Wall clock time and date at job start Tue Mar 31 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46999 * 2 1 4 4 H 1.09001 * 109.47148 * 305.35453 * 3 2 1 5 5 O 1.42902 * 109.46946 * 65.35627 * 3 2 1 6 6 C 1.42894 * 113.99839 * 259.03908 * 5 3 2 7 7 C 1.50706 * 109.46888 * 185.35489 * 3 2 1 8 8 O 1.21280 * 119.99860 * 253.71675 * 7 3 2 9 9 N 1.34774 * 119.99724 * 73.72533 * 7 3 2 10 10 C 1.46498 * 120.00406 * 5.51608 * 9 7 3 11 11 C 1.50704 * 109.46843 * 94.27135 * 10 9 7 12 12 H 1.07995 * 120.00404 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99685 * 179.97438 * 11 10 9 14 14 N 1.31521 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00332 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47241 * 89.99746 * 15 13 11 17 17 H 1.48497 * 109.47181 * 209.99863 * 15 13 11 18 18 H 1.48499 * 109.46723 * 329.99719 * 15 13 11 19 19 C 1.46499 * 119.99767 * 185.52143 * 9 7 3 20 20 C 1.50699 * 109.47241 * 89.99829 * 19 9 7 21 21 C 1.34510 * 125.78950 * 90.00016 * 20 19 9 22 22 C 1.41383 * 106.84093 * 180.02562 * 21 20 19 23 23 C 1.34516 * 106.84150 * 0.02562 * 22 21 20 24 24 O 1.34304 * 125.78785 * 269.69133 * 20 19 9 25 25 H 1.08991 * 109.47260 * 297.74494 * 1 2 3 26 26 H 1.09007 * 109.46699 * 57.74285 * 1 2 3 27 27 H 1.08993 * 109.46913 * 177.73633 * 1 2 3 28 28 H 1.08994 * 109.47371 * 240.00209 * 2 1 3 29 29 H 1.08993 * 109.47215 * 120.00194 * 2 1 3 30 30 H 1.08997 * 109.47210 * 54.33287 * 6 5 3 31 31 H 1.08991 * 109.47222 * 294.32977 * 6 5 3 32 32 H 1.09007 * 109.46740 * 174.32807 * 6 5 3 33 33 H 1.09000 * 109.47570 * 214.27449 * 10 9 7 34 34 H 1.09005 * 109.47152 * 334.27478 * 10 9 7 35 35 H 0.96998 * 120.00238 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.46847 * 209.99664 * 19 9 7 37 37 H 1.09001 * 109.47490 * 329.99779 * 19 9 7 38 38 H 1.07997 * 126.58347 * 0.03152 * 21 20 19 39 39 H 1.07996 * 126.58235 * 179.97438 * 22 21 20 40 40 H 1.08000 * 125.79172 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6005 1.9833 -0.8382 5 8 1.6691 2.0789 1.2246 6 6 0.5305 2.9351 1.1130 7 6 3.5412 1.4446 -0.1326 8 8 4.2344 1.7084 0.8270 9 7 4.1134 1.1534 -1.3176 10 6 3.2786 0.9537 -2.5048 11 6 3.1695 2.2499 -3.2659 12 1 3.6720 3.1338 -2.9019 13 6 2.4289 2.3070 -4.4274 14 7 2.3340 3.4380 -5.0919 15 14 1.5601 0.7779 -5.0574 16 1 0.1925 0.7132 -4.4824 17 1 1.4721 0.8335 -6.5388 18 1 2.3252 -0.4285 -4.6519 19 6 5.5702 1.0365 -1.4185 20 6 5.9790 -0.3901 -1.1562 21 6 6.1009 -1.3567 -2.0836 22 6 6.5016 -2.5293 -1.4030 23 6 6.6001 -2.2093 -0.1001 24 8 6.2891 -0.9105 0.0425 25 1 -0.3633 0.4784 0.9094 26 1 -0.3633 0.5485 -0.8691 27 1 -0.3633 -1.0268 -0.0406 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 -0.3023 2.3780 0.6839 31 1 0.7730 3.7799 0.4686 32 1 0.2523 3.3002 2.1017 33 1 3.7303 0.1945 -3.1432 34 1 2.2846 0.6270 -2.1992 35 1 1.8127 3.4783 -5.9089 36 1 5.8897 1.3278 -2.4191 37 1 6.0391 1.6899 -0.6827 38 1 5.9263 -1.2563 -3.1447 39 1 6.6913 -3.4966 -1.8441 40 1 6.8867 -2.8811 0.6954 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299483363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:30 Heat of formation + Delta-G solvation = -61.797603 kcal Electronic energy + Delta-G solvation = -23231.326456 eV Core-core repulsion = 19820.572318 eV Total energy + Delta-G solvation = -3410.754138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -42.26494 -39.64454 -37.34533 -35.33095 -33.15341 -32.77507 -32.56308 -30.58980 -28.16546 -27.93767 -26.03005 -24.59905 -22.76032 -21.60253 -21.38280 -20.40562 -18.82978 -17.30663 -17.01915 -16.83747 -16.26757 -15.83402 -15.36993 -14.91443 -14.61891 -14.32504 -14.23879 -13.72200 -13.26355 -13.00142 -12.69241 -12.59446 -12.51926 -12.44472 -12.22695 -12.03048 -11.76294 -11.43790 -11.32384 -11.11008 -10.97476 -10.75531 -10.49185 -10.36808 -9.73756 -9.66268 -9.57370 -8.91658 -8.79889 -8.24573 -7.94847 -6.29733 -4.32612 1.93562 2.80218 3.09811 3.10842 3.19172 3.20847 3.37518 3.57906 4.18573 4.36307 4.92629 5.00396 5.05143 5.15526 5.26209 5.28685 5.31282 5.51195 5.54957 5.63106 5.73053 5.82625 5.88381 5.96227 6.01851 6.02461 6.09119 6.18015 6.22183 6.28014 6.35283 6.41698 6.59235 6.74383 7.11762 7.34294 7.41310 7.43660 7.98286 8.31078 8.73836 8.83060 9.28762 10.82549 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.008312 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.836598 B = 3367.728477 C = 4755.781949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.137 4.137 3 C 0.073 3.927 4 H 0.102 0.898 5 O -0.362 6.362 6 C 0.024 3.976 7 C 0.520 3.480 8 O -0.540 6.540 9 N -0.587 5.587 10 C 0.202 3.798 11 C -0.546 4.546 12 H 0.081 0.919 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.866 3.134 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.196 3.804 20 C -0.015 4.015 21 C -0.205 4.205 22 C -0.217 4.217 23 C -0.050 4.050 24 O -0.167 6.167 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.267 0.733 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -9.365 6.524 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C 0.012 3.988 4 H 0.120 0.880 5 O -0.280 6.280 6 C -0.072 4.072 7 C 0.307 3.693 8 O -0.417 6.417 9 N -0.319 5.319 10 C 0.081 3.919 11 C -0.585 4.585 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.692 3.308 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 C 0.072 3.928 20 C -0.067 4.067 21 C -0.225 4.225 22 C -0.236 4.236 23 C -0.119 4.119 24 O -0.062 6.062 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.482 -8.971 7.303 11.578 hybrid contribution -0.709 -0.944 -1.088 1.605 sum -0.226 -9.915 6.216 11.705 Atomic orbital electron populations 1.21837 0.95113 1.01915 1.02120 1.21944 0.96823 0.95402 1.03300 1.22024 0.92696 0.95011 0.89036 0.87979 1.87950 1.47654 1.62053 1.30350 1.22964 0.88281 0.93613 1.02374 1.20431 0.90005 0.76334 0.82516 1.90629 1.64460 1.48205 1.38373 1.47883 1.05661 1.68873 1.09533 1.20004 0.90452 0.98282 0.83135 1.21384 1.33144 0.95795 1.08128 0.90125 1.24858 0.95736 0.95847 0.96077 1.69886 1.40165 1.25379 1.16999 0.87003 0.80817 0.84037 0.78975 1.19712 1.20707 1.18639 1.19714 0.81897 0.87049 1.04119 1.23265 1.03251 0.97958 0.82223 1.21667 1.07431 0.92590 1.00768 1.21785 1.08000 1.00020 0.93833 1.23983 1.05804 0.83528 0.98551 1.84117 1.65954 1.23148 1.32972 0.92149 0.92306 0.92435 0.90138 0.90983 0.93599 0.93631 0.89827 0.94598 0.94601 0.92242 0.86535 0.88807 0.83395 0.83848 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.86 37.16 0.33 -1.72 16 2 C -0.14 -2.21 5.23 -26.73 -0.14 -2.35 16 3 C 0.07 1.39 1.83 -27.88 -0.05 1.34 16 4 H 0.10 1.99 6.82 -51.93 -0.35 1.64 16 5 O -0.36 -6.77 9.69 -54.76 -0.53 -7.30 16 6 C 0.02 0.35 10.34 101.05 1.05 1.40 16 7 C 0.52 11.20 6.97 -10.98 -0.08 11.12 16 8 O -0.54 -13.02 16.11 -13.97 -0.23 -13.25 16 9 N -0.59 -12.09 2.44 -176.43 -0.43 -12.52 16 10 C 0.20 4.32 3.66 -5.19 -0.02 4.30 16 11 C -0.55 -13.86 9.94 -34.44 -0.34 -14.20 16 12 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 13 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.89 -24.97 13.96 55.43 0.77 -24.20 16 15 Si 0.87 19.01 27.47 -169.99 -4.67 14.34 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 19 C 0.20 3.63 6.00 -5.19 -0.03 3.60 16 20 C -0.02 -0.27 6.90 -35.63 -0.25 -0.51 16 21 C -0.20 -3.25 10.81 -39.70 -0.43 -3.68 16 22 C -0.22 -3.00 10.91 -39.70 -0.43 -3.43 16 23 C -0.05 -0.69 12.09 29.42 0.36 -0.34 16 24 O -0.17 -2.94 10.65 5.70 0.06 -2.88 16 25 H 0.06 0.76 6.48 -51.93 -0.34 0.42 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.32 6.27 -51.93 -0.33 0.99 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.58 5.97 -51.93 -0.31 0.27 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.76 7.16 -51.93 -0.37 0.38 16 34 H 0.04 0.74 4.00 -51.93 -0.21 0.53 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.12 2.01 8.07 -51.93 -0.42 1.59 16 37 H 0.09 1.77 7.35 -51.93 -0.38 1.39 16 38 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -31.42 333.44 -5.81 -37.23 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.68 Total: 6.05 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.14 Total: -2.51 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.34 Total: -36.71 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.69 Total: -23.43 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.42 -5.81 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299483363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.567 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds