Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46961 * 2 1 4 4 H 1.09000 * 109.46981 * 177.51544 * 3 2 1 5 5 C 1.50705 * 109.47215 * 57.51995 * 3 2 1 6 6 H 1.08001 * 119.99518 * 239.99856 * 5 3 2 7 7 C 1.37877 * 120.00147 * 59.99660 * 5 3 2 8 8 N 1.31513 * 120.00099 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99854 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47325 * 59.99792 * 9 7 5 11 11 H 1.48503 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47131 * 299.99935 * 9 7 5 13 13 N 1.46895 * 109.47621 * 297.51516 * 3 2 1 14 14 C 1.46898 * 111.00204 * 274.29410 * 13 3 2 15 15 H 1.08998 * 109.54271 * 35.07121 * 14 13 3 16 16 C 1.53180 * 109.54056 * 274.89879 * 14 13 3 17 17 C 1.53101 * 109.16212 * 297.11107 * 16 14 13 18 18 O 1.42902 * 109.41001 * 302.39256 * 17 16 14 19 19 C 1.42900 * 114.09965 * 61.16257 * 18 17 16 20 20 H 1.09002 * 109.48389 * 58.83004 * 19 18 17 21 21 C 1.53006 * 109.47896 * 178.85592 * 19 18 17 22 22 F 1.39897 * 109.47186 * 59.99896 * 21 19 18 23 23 F 1.39900 * 109.46942 * 179.97438 * 21 19 18 24 24 F 1.39903 * 109.47056 * 299.99365 * 21 19 18 25 25 C 1.53091 * 109.41358 * 298.83292 * 19 18 17 26 26 H 1.09000 * 109.47266 * 174.52339 * 1 2 3 27 27 H 1.09009 * 109.46797 * 294.51505 * 1 2 3 28 28 H 1.08994 * 109.47532 * 54.51718 * 1 2 3 29 29 H 1.08995 * 109.47179 * 120.00101 * 2 1 3 30 30 H 1.09003 * 109.46694 * 240.00299 * 2 1 3 31 31 H 0.96999 * 120.00059 * 179.97438 * 8 7 5 32 32 H 1.00903 * 111.00391 * 150.33250 * 13 3 2 33 33 H 1.08994 * 109.52437 * 57.01580 * 16 14 13 34 34 H 1.09003 * 109.51948 * 177.20803 * 16 14 13 35 35 H 1.08994 * 109.47558 * 62.37254 * 17 16 14 36 36 H 1.08995 * 109.47516 * 182.39933 * 17 16 14 37 37 H 1.09000 * 109.52586 * 297.70749 * 25 19 18 38 38 H 1.09000 * 109.52429 * 177.51319 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0445 5 6 1.4880 2.1704 1.1986 6 1 0.8720 3.0468 1.0615 7 6 1.7696 1.7176 2.4701 8 7 2.5202 0.6507 2.6370 9 14 1.0848 2.6195 3.9557 10 1 -0.3990 2.6186 3.8948 11 1 1.5292 1.9369 5.1974 12 1 1.5793 4.0198 3.9559 13 7 1.6000 2.1175 -1.2282 14 6 2.5386 1.8691 -2.3306 15 1 2.9402 0.8593 -2.2471 16 6 3.6848 2.8833 -2.2658 17 6 3.1202 4.2930 -2.4605 18 8 2.4289 4.3594 -3.7094 19 6 1.3176 3.4666 -3.8094 20 1 0.6026 3.6858 -3.0163 21 6 0.6409 3.6446 -5.1701 22 9 1.5585 3.3627 -6.1877 23 9 -0.4467 2.7701 -5.2679 24 9 0.1923 4.9635 -5.2987 25 6 1.8098 2.0237 -3.6690 26 1 -0.3634 -1.0230 -0.0981 27 1 -0.3633 0.4265 0.9351 28 1 -0.3634 0.5965 -0.8367 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.7185 0.3323 3.5315 32 1 1.4779 3.1070 -1.0732 33 1 4.1745 2.8180 -1.2942 34 1 4.4066 2.6679 -3.0538 35 1 2.4290 4.5227 -1.6497 36 1 3.9367 5.0150 -2.4579 37 1 2.4937 1.7911 -4.4852 38 1 0.9585 1.3437 -3.7007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310114517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = -209.960738 kcal Electronic energy + Delta-G solvation = -23879.993505 eV Core-core repulsion = 19920.957790 eV Total energy + Delta-G solvation = -3959.035714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.04496 -47.57089 -47.51372 -39.73530 -36.31596 -33.67836 -32.02256 -31.34888 -29.30551 -26.93888 -25.71596 -23.97100 -23.25771 -22.62185 -20.12885 -18.74298 -18.44923 -18.18939 -17.85389 -16.44989 -15.99286 -15.49073 -15.04073 -14.84136 -14.45460 -14.33421 -14.17496 -13.95972 -13.77309 -13.69215 -13.62863 -13.56770 -12.89877 -12.60303 -12.15020 -12.02136 -11.77162 -11.60578 -11.33673 -10.98497 -10.88263 -10.79678 -10.49100 -10.43947 -10.05968 -9.80217 -9.47152 -9.41980 -8.86351 -8.55439 -7.41632 -6.09721 -4.15647 2.56512 3.25092 3.30787 3.33099 3.39813 3.87083 4.06703 4.33009 4.56105 4.81465 4.94080 5.04508 5.08549 5.21414 5.23634 5.34872 5.54221 5.73093 5.83985 6.08652 6.15513 6.25312 6.31198 6.47613 6.64360 6.79360 6.94830 7.16712 7.21576 7.41803 7.65371 7.70375 7.75543 8.13905 8.26076 8.52567 8.91837 9.49676 10.96113 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.024769 B = 0.004898 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.174634 B = 5714.944884 C = 5859.734005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.089 3.911 15 H 0.085 0.915 16 C -0.187 4.187 17 C 0.066 3.934 18 O -0.371 6.371 19 C 0.052 3.948 20 H 0.109 0.891 21 C 0.463 3.537 22 F -0.179 7.179 23 F -0.175 7.175 24 F -0.181 7.181 25 C -0.137 4.137 26 H 0.012 0.988 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 4.203 -12.102 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.022 4.022 15 H 0.104 0.896 16 C -0.226 4.226 17 C -0.010 4.010 18 O -0.291 6.291 19 C -0.007 4.007 20 H 0.127 0.873 21 C 0.409 3.591 22 F -0.160 7.160 23 F -0.156 7.156 24 F -0.162 7.162 25 C -0.176 4.176 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.604 3.697 -12.293 12.851 hybrid contribution 0.258 0.836 1.157 1.451 sum -0.346 4.533 -11.137 12.029 Atomic orbital electron populations 1.21439 0.97453 0.97186 1.01574 1.21440 0.95163 0.98159 0.99311 1.19128 0.93488 0.91586 0.84774 0.97897 1.21108 1.31938 1.12067 0.90380 0.92480 1.24858 0.94994 0.94957 0.98815 1.69868 1.37270 1.23055 1.22365 0.86658 0.79543 0.79748 0.82055 1.20194 1.21323 1.20386 1.60877 1.46794 1.15881 1.07806 1.21500 0.90639 0.98997 0.91098 0.89638 1.22861 1.00107 0.96229 1.03450 1.22680 0.96129 0.97559 0.84625 1.87855 1.43310 1.59880 1.38026 1.23113 0.91543 0.93668 0.92412 0.87304 1.20321 0.77106 0.73731 0.87943 1.93170 1.66416 1.93291 1.63161 1.93199 1.56202 1.69589 1.96633 1.93187 1.89808 1.36589 1.96604 1.22245 1.02386 0.93686 0.99261 0.96847 0.92929 0.93490 0.89671 0.97141 0.92837 0.85276 0.89760 0.91192 0.91931 0.88196 0.90524 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.45 37.16 0.35 -2.21 16 2 C -0.10 -2.33 5.55 -26.73 -0.15 -2.48 16 3 C 0.22 4.93 2.11 -68.87 -0.15 4.78 16 4 H 0.00 0.08 7.12 -51.93 -0.37 -0.29 16 5 C -0.52 -12.94 7.31 -34.44 -0.25 -13.20 16 6 H 0.06 1.42 7.61 -52.49 -0.40 1.02 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -23.98 11.35 55.43 0.63 -23.35 16 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.68 -12.59 4.92 -100.77 -0.50 -13.09 16 14 C 0.09 1.39 2.69 -67.53 -0.18 1.21 16 15 H 0.09 1.43 7.16 -51.93 -0.37 1.06 16 16 C -0.19 -2.66 5.70 -26.59 -0.15 -2.81 16 17 C 0.07 0.88 6.58 37.21 0.24 1.12 16 18 O -0.37 -5.29 10.29 -35.23 -0.36 -5.65 16 19 C 0.05 0.72 2.38 -26.68 -0.06 0.65 16 20 H 0.11 1.50 7.37 -51.93 -0.38 1.12 16 21 C 0.46 6.26 2.85 37.16 0.11 6.36 16 22 F -0.18 -2.48 16.70 2.25 0.04 -2.44 16 23 F -0.17 -2.34 16.85 2.25 0.04 -2.30 16 24 F -0.18 -2.53 17.26 2.25 0.04 -2.49 16 25 C -0.14 -1.89 4.87 -26.59 -0.13 -2.02 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 1.22 7.36 -51.92 -0.38 0.84 16 28 H 0.05 0.96 7.52 -51.93 -0.39 0.57 16 29 H 0.08 2.18 6.14 -51.93 -0.32 1.86 16 30 H 0.01 0.21 7.45 -51.93 -0.39 -0.17 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.33 5.96 5.29 -39.29 -0.21 5.76 16 33 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.99 7.74 -51.93 -0.40 0.58 16 38 H 0.09 1.27 7.88 -51.93 -0.41 0.86 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -25.96 308.25 -6.10 -32.06 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.14 Total: 4.24 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.46 Total: -6.96 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.13 Total: -36.43 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.36 Total: -5.65 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -25.96 -6.10 -32.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310114517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.903 kcal (2) G-P(sol) polarization free energy of solvation -25.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds