -0.8987 0.0013 29 1 8.5425 -0.6134 -1.3915 30 1 6.9040 -0.5430 -2.0828 31 1 7.7822 0.9623 -1.7206 32 1 9.7071 0.1164 -0.1077 33 1 9.9173 0.3861 1.6391 34 1 9.1637 -1.1170 1.0550 35 1 6.4021 0.9691 2.3094 36 1 7.4321 -0.4293 2.6993 37 1 6.7402 1.1044 5.9746 38 1 3.6618 4.1647 1.0275 39 1 4.4984 4.4686 -0.5140 40 1 2.8257 3.8600 -0.5141 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292640118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:43 Heat of formation + Delta-G solvation = -67.820901 kcal Electronic energy + Delta-G solvation = -22502.034867 eV Core-core repulsion = 19091.019539 eV Total energy + Delta-G solvation = -3411.015328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32848 -39.98728 -37.24879 -36.32758 -33.03962 -32.82026 -31.86626 -30.18533 -28.17122 -27.32557 -26.22100 -25.16291 -23.26934 -22.14489 -21.16254 -20.45680 -19.09595 -17.35644 -16.67468 -16.36453 -16.17664 -15.72720 -15.53490 -15.02856 -14.64390 -14.31094 -13.58947 -13.47568 -13.22449 -13.03776 -12.86998 -12.69090 -12.64260 -12.10400 -11.99289 -11.98103 -11.89653 -11.45128 -11.18494 -11.00333 -10.84951 -10.76703 -10.59980 -10.44660 -10.37685 -9.89561 -9.50418 -9.23412 -8.45045 -8.10571 -7.36137 -6.02671 -4.04187 1.39728 2.30849 2.73435 3.14869 3.26664 3.32085 3.37996 3.41127 4.40406 4.57537 4.81478 4.98469 5.06211 5.08553 5.13972 5.32841 5.41077 5.44732 5.46860 5.52133 5.66378 5.73325 5.82218 5.91804 5.99543 6.04452 6.15451 6.22908 6.31395 6.40651 6.47020 6.59709 6.70758 7.22813 7.27570 7.44490 7.77155 7.89017 8.03342 8.13589 8.49109 9.02672 9.59618 11.08216 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.005138 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.647878 B = 5447.941668 C = 6283.393347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.352 6.352 3 C 0.547 3.453 4 O -0.519 6.519 5 C -0.243 4.243 6 C -0.181 4.181 7 C 0.033 3.967 8 C 0.153 3.847 9 H 0.064 0.936 10 C -0.144 4.144 11 N -0.534 5.534 12 C 0.034 3.966 13 C 0.193 3.807 14 C -0.507 4.507 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 O -0.140 6.140 23 C 0.093 3.907 24 C -0.084 4.084 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.157 0.843 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.013 0.987 35 H 0.031 0.969 36 H -0.008 1.008 37 H 0.261 0.739 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -2.137 -12.700 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.394 3.606 4 O -0.410 6.410 5 C -0.246 4.246 6 C -0.201 4.201 7 C -0.016 4.016 8 C 0.044 3.956 9 H 0.081 0.919 10 C -0.202 4.202 11 N -0.260 5.260 12 C -0.114 4.114 13 C 0.068 3.932 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 O -0.034 6.034 23 C 0.039 3.961 24 C -0.140 4.140 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.174 0.826 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.009 0.991 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.281 -1.216 -12.671 14.664 hybrid contribution -0.036 -0.485 1.159 1.257 sum -7.317 -1.701 -11.512 13.747 Atomic orbital electron populations 1.23233 0.76469 1.03492 1.02428 1.86588 1.23057 1.32693 1.84510 1.19994 0.87542 0.81166 0.71876 1.90785 1.66640 1.35853 1.47716 1.19956 0.90124 0.94034 1.20467 1.22430 0.90125 0.99249 1.08249 1.22195 0.96517 0.79690 1.03217 1.20208 0.86849 0.93390 0.95164 0.91870 1.21921 1.00744 1.02970 0.94536 1.62247 1.01591 1.52072 1.10053 1.22289 0.91999 0.95809 1.01277 1.19769 0.96229 0.95753 0.81457 1.21117 1.12424 1.27970 0.93029 0.91784 1.24983 0.95451 0.96088 0.98031 1.69966 1.27186 1.43062 1.13449 0.86505 0.80746 0.80678 0.79523 1.20631 1.21328 1.19818 1.83876 1.25764 1.24278 1.69470 1.22777 0.80971 0.96425 0.95922 1.20619 1.01827 0.86839 1.04721 0.88210 0.91891 0.92055 0.82557 0.91565 0.92453 0.91507 0.92985 0.90165 0.96896 0.95088 0.99066 0.92926 0.88942 0.90034 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.35 -5.17 10.48 -40.68 -0.43 -5.60 16 3 C 0.55 9.12 7.95 34.39 0.27 9.40 16 4 O -0.52 -8.98 14.64 -19.29 -0.28 -9.26 16 5 C -0.24 -4.29 6.32 -103.30 -0.65 -4.94 16 6 C -0.18 -3.15 10.92 -37.44 -0.41 -3.55 16 7 C 0.03 0.62 4.51 -35.75 -0.16 0.46 16 8 C 0.15 2.71 2.52 -68.87 -0.17 2.54 16 9 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 10 C -0.14 -2.01 8.77 37.16 0.33 -1.68 16 11 N -0.53 -11.38 4.61 -237.73 -1.10 -12.48 16 12 C 0.03 0.64 8.77 60.07 0.53 1.17 16 13 C 0.19 5.04 4.57 -4.98 -0.02 5.02 16 14 C -0.51 -14.26 8.38 -34.44 -0.29 -14.55 16 15 H 0.06 1.78 7.17 -52.49 -0.38 1.40 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 O -0.14 -2.74 10.51 7.70 0.08 -2.66 16 23 C 0.09 1.64 7.38 -34.93 -0.26 1.38 16 24 C -0.08 -1.17 9.89 36.01 0.36 -0.81 16 25 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.16 2.37 8.06 -52.48 -0.42 1.94 16 29 H 0.07 0.83 6.46 -51.93 -0.34 0.49 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 33 H 0.08 1.63 6.65 -51.93 -0.35 1.28 16 34 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 35 H 0.03 0.89 6.81 -51.93 -0.35 0.54 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.36 6.49 -51.93 -0.34 1.02 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -32.66 338.24 -6.29 -38.95 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.87 Total: -1.95 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.49 Total: -2.63 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.36 Total: -38.68 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.63 Total: -17.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.66 -6.29 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292640118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.868 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds