Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46725 * 2 1 4 4 H 1.08999 * 109.47780 * 303.20993 * 3 2 1 5 5 C 1.50701 * 109.46964 * 183.20910 * 3 2 1 6 6 H 1.08006 * 120.00282 * 240.00309 * 5 3 2 7 7 C 1.37876 * 119.99783 * 60.00502 * 5 3 2 8 8 N 1.31514 * 120.00260 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46987 * 90.00226 * 9 7 5 11 11 H 1.48498 * 109.46694 * 209.99944 * 9 7 5 12 12 H 1.48500 * 109.47179 * 329.99674 * 9 7 5 13 13 N 1.46898 * 109.46806 * 63.21428 * 3 2 1 14 14 C 1.46853 * 111.00013 * 190.99899 * 13 3 2 15 15 C 1.53037 * 109.52445 * 174.16139 * 14 13 3 16 16 C 1.53119 * 109.27884 * 59.17878 * 15 14 13 17 17 O 1.42898 * 109.52384 * 62.25338 * 16 15 14 18 18 C 1.53006 * 109.52179 * 182.44314 * 16 15 14 19 19 F 1.39898 * 109.46961 * 179.68179 * 18 16 15 20 20 F 1.39901 * 109.46969 * 299.68232 * 18 16 15 21 21 F 1.39896 * 109.47272 * 59.68173 * 18 16 15 22 22 C 1.53115 * 109.15933 * 302.34344 * 16 15 14 23 23 C 1.46847 * 111.00246 * 66.79119 * 13 3 2 24 24 H 1.08996 * 109.47677 * 64.77553 * 1 2 3 25 25 H 1.09003 * 109.47080 * 184.77147 * 1 2 3 26 26 H 1.08997 * 109.47153 * 304.77004 * 1 2 3 27 27 H 1.09002 * 109.47090 * 240.00595 * 2 1 3 28 28 H 1.08992 * 109.47314 * 120.00525 * 2 1 3 29 29 H 0.96998 * 120.00316 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.45875 * 294.17375 * 14 13 3 31 31 H 1.08997 * 109.46321 * 54.13777 * 14 13 3 32 32 H 1.09001 * 109.49964 * 299.23723 * 15 14 13 33 33 H 1.08999 * 109.53627 * 179.13836 * 15 14 13 34 34 H 0.96697 * 114.00051 * 60.31651 * 17 16 15 35 35 H 1.09002 * 109.50678 * 297.71551 * 22 16 15 36 36 H 1.09008 * 109.53618 * 177.61527 * 22 16 15 37 37 H 1.09000 * 109.45797 * 305.85380 * 23 13 3 38 38 H 1.09004 * 109.46429 * 65.83196 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6303 1.9728 -0.8598 5 6 3.5448 1.4433 -0.0795 6 1 4.1271 1.8960 0.7095 7 6 4.1783 0.8661 -1.1596 8 7 3.4693 0.3153 -2.1206 9 14 6.0438 0.8678 -1.2585 10 1 6.5750 -0.3571 -0.6084 11 1 6.4638 0.8941 -2.6826 12 1 6.5753 2.0675 -0.5634 13 7 1.6146 2.1121 1.2364 14 6 1.8555 3.5588 1.1610 15 6 1.2700 4.2400 2.4001 16 6 1.9277 3.6588 3.6548 17 8 3.3298 3.9336 3.6299 18 6 1.3032 4.2924 4.8996 19 9 1.8998 3.7554 6.0454 20 9 1.5087 5.6760 4.8716 21 9 -0.0699 4.0252 4.9199 22 6 1.7034 2.1445 3.6842 23 6 2.2764 1.5240 2.4079 24 1 -0.3634 0.4379 -0.9296 25 1 -0.3633 -1.0241 0.0855 26 1 -0.3633 0.5860 0.8441 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9150 -0.0910 -2.8803 30 1 2.9284 3.7464 1.1163 31 1 1.3792 3.9602 0.2666 32 1 0.1950 4.0643 2.4381 33 1 1.4622 5.3118 2.3518 34 1 3.5457 4.8760 3.6105 35 1 0.6352 1.9358 3.7424 36 1 2.2054 1.7184 4.5530 37 1 2.1056 0.4475 2.4191 38 1 3.3472 1.7213 2.3573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310110150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -207.949670 kcal Electronic energy + Delta-G solvation = -24290.939708 eV Core-core repulsion = 20331.991200 eV Total energy + Delta-G solvation = -3958.948508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.13656 -47.66406 -47.57782 -39.30980 -36.56769 -33.70157 -31.77987 -30.87652 -30.32176 -27.30758 -25.62269 -23.19850 -23.02184 -21.92586 -20.02625 -19.09852 -18.40173 -18.28942 -18.25351 -16.56199 -15.80444 -15.26035 -14.77367 -14.46610 -14.39129 -14.11850 -14.01361 -13.85367 -13.76881 -13.75346 -13.70964 -13.23380 -12.90083 -12.61205 -11.93237 -11.90024 -11.63291 -11.56988 -11.15206 -10.93343 -10.83463 -10.77199 -10.55980 -10.34533 -10.03042 -9.80260 -9.66195 -9.38306 -9.08280 -8.37613 -7.16449 -6.00281 -4.13140 2.68106 3.26472 3.33970 3.37255 3.70638 3.73187 3.97458 4.37568 4.39360 4.78074 4.81248 5.01824 5.24523 5.53699 5.68041 5.79902 5.88550 5.98024 6.01722 6.27042 6.41509 6.46468 6.53875 6.66890 6.70281 6.86226 7.10173 7.16565 7.33206 7.36805 7.58460 7.75887 7.93660 8.13130 8.27491 8.44222 8.96893 9.54779 10.99285 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.005748 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.260553 B = 4870.228592 C = 5499.281316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.535 5.535 14 C 0.071 3.929 15 C -0.143 4.143 16 C 0.105 3.895 17 O -0.522 6.522 18 C 0.420 3.580 19 F -0.180 7.180 20 F -0.189 7.189 21 F -0.179 7.179 22 C -0.107 4.107 23 C 0.068 3.932 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.379 0.621 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 6.901 10.746 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.259 5.259 14 C -0.058 4.058 15 C -0.181 4.181 16 C 0.062 3.938 17 O -0.327 6.327 18 C 0.366 3.634 19 F -0.161 7.161 20 F -0.170 7.170 21 F -0.160 7.160 22 C -0.145 4.145 23 C -0.060 4.060 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.189 6.099 10.645 13.321 hybrid contribution 1.786 0.925 0.117 2.015 sum -3.403 7.025 10.763 13.295 Atomic orbital electron populations 1.21727 0.98861 0.98539 1.00589 1.21595 0.92206 0.99108 1.01985 1.19253 0.92913 0.91113 0.85797 0.94376 1.21773 0.92677 1.37627 1.06179 0.92223 1.24903 0.97873 0.95050 0.95557 1.69871 1.34939 1.37875 1.09760 0.86686 0.86293 0.78444 0.77123 1.20711 1.21283 1.20038 1.62449 1.57197 1.01593 1.04710 1.21710 0.99344 0.90102 0.94622 1.22369 1.01899 0.99595 0.94285 1.22541 0.83056 0.98888 0.89356 1.86754 1.19633 1.30261 1.96072 1.21922 0.77203 0.76589 0.87719 1.93173 1.83503 1.85783 1.53674 1.93141 1.94699 1.32396 1.96811 1.93166 1.32459 1.93574 1.96824 1.21795 1.02877 0.88756 1.01068 1.21799 0.97651 0.98755 0.87786 0.94364 0.95635 0.93077 0.89003 0.94871 0.92911 0.93513 0.91080 0.89484 0.91017 0.77254 0.89349 0.90628 0.90462 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.85 37.16 0.37 -2.37 16 2 C -0.11 -2.52 5.14 -26.73 -0.14 -2.65 16 3 C 0.22 5.03 1.72 -68.87 -0.12 4.92 16 4 H 0.04 1.00 7.97 -51.93 -0.41 0.58 16 5 C -0.54 -14.00 7.24 -34.44 -0.25 -14.25 16 6 H 0.06 1.57 5.84 -52.48 -0.31 1.26 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -24.34 11.30 55.43 0.63 -23.71 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.54 -10.46 3.89 -228.07 -0.89 -11.35 16 14 C 0.07 1.25 5.06 -3.83 -0.02 1.23 16 15 C -0.14 -2.00 4.83 -26.65 -0.13 -2.12 16 16 C 0.10 1.47 0.49 -90.50 -0.04 1.42 16 17 O -0.52 -7.45 11.79 -35.23 -0.42 -7.87 16 18 C 0.42 5.54 2.38 37.16 0.09 5.63 16 19 F -0.18 -2.51 16.80 2.25 0.04 -2.47 16 20 F -0.19 -2.36 16.48 2.25 0.04 -2.32 16 21 F -0.18 -2.40 16.20 2.25 0.04 -2.36 16 22 C -0.11 -1.63 4.86 -26.65 -0.13 -1.75 16 23 C 0.07 1.27 4.64 -3.83 -0.02 1.25 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 27 H 0.09 2.36 5.99 -51.93 -0.31 2.05 16 28 H 0.03 0.74 6.33 -51.93 -0.33 0.41 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.05 0.91 6.98 -51.93 -0.36 0.55 16 31 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 32 H 0.09 1.20 7.73 -51.93 -0.40 0.79 16 33 H 0.07 0.85 7.89 -51.93 -0.41 0.44 16 34 H 0.38 3.98 8.69 45.56 0.40 4.37 16 35 H 0.09 1.27 7.74 -51.93 -0.40 0.87 16 36 H 0.08 1.09 7.88 -51.92 -0.41 0.68 16 37 H 0.08 1.48 6.20 -51.93 -0.32 1.16 16 38 H 0.05 1.12 5.94 -51.93 -0.31 0.81 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -27.11 304.18 -5.86 -32.97 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.37 Total: 3.67 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.49 Total: -6.96 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.26 Total: -35.06 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.42 Total: -7.87 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.11 -5.86 -32.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310110150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.984 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds