Wall clock time and date at job start Tue Mar 31 2020 06:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 H 1.08995 * 109.46760 * 305.62953 * 3 2 1 5 5 C 1.50694 * 109.46738 * 185.62975 * 3 2 1 6 6 H 1.08000 * 120.00264 * 239.99889 * 5 3 2 7 7 C 1.37882 * 120.00172 * 60.00314 * 5 3 2 8 8 N 1.31518 * 119.99480 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00306 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47372 * 59.99631 * 9 7 5 11 11 H 1.48502 * 109.47192 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46964 * 299.99500 * 9 7 5 13 13 N 1.46901 * 109.47243 * 65.63152 * 3 2 1 14 14 C 1.46894 * 110.99803 * 203.78824 * 13 3 2 15 15 H 1.08998 * 109.54278 * 326.27619 * 14 13 3 16 16 C 1.53182 * 109.54365 * 86.45522 * 14 13 3 17 17 C 1.53089 * 109.16452 * 62.88261 * 16 14 13 18 18 O 1.42905 * 109.41154 * 57.61170 * 17 16 14 19 19 C 1.42897 * 114.09878 * 298.83665 * 18 17 16 20 20 H 1.09001 * 109.48101 * 301.17125 * 19 18 17 21 21 C 1.53001 * 109.48488 * 181.14387 * 19 18 17 22 22 F 1.39903 * 109.46603 * 59.99928 * 21 19 18 23 23 F 1.39894 * 109.47534 * 180.02562 * 21 19 18 24 24 F 1.39898 * 109.46703 * 300.00691 * 21 19 18 25 25 C 1.53095 * 109.41271 * 61.16258 * 19 18 17 26 26 H 1.09000 * 109.47140 * 294.31936 * 1 2 3 27 27 H 1.08997 * 109.46953 * 54.31820 * 1 2 3 28 28 H 1.09002 * 109.46933 * 174.31952 * 1 2 3 29 29 H 1.08998 * 109.46889 * 240.00170 * 2 1 3 30 30 H 1.08995 * 109.47139 * 119.99336 * 2 1 3 31 31 H 0.97006 * 119.99663 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99716 * 327.74340 * 13 3 2 33 33 H 1.09001 * 109.52147 * 182.79321 * 16 14 13 34 34 H 1.09006 * 109.52074 * 302.97460 * 16 14 13 35 35 H 1.09003 * 109.47831 * 177.59248 * 17 16 14 36 36 H 1.09001 * 109.47803 * 297.61601 * 17 16 14 37 37 H 1.09002 * 109.52379 * 182.48769 * 25 19 18 38 38 H 1.08997 * 109.52207 * 62.29478 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 3.5405 1.4449 -0.1394 6 1 4.1539 1.8866 0.6320 7 6 4.1304 0.8830 -1.2518 8 7 3.3835 0.3447 -2.1910 9 14 5.9903 0.8864 -1.4250 10 1 6.5948 0.1483 -0.2870 11 1 6.3700 0.2266 -2.7000 12 1 6.4848 2.2867 -1.4254 13 7 1.6645 2.0948 1.2616 14 6 1.6119 3.5543 1.1044 15 1 2.3713 3.8717 0.3898 16 6 0.2265 3.9654 0.5962 17 6 -0.8255 3.5841 1.6410 18 8 -0.5120 4.2165 2.8835 19 6 0.7514 3.8337 3.4306 20 1 0.7677 2.7552 3.5877 21 6 0.9663 4.5473 4.7668 22 9 -0.0539 4.1906 5.6552 23 9 2.2034 4.1729 5.3019 24 9 0.9457 5.9315 4.5647 25 6 1.8668 4.2250 2.4577 26 1 -0.3633 0.4232 0.9365 27 1 -0.3633 0.5994 -0.8347 28 1 -0.3633 -1.0226 -0.1017 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7985 -0.0509 -2.9735 32 1 0.7866 1.7363 1.6066 33 1 0.2035 5.0428 0.4325 34 1 0.0140 3.4491 -0.3400 35 1 -1.8086 3.9127 1.3037 36 1 -0.8299 2.5023 1.7744 37 1 2.8274 3.8944 2.8528 38 1 1.8769 5.3076 2.3316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310114518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:00 Heat of formation + Delta-G solvation = -209.789927 kcal Electronic energy + Delta-G solvation = -23886.150550 eV Core-core repulsion = 19927.122242 eV Total energy + Delta-G solvation = -3959.028307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02701 -47.55172 -47.49720 -39.74813 -36.35300 -33.59816 -32.06316 -31.61725 -29.43828 -26.79169 -26.14653 -23.96138 -22.95502 -22.54402 -19.88869 -19.30913 -18.45685 -18.13597 -17.87358 -16.29741 -16.02009 -15.50004 -15.16870 -14.95851 -14.42167 -14.31477 -14.18343 -13.94260 -13.83123 -13.66931 -13.62196 -13.46380 -13.07447 -12.79680 -12.09085 -11.98426 -11.91507 -11.53214 -11.33574 -11.19021 -10.93114 -10.74829 -10.70148 -10.49281 -10.02246 -9.78701 -9.69561 -9.41688 -9.14681 -8.41557 -7.40260 -6.03440 -4.07942 2.57579 3.30209 3.34900 3.38231 3.39710 3.89045 4.08562 4.39160 4.56953 4.85818 4.94941 5.03926 5.07599 5.18596 5.24820 5.35718 5.51013 5.73944 5.87694 6.05157 6.07034 6.10654 6.21178 6.28532 6.36834 6.44868 6.74175 6.91919 6.99604 7.07712 7.39055 7.68607 7.83461 8.15956 8.29756 8.62107 8.99578 9.57538 11.01831 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.005320 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.481485 B = 5261.747629 C = 5927.183610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.095 3.905 15 H 0.098 0.902 16 C -0.188 4.188 17 C 0.066 3.934 18 O -0.371 6.371 19 C 0.052 3.948 20 H 0.108 0.892 21 C 0.463 3.537 22 F -0.181 7.181 23 F -0.174 7.174 24 F -0.178 7.178 25 C -0.138 4.138 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.314 0.686 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 6.392 8.604 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.016 4.016 15 H 0.116 0.884 16 C -0.228 4.228 17 C -0.010 4.010 18 O -0.290 6.290 19 C -0.008 4.008 20 H 0.125 0.875 21 C 0.409 3.591 22 F -0.163 7.163 23 F -0.155 7.155 24 F -0.160 7.160 25 C -0.176 4.176 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.851 6.426 8.783 12.860 hybrid contribution 0.331 -0.045 -0.626 0.710 sum -6.519 6.382 8.157 12.238 Atomic orbital electron populations 1.21903 0.99679 0.99890 0.99282 1.21783 0.91138 1.00405 1.03212 1.19173 0.95504 0.89914 0.84079 0.97808 1.21160 0.91177 1.36888 1.04308 0.92054 1.24949 0.98111 0.95534 0.95825 1.69857 1.34827 1.39265 1.09582 0.86607 0.85711 0.78172 0.77175 1.20299 1.21463 1.20415 1.60883 1.34878 1.01765 1.33929 1.21443 0.95334 0.90189 0.94629 0.88437 1.22889 0.97622 1.02680 0.99594 1.22687 0.98742 0.97057 0.82529 1.87852 1.33812 1.68996 1.38340 1.23136 0.88007 0.99965 0.89656 0.87478 1.20309 0.73849 0.77669 0.87256 1.93182 1.60062 1.91604 1.71430 1.93202 1.43465 1.91278 1.87586 1.93172 1.96116 1.31637 1.95064 1.22266 0.98010 1.01120 0.96229 0.94899 0.93824 0.94256 0.88134 0.94014 0.92973 0.86644 0.90904 0.90134 0.88245 0.92478 0.88824 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.64 37.16 0.36 -2.32 16 2 C -0.13 -2.80 5.37 -26.72 -0.14 -2.94 16 3 C 0.22 5.03 1.85 -68.86 -0.13 4.90 16 4 H 0.00 0.11 7.22 -51.93 -0.37 -0.27 16 5 C -0.50 -12.93 8.44 -34.44 -0.29 -13.22 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.48 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -12.86 5.64 -100.76 -0.57 -13.43 16 14 C 0.10 1.59 2.68 -67.53 -0.18 1.41 16 15 H 0.10 1.85 7.58 -51.93 -0.39 1.46 16 16 C -0.19 -2.69 5.70 -26.59 -0.15 -2.84 16 17 C 0.07 0.85 6.58 37.20 0.24 1.09 16 18 O -0.37 -5.25 10.29 -35.23 -0.36 -5.61 16 19 C 0.05 0.72 2.38 -26.68 -0.06 0.66 16 20 H 0.11 1.49 7.41 -51.93 -0.38 1.10 16 21 C 0.46 6.38 2.85 37.16 0.11 6.49 16 22 F -0.18 -2.54 17.26 2.25 0.04 -2.50 16 23 F -0.17 -2.41 16.85 2.25 0.04 -2.37 16 24 F -0.18 -2.53 16.70 2.25 0.04 -2.49 16 25 C -0.14 -2.03 4.87 -26.59 -0.13 -2.16 16 26 H 0.03 0.51 6.28 -51.93 -0.33 0.19 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 2.54 5.94 -51.93 -0.31 2.23 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.31 5.40 3.76 -39.29 -0.15 5.25 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.73 6.05 -51.93 -0.31 0.42 16 37 H 0.09 1.43 7.88 -51.93 -0.41 1.02 16 38 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -26.66 308.73 -6.14 -32.80 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.11 Total: 4.49 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.47 Total: -7.52 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.06 Total: -37.29 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.36 Total: -5.61 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.11 Total: -7.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.66 -6.14 -32.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310114518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.990 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds