Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47678 * 2 1 4 4 H 1.08998 * 109.47135 * 303.20559 * 3 2 1 5 5 C 1.50698 * 109.47386 * 183.20056 * 3 2 1 6 6 H 1.08001 * 120.00275 * 245.45083 * 5 3 2 7 7 C 1.37879 * 120.00035 * 65.45529 * 5 3 2 8 8 N 1.31515 * 119.99718 * 196.10719 * 7 5 3 9 9 Si 1.86794 * 119.99882 * 16.10076 * 7 5 3 10 10 H 1.48499 * 109.47052 * 87.69252 * 9 7 5 11 11 H 1.48503 * 109.47339 * 207.69134 * 9 7 5 12 12 H 1.48505 * 109.47544 * 327.69312 * 9 7 5 13 13 N 1.46898 * 109.46937 * 63.19997 * 3 2 1 14 14 C 1.46897 * 111.00221 * 261.83617 * 13 3 2 15 15 H 1.08998 * 109.54356 * 26.90690 * 14 13 3 16 16 C 1.53183 * 109.61764 * 266.68973 * 14 13 3 17 17 C 1.53090 * 109.16122 * 183.10974 * 16 14 13 18 18 O 1.42899 * 109.41907 * 57.60659 * 17 16 14 19 19 C 1.42902 * 114.09540 * 298.84218 * 18 17 16 20 20 H 1.09000 * 109.48036 * 301.17045 * 19 18 17 21 21 C 1.53006 * 109.47767 * 181.14344 * 19 18 17 22 22 F 1.39897 * 109.47342 * 59.99737 * 21 19 18 23 23 F 1.39891 * 109.46919 * 180.02562 * 21 19 18 24 24 F 1.39905 * 109.46710 * 299.99908 * 21 19 18 25 25 C 1.53088 * 109.41483 * 61.15967 * 19 18 17 26 26 H 1.08997 * 109.47495 * 177.94020 * 1 2 3 27 27 H 1.08996 * 109.47483 * 297.94837 * 1 2 3 28 28 H 1.09003 * 109.46675 * 57.94119 * 1 2 3 29 29 H 1.08999 * 109.47455 * 239.99635 * 2 1 3 30 30 H 1.09001 * 109.46913 * 120.00043 * 2 1 3 31 31 H 0.97004 * 119.99388 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00169 * 137.88517 * 13 3 2 33 33 H 1.08998 * 109.51796 * 303.00834 * 16 14 13 34 34 H 1.08999 * 109.52127 * 63.20171 * 16 14 13 35 35 H 1.09002 * 109.47737 * 297.61733 * 17 16 14 36 36 H 1.09004 * 109.47757 * 177.59448 * 17 16 14 37 37 H 1.08990 * 109.52390 * 62.29869 * 25 19 18 38 38 H 1.09005 * 109.51679 * 182.42111 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6306 1.9726 -0.8598 5 6 3.5450 1.4431 -0.0793 6 1 4.1293 1.8160 0.7489 7 6 4.1760 0.9677 -1.2093 8 7 5.4563 0.6695 -1.1712 9 14 3.2123 0.7469 -2.7942 10 1 3.2264 2.0172 -3.5631 11 1 3.8342 -0.3300 -3.6059 12 1 1.8099 0.3780 -2.4736 13 7 1.6146 2.1122 1.2362 14 6 0.4086 2.9196 1.0093 15 1 -0.1607 2.4996 0.1801 16 6 0.8092 4.3605 0.6779 17 6 -0.4548 5.2098 0.5200 18 8 -1.2263 5.1412 1.7208 19 6 -1.6690 3.8243 2.0554 20 1 -2.2758 3.4271 1.2417 21 6 -2.5044 3.8769 3.3363 22 9 -3.6140 4.7050 3.1357 23 9 -2.9372 2.5877 3.6640 24 9 -1.7250 4.3863 4.3806 25 6 -0.4539 2.9194 2.2751 26 1 -0.3634 -1.0269 -0.0369 27 1 -0.3634 0.4816 0.9077 28 1 -0.3633 0.5455 -0.8710 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 5.9003 0.3354 -1.9663 32 1 2.3601 2.6752 1.6175 33 1 1.4202 4.7635 1.4855 34 1 1.3770 4.3759 -0.2524 35 1 -1.0455 4.8307 -0.3139 36 1 -0.1750 6.2453 0.3263 37 1 0.1316 3.2933 3.1150 38 1 -0.7895 1.9044 2.4882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310114515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = -207.944902 kcal Electronic energy + Delta-G solvation = -23690.912478 eV Core-core repulsion = 19731.964177 eV Total energy + Delta-G solvation = -3958.948301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.17139 -47.71071 -47.62186 -39.71291 -36.75552 -33.58316 -32.16902 -31.94190 -29.96217 -27.47900 -26.10228 -23.58687 -22.79476 -22.26792 -20.49032 -19.71470 -18.62108 -18.37445 -18.00630 -16.88181 -16.19059 -15.65935 -15.47777 -14.61104 -14.51700 -14.45060 -14.27817 -14.08054 -13.96776 -13.79624 -13.78389 -13.39533 -13.28744 -12.83744 -12.59222 -12.17312 -12.01295 -11.79471 -11.48696 -11.43488 -11.02928 -10.92138 -10.84565 -10.46890 -10.18312 -9.95049 -9.86533 -9.43283 -9.20971 -8.51673 -7.59623 -6.21572 -4.17205 2.40280 3.19374 3.24628 3.29763 3.31330 3.68456 3.89915 4.32032 4.40539 4.61936 4.75669 4.84421 4.90296 5.08908 5.13530 5.28783 5.37953 5.60597 5.68876 5.85139 5.91995 5.98030 6.04027 6.18010 6.22290 6.31547 6.58276 6.68041 6.77165 6.93524 6.98578 7.36109 7.56453 7.86168 8.23769 8.50718 8.87289 9.44240 10.91301 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.004721 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.744178 B = 5929.341400 C = 6176.222104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.194 3.806 4 H 0.002 0.998 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.252 1.252 13 N -0.672 5.672 14 C 0.090 3.910 15 H 0.077 0.923 16 C -0.187 4.187 17 C 0.069 3.931 18 O -0.368 6.368 19 C 0.049 3.951 20 H 0.099 0.901 21 C 0.465 3.535 22 F -0.180 7.180 23 F -0.175 7.175 24 F -0.174 7.174 25 C -0.141 4.141 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.265 0.735 32 H 0.344 0.656 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.441 6.640 4.440 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.085 3.915 4 H 0.020 0.980 5 C -0.573 4.573 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.689 3.311 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.176 1.176 13 N -0.302 5.302 14 C -0.021 4.021 15 H 0.095 0.905 16 C -0.226 4.226 17 C -0.008 4.008 18 O -0.287 6.287 19 C -0.011 4.011 20 H 0.117 0.883 21 C 0.411 3.589 22 F -0.162 7.162 23 F -0.156 7.156 24 F -0.156 7.156 25 C -0.180 4.180 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.656 6.157 4.709 17.470 hybrid contribution -0.010 0.379 -1.452 1.501 sum -15.666 6.537 3.257 17.284 Atomic orbital electron populations 1.21903 0.98751 0.99680 1.00451 1.21875 0.92619 0.99396 1.01056 1.19470 0.95314 0.90632 0.86065 0.97992 1.21167 0.89084 1.43621 1.03396 0.90581 1.24887 0.94700 0.93965 0.98818 1.69987 1.10643 1.42514 1.29246 0.87225 0.81813 0.78020 0.84070 1.20673 1.21325 1.17611 1.60534 1.06439 1.32366 1.30835 1.21603 0.94059 0.91155 0.95332 0.90536 1.23020 0.98296 0.97316 1.03973 1.22687 0.91351 1.01509 0.85245 1.87893 1.71626 1.24438 1.44737 1.23160 0.96988 0.87528 0.93415 0.88349 1.20200 0.78843 0.73501 0.86384 1.93189 1.55287 1.72621 1.95078 1.93200 1.90340 1.38609 1.93498 1.93199 1.74403 1.87142 1.60817 1.22299 0.94781 0.99720 1.01172 0.94523 0.92550 0.94564 0.93064 0.92140 0.92555 0.83693 0.90419 0.89828 0.92676 0.88019 0.89625 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.65 37.15 0.32 -2.25 16 2 C -0.11 -2.32 4.98 -26.74 -0.13 -2.45 16 3 C 0.19 4.19 1.71 -68.87 -0.12 4.08 16 4 H 0.00 0.05 6.14 -51.93 -0.32 -0.26 16 5 C -0.53 -14.02 8.99 -34.44 -0.31 -14.33 16 6 H 0.08 2.17 7.73 -52.49 -0.41 1.77 16 7 C 0.08 2.18 5.33 -17.82 -0.10 2.09 16 8 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 9 Si 0.86 20.24 25.86 -169.99 -4.40 15.84 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.25 -5.56 5.53 56.52 0.31 -5.25 16 13 N -0.67 -12.29 5.87 -100.77 -0.59 -12.88 16 14 C 0.09 1.33 1.38 -67.53 -0.09 1.23 16 15 H 0.08 1.15 6.03 -51.93 -0.31 0.84 16 16 C -0.19 -2.50 5.44 -26.59 -0.14 -2.64 16 17 C 0.07 0.77 6.84 37.20 0.25 1.03 16 18 O -0.37 -4.67 10.29 -35.23 -0.36 -5.04 16 19 C 0.05 0.58 2.62 -26.68 -0.07 0.51 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.47 5.67 2.85 37.16 0.11 5.78 16 22 F -0.18 -2.25 17.26 2.25 0.04 -2.21 16 23 F -0.18 -2.10 16.85 2.25 0.04 -2.06 16 24 F -0.17 -2.32 16.70 2.25 0.04 -2.28 16 25 C -0.14 -1.85 4.71 -26.59 -0.13 -1.97 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.90 5.89 -51.93 -0.31 0.59 16 28 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 29 H 0.05 1.14 5.02 -51.93 -0.26 0.88 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.34 6.48 7.56 -39.29 -0.30 6.18 16 33 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.17 7.74 -51.93 -0.40 0.77 16 38 H 0.09 1.18 7.08 -51.93 -0.37 0.81 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -28.07 306.36 -5.51 -33.58 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.26 Total: 4.64 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.41 Total: -8.94 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.18 Total: -38.15 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.36 Total: -5.04 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.56 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.40 Total: 15.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.07 -5.51 -33.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310114515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.365 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds