Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 H 1.09000 * 109.47625 * 304.04969 * 3 2 1 5 5 C 1.50701 * 109.47086 * 184.04848 * 3 2 1 6 6 H 1.08000 * 120.00319 * 240.00196 * 5 3 2 7 7 C 1.37884 * 119.99721 * 60.00486 * 5 3 2 8 8 N 1.31513 * 119.99752 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99674 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47689 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47302 * 120.00006 * 9 7 5 12 12 H 1.48499 * 109.47003 * 239.99557 * 9 7 5 13 13 N 1.46902 * 109.46897 * 64.05533 * 3 2 1 14 14 C 1.46905 * 110.99841 * 204.02196 * 13 3 2 15 15 H 1.09003 * 109.54287 * 325.33293 * 14 13 3 16 16 C 1.53178 * 109.54470 * 85.50704 * 14 13 3 17 17 C 1.53105 * 109.15902 * 176.76145 * 16 14 13 18 18 O 1.42901 * 109.48334 * 302.52704 * 17 16 14 19 19 C 1.42895 * 114.10140 * 61.10841 * 18 17 16 20 20 H 1.09005 * 109.47855 * 58.82582 * 19 18 17 21 21 C 1.52997 * 109.49084 * 178.85107 * 19 18 17 22 22 F 1.39908 * 109.47174 * 179.97438 * 21 19 18 23 23 F 1.39897 * 109.47550 * 299.95149 * 21 19 18 24 24 F 1.39902 * 109.47132 * 59.95117 * 21 19 18 25 25 C 1.53091 * 109.41764 * 298.84650 * 19 18 17 26 26 H 1.08999 * 109.47064 * 174.92008 * 1 2 3 27 27 H 1.08996 * 109.47423 * 294.92730 * 1 2 3 28 28 H 1.09006 * 109.46962 * 54.92337 * 1 2 3 29 29 H 1.08996 * 109.47300 * 240.00520 * 2 1 3 30 30 H 1.09000 * 109.46932 * 119.99929 * 2 1 3 31 31 H 0.97006 * 119.99593 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00442 * 80.07038 * 13 3 2 33 33 H 1.09001 * 109.52237 * 296.75418 * 16 14 13 34 34 H 1.08996 * 109.52347 * 56.93668 * 16 14 13 35 35 H 1.08994 * 109.48116 * 182.49601 * 17 16 14 36 36 H 1.08996 * 109.41431 * 62.51010 * 17 16 14 37 37 H 1.09007 * 109.51997 * 297.69677 * 25 19 18 38 38 H 1.09003 * 109.52282 * 177.51769 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6186 1.9770 -0.8514 5 6 3.5436 1.4438 -0.1003 6 1 4.1367 1.8926 0.6827 7 6 4.1622 0.8718 -1.1919 8 7 3.4399 0.3249 -2.1451 9 14 6.0260 0.8727 -1.3159 10 1 6.6012 1.5444 -0.1230 11 1 6.5184 -0.5268 -1.3821 12 1 6.4402 1.6016 -2.5416 13 7 1.6318 2.1061 1.2454 14 6 1.5781 3.5639 1.0720 15 1 2.3643 3.8787 0.3857 16 6 0.2124 3.9625 0.5042 17 6 0.1362 5.4883 0.4030 18 8 0.3601 6.0632 1.6919 19 6 1.6409 5.7634 2.2501 20 1 2.4224 6.1225 1.5804 21 6 1.7788 6.4509 3.6099 22 9 3.0327 6.1566 4.1563 23 9 1.6546 7.8349 3.4476 24 9 0.7754 5.9903 4.4692 25 6 1.7769 4.2489 2.4275 26 1 -0.3633 -1.0236 -0.0910 27 1 -0.3634 0.4331 0.9319 28 1 -0.3633 0.5906 -0.8411 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8751 -0.0778 -2.9129 32 1 2.2446 1.8549 2.0067 33 1 0.0874 3.5237 -0.4857 34 1 -0.5760 3.6026 1.1653 35 1 -0.8498 5.7797 0.0412 36 1 0.8978 5.8438 -0.2909 37 1 1.0210 3.8950 3.1288 38 1 2.7696 4.0148 2.8120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310114516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = -215.607844 kcal Electronic energy + Delta-G solvation = -23541.372484 eV Core-core repulsion = 19582.091893 eV Total energy + Delta-G solvation = -3959.280591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.11093 -47.64750 -47.56471 -39.50684 -36.39079 -33.59168 -32.03980 -31.57645 -29.78223 -26.92096 -25.79187 -23.64371 -22.98060 -22.08089 -20.02673 -19.52792 -18.54654 -18.25407 -17.85660 -16.67559 -16.03070 -15.51866 -15.02481 -14.64065 -14.55403 -14.41521 -14.24057 -14.02624 -13.88292 -13.73706 -13.70302 -13.43005 -12.89642 -12.82949 -12.02985 -12.00695 -11.56936 -11.44870 -11.31870 -11.22282 -10.91950 -10.79638 -10.46436 -10.35538 -10.17421 -9.83171 -9.64103 -9.47880 -9.10099 -8.45541 -7.40214 -6.08101 -4.21510 2.48273 3.19924 3.29295 3.31746 3.33351 3.76778 3.97368 4.32343 4.48863 4.72145 4.87921 4.97946 5.14337 5.18937 5.25168 5.46982 5.54775 5.87749 5.91185 5.99873 6.16813 6.34919 6.40105 6.45026 6.65868 6.66232 6.90686 7.04402 7.11557 7.36288 7.51298 7.69801 7.99451 8.05336 8.23242 8.54676 8.90856 9.46904 10.91977 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.005151 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.832226 B = 5434.464840 C = 6172.366271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.682 5.682 14 C 0.097 3.903 15 H 0.053 0.947 16 C -0.144 4.144 17 C 0.065 3.935 18 O -0.369 6.369 19 C 0.054 3.946 20 H 0.100 0.900 21 C 0.464 3.536 22 F -0.176 7.176 23 F -0.180 7.180 24 F -0.175 7.175 25 C -0.154 4.154 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 9.905 6.952 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.014 4.014 15 H 0.071 0.929 16 C -0.182 4.182 17 C -0.011 4.011 18 O -0.288 6.288 19 C -0.007 4.007 20 H 0.118 0.882 21 C 0.410 3.590 22 F -0.157 7.157 23 F -0.162 7.162 24 F -0.156 7.156 25 C -0.192 4.192 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.522 9.834 6.774 13.156 hybrid contribution 2.309 0.094 -0.146 2.316 sum -3.213 9.928 6.628 12.361 Atomic orbital electron populations 1.21688 0.98926 0.98324 1.00361 1.21499 0.92131 0.99160 1.01749 1.19203 0.92624 0.91169 0.86232 0.94843 1.21900 0.92688 1.38195 1.05945 0.92833 1.24928 0.97990 0.94899 0.95622 1.69883 1.34871 1.37814 1.09584 0.86618 0.86041 0.77853 0.77954 1.19907 1.20884 1.21029 1.60957 1.56691 1.03886 1.09596 1.21252 0.96090 0.90751 0.93262 0.92878 1.22246 0.98872 0.94082 1.03010 1.22776 1.02010 0.93696 0.82651 1.87870 1.31594 1.74035 1.35293 1.23079 0.90111 0.96768 0.90694 0.88198 1.20241 0.73734 0.77099 0.87913 1.93201 1.42059 1.93181 1.87296 1.93186 1.95605 1.31669 1.95691 1.93191 1.61060 1.88463 1.72914 1.22451 1.04121 0.91564 1.01079 0.95677 0.93430 0.94490 0.89162 0.95070 0.92862 0.85275 0.90196 0.90584 0.88040 0.92656 0.89290 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.73 37.16 0.36 -2.30 16 2 C -0.11 -2.44 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 4.96 1.81 -68.86 -0.12 4.84 16 4 H 0.03 0.85 7.19 -51.93 -0.37 0.48 16 5 C -0.55 -13.99 8.22 -34.44 -0.28 -14.27 16 6 H 0.05 1.36 7.76 -52.49 -0.41 0.96 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -24.05 11.30 55.43 0.63 -23.43 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.07 5.56 -100.76 -0.56 -13.63 16 14 C 0.10 1.62 2.38 -67.53 -0.16 1.46 16 15 H 0.05 1.00 7.60 -51.93 -0.39 0.60 16 16 C -0.14 -2.14 5.62 -26.59 -0.15 -2.29 16 17 C 0.06 0.81 6.84 37.21 0.25 1.07 16 18 O -0.37 -5.10 10.30 -35.23 -0.36 -5.46 16 19 C 0.05 0.71 2.62 -26.69 -0.07 0.64 16 20 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 21 C 0.46 6.08 2.85 37.16 0.11 6.19 16 22 F -0.18 -2.28 16.85 2.25 0.04 -2.24 16 23 F -0.18 -2.40 17.26 2.25 0.04 -2.37 16 24 F -0.17 -2.43 16.70 2.25 0.04 -2.39 16 25 C -0.15 -2.19 4.44 -26.60 -0.12 -2.31 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.33 6.33 8.08 -39.29 -0.32 6.01 16 33 H 0.08 1.28 7.50 -51.93 -0.39 0.89 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.28 7.74 -51.92 -0.40 0.88 16 38 H 0.08 1.15 7.88 -51.93 -0.41 0.75 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -26.46 316.96 -6.36 -32.82 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.51 Total: 4.37 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.42 Total: -7.87 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.07 Total: -37.06 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.00 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.46 -6.36 -32.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310114516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.792 kcal (2) G-P(sol) polarization free energy of solvation -26.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds