Wall clock time and date at job start Tue Mar 31 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46960 * 2 1 4 4 H 1.08992 * 109.47789 * 54.57515 * 3 2 1 5 5 O 1.42901 * 109.47081 * 294.57179 * 3 2 1 6 6 C 1.42900 * 114.00035 * 150.00173 * 5 3 2 7 7 C 1.50705 * 109.46952 * 174.57968 * 3 2 1 8 8 O 1.21280 * 120.00308 * 104.33564 * 7 3 2 9 9 N 1.34782 * 119.99817 * 284.33515 * 7 3 2 10 10 C 1.46498 * 119.99636 * 4.38572 * 9 7 3 11 11 C 1.50699 * 109.46841 * 95.88648 * 10 9 7 12 12 H 1.08002 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00157 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00198 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46985 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46780 * 120.00073 * 15 13 11 18 18 H 1.48498 * 109.47193 * 239.99854 * 15 13 11 19 19 C 1.46499 * 119.99864 * 184.38906 * 9 7 3 20 20 C 1.50708 * 109.46995 * 90.00094 * 19 9 7 21 21 C 1.34510 * 125.78819 * 89.99808 * 20 19 9 22 22 C 1.41386 * 106.83794 * 179.97438 * 21 20 19 23 23 C 1.34512 * 106.84216 * 0.02562 * 22 21 20 24 24 O 1.34307 * 108.42201 * 359.73456 * 23 22 21 25 25 H 1.08998 * 109.47011 * 59.99924 * 1 2 3 26 26 H 1.08998 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46760 * 300.00056 * 1 2 3 28 28 H 1.08994 * 109.47156 * 239.99617 * 2 1 3 29 29 H 1.09006 * 109.46980 * 119.99225 * 2 1 3 30 30 H 1.09006 * 109.47365 * 300.00422 * 6 5 3 31 31 H 1.08993 * 109.47422 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47251 * 60.00438 * 6 5 3 33 33 H 1.09000 * 109.46771 * 215.87801 * 10 9 7 34 34 H 1.08998 * 109.47872 * 335.88190 * 10 9 7 35 35 H 0.96995 * 120.00283 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.46985 * 209.99383 * 19 9 7 37 37 H 1.08997 * 109.47332 * 330.00125 * 19 9 7 38 38 H 1.07999 * 126.58082 * 359.96963 * 21 20 19 39 39 H 1.07999 * 126.57853 * 179.97438 * 22 21 20 40 40 H 1.07995 * 125.79235 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9837 0.8373 5 8 1.6705 2.0783 -1.2253 6 6 1.4637 3.4875 -1.1095 7 6 3.5410 1.4446 0.1342 8 8 4.2361 1.6734 -0.8330 9 7 4.1111 1.1923 1.3292 10 6 3.2769 0.8217 2.4750 11 6 3.2370 -0.6793 2.6027 12 1 3.7785 -1.2956 1.9003 13 6 2.5091 -1.2660 3.6162 14 7 1.8501 -0.5155 4.4718 15 14 2.4591 -3.1266 3.7740 16 1 3.2781 -3.7369 2.6961 17 1 3.0048 -3.5260 5.0962 18 1 1.0552 -3.5958 3.6557 19 6 5.5649 1.2887 1.4822 20 6 5.9356 2.6928 1.8851 21 6 6.0368 3.1484 3.1467 22 6 6.4051 4.5108 3.0618 23 6 6.5063 4.8064 1.7535 24 8 6.2262 3.7000 1.0455 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 0.6645 3.6799 -0.3936 31 1 1.1860 3.8951 -2.0815 32 1 2.3822 3.9625 -0.7650 33 1 3.6963 1.2526 3.3842 34 1 2.2658 1.2007 2.3262 35 1 1.3378 -0.9281 5.1846 36 1 5.8964 0.5907 2.2509 37 1 6.0469 1.0431 0.5360 38 1 5.8688 2.5821 4.0509 39 1 6.5722 5.1850 3.8888 40 1 6.7727 5.7688 1.3422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299483365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:39 Heat of formation + Delta-G solvation = -69.088337 kcal Electronic energy + Delta-G solvation = -23246.672716 eV Core-core repulsion = 19835.602428 eV Total energy + Delta-G solvation = -3411.070288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.20453 -39.55845 -37.05730 -35.23119 -33.18943 -32.65802 -32.54463 -30.38222 -27.56212 -27.40200 -26.13099 -24.64640 -22.98557 -21.37449 -21.35266 -20.26798 -18.73855 -17.24518 -16.83223 -16.50344 -16.17333 -15.82053 -15.06903 -14.77326 -14.61608 -14.42539 -14.01407 -13.46663 -13.20949 -12.90808 -12.55639 -12.49945 -12.43567 -12.30444 -11.97404 -11.66825 -11.37125 -11.35157 -11.11960 -10.95502 -10.85081 -10.46999 -10.20998 -10.09931 -9.99455 -9.83853 -9.60609 -8.79103 -8.59962 -8.15044 -7.90085 -6.28542 -4.35448 2.00016 2.87932 3.16507 3.17201 3.26513 3.30094 3.47523 3.80613 4.23396 4.33789 5.02748 5.04917 5.19974 5.32760 5.36475 5.42985 5.54661 5.61630 5.71584 5.77707 5.89393 5.93435 6.05433 6.09045 6.12051 6.26393 6.33127 6.40373 6.55878 6.61410 6.70390 6.81287 7.02854 7.13436 7.33137 7.49251 7.51143 7.65970 7.93282 8.21046 8.68946 8.92148 9.31351 10.77672 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.007601 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.232908 B = 3682.785666 C = 5275.975307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.085 3.915 4 H 0.083 0.917 5 O -0.364 6.364 6 C 0.031 3.969 7 C 0.495 3.505 8 O -0.550 6.550 9 N -0.592 5.592 10 C 0.233 3.767 11 C -0.540 4.540 12 H 0.066 0.934 13 C 0.069 3.931 14 N -0.884 5.884 15 Si 0.893 3.107 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.194 3.806 20 C -0.015 4.015 21 C -0.202 4.202 22 C -0.216 4.216 23 C -0.054 4.054 24 O -0.169 6.169 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.131 0.869 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 6.842 -2.873 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.024 3.976 4 H 0.100 0.900 5 O -0.281 6.281 6 C -0.065 4.065 7 C 0.283 3.717 8 O -0.429 6.429 9 N -0.325 5.325 10 C 0.114 3.886 11 C -0.578 4.578 12 H 0.084 0.916 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.721 3.279 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.071 3.929 20 C -0.067 4.067 21 C -0.222 4.222 22 C -0.235 4.235 23 C -0.122 4.122 24 O -0.064 6.064 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.321 6.816 -3.713 8.101 hybrid contribution -0.053 -0.506 0.901 1.035 sum 2.268 6.309 -2.812 7.270 Atomic orbital electron populations 1.21633 0.95527 1.01351 1.01262 1.22012 0.96474 0.92741 1.06022 1.22108 0.90997 0.97008 0.87493 0.89972 1.87946 1.88474 1.20042 1.31639 1.22756 0.99400 0.82436 1.01952 1.21323 0.91389 0.76316 0.82701 1.90612 1.64462 1.49809 1.37976 1.48337 1.05976 1.66499 1.11673 1.19574 0.90220 0.95886 0.82952 1.21466 1.31438 0.91302 1.13644 0.91552 1.24936 0.94876 0.98558 0.95119 1.69925 1.30741 1.35440 1.16071 0.86500 0.78158 0.85023 0.78267 1.19446 1.20816 1.20657 1.19686 0.82922 0.86702 1.03623 1.23279 1.03404 0.91486 0.88503 1.21682 1.07353 0.95512 0.97676 1.21793 1.07994 0.96863 0.96859 1.23957 1.06373 0.90745 0.91145 1.84108 1.66789 1.17898 1.37616 0.93117 0.92814 0.92812 0.91883 0.85155 0.94244 0.89880 0.94337 0.94505 0.94058 0.92404 0.86827 0.89236 0.83278 0.83863 0.78732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.81 37.16 0.36 -1.96 16 2 C -0.14 -2.59 5.40 -26.73 -0.14 -2.74 16 3 C 0.08 1.66 1.68 -27.88 -0.05 1.62 16 4 H 0.08 1.57 6.37 -51.93 -0.33 1.24 16 5 O -0.36 -6.94 9.48 -54.64 -0.52 -7.46 16 6 C 0.03 0.48 10.81 101.05 1.09 1.57 16 7 C 0.50 10.77 6.94 -10.98 -0.08 10.69 16 8 O -0.55 -13.27 16.13 -13.85 -0.22 -13.49 16 9 N -0.59 -12.38 2.44 -176.43 -0.43 -12.81 16 10 C 0.23 5.23 4.68 -5.20 -0.02 5.20 16 11 C -0.54 -12.93 6.85 -34.44 -0.24 -13.17 16 12 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.88 -22.83 13.29 55.43 0.74 -22.09 16 15 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.19 3.66 5.99 -5.19 -0.03 3.63 16 20 C -0.01 -0.27 6.90 -35.62 -0.25 -0.52 16 21 C -0.20 -3.38 10.81 -39.70 -0.43 -3.81 16 22 C -0.22 -3.13 10.91 -39.70 -0.43 -3.56 16 23 C -0.05 -0.77 12.09 29.42 0.36 -0.42 16 24 O -0.17 -3.07 10.65 5.69 0.06 -3.01 16 25 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.13 2.78 4.49 -51.93 -0.23 2.54 16 30 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.04 0.96 5.65 -51.93 -0.29 0.67 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.11 1.98 8.07 -51.93 -0.42 1.56 16 37 H 0.09 1.70 7.37 -51.93 -0.38 1.32 16 38 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.20 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -29.10 338.16 -6.09 -35.19 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.83 Total: 6.04 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 0.05 Total: -1.85 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.31 Total: -34.90 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.68 Total: -23.96 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.10 -6.09 -35.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299483365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.897 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds