Wall clock time and date at job start Tue Mar 31 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.12654 * 2 1 4 4 C 1.50631 * 109.30188 * 119.48258 * 2 1 3 5 5 C 1.38713 * 118.38898 * 317.72892 * 4 2 1 6 6 C 1.38247 * 120.41149 * 180.42648 * 5 4 2 7 7 F 1.35095 * 120.07813 * 180.02562 * 6 5 4 8 8 C 1.38440 * 119.84140 * 359.97438 * 6 5 4 9 9 C 1.38219 * 119.77708 * 359.89855 * 8 6 5 10 10 F 1.35102 * 119.83766 * 180.02562 * 9 8 6 11 11 C 1.37817 * 121.84020 * 137.97440 * 4 2 1 12 12 C 1.50722 * 121.66187 * 359.46063 * 11 4 2 13 13 C 1.52881 * 109.97446 * 16.90264 * 12 11 4 14 14 N 1.46627 * 109.30139 * 240.51929 * 2 1 3 15 15 C 1.46905 * 110.99788 * 310.49731 * 14 2 1 16 16 C 1.53007 * 109.47073 * 175.69073 * 15 14 2 17 17 C 1.50697 * 109.46663 * 182.97812 * 16 15 14 18 18 H 1.08000 * 120.00902 * 1.15160 * 17 16 15 19 19 C 1.37881 * 119.99420 * 181.16010 * 17 16 15 20 20 N 1.31523 * 119.99806 * 174.29593 * 19 17 16 21 21 Si 1.86795 * 120.00241 * 354.29300 * 19 17 16 22 22 H 1.48508 * 109.46835 * 93.55814 * 21 19 17 23 23 H 1.48498 * 109.47391 * 213.55777 * 21 19 17 24 24 H 1.48500 * 109.47383 * 333.56134 * 21 19 17 25 25 H 1.09002 * 109.46936 * 179.48802 * 1 2 3 26 26 H 1.09005 * 109.47573 * 299.47858 * 1 2 3 27 27 H 1.08999 * 109.47524 * 59.48588 * 1 2 3 28 28 H 1.08005 * 119.79265 * 0.41106 * 5 4 2 29 29 H 1.08006 * 120.11539 * 179.88503 * 8 6 5 30 30 H 1.08999 * 109.38744 * 256.74117 * 12 11 4 31 31 H 1.09002 * 109.30095 * 137.00378 * 12 11 4 32 32 H 1.09007 * 109.63156 * 189.94343 * 13 12 11 33 33 H 1.08998 * 109.63204 * 69.36252 * 13 12 11 34 34 H 1.08997 * 109.47190 * 55.68867 * 15 14 2 35 35 H 1.08994 * 109.47276 * 295.68989 * 15 14 2 36 36 H 1.09000 * 109.46618 * 302.97041 * 16 15 14 37 37 H 1.08993 * 109.47039 * 62.97241 * 16 15 14 38 38 H 0.96999 * 119.99855 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8871 1.0298 0.0000 4 6 2.0279 -0.6997 1.2375 5 6 1.3936 -0.4384 2.4432 6 6 1.8219 -1.0507 3.6063 7 9 1.1989 -0.7917 4.7768 8 6 2.8899 -1.9308 3.5686 9 6 3.5206 -2.1936 2.3671 10 9 4.5627 -3.0526 2.3288 11 6 3.0890 -1.5782 1.1989 12 6 3.8048 -1.8981 -0.0884 13 6 3.4761 -0.8430 -1.1448 14 7 2.0146 -0.6810 -1.2047 15 6 1.3480 -1.9783 -1.3802 16 6 1.7986 -2.6089 -2.6994 17 6 1.0601 -3.9048 -2.9147 18 1 0.3278 -4.2355 -2.1931 19 6 1.3196 -4.6684 -4.0331 20 7 0.7597 -5.8511 -4.1661 21 14 2.4661 -4.0233 -5.3592 22 1 3.8445 -4.5131 -5.1029 23 1 2.0083 -4.5056 -6.6869 24 1 2.4572 -2.5384 -5.3419 25 1 -0.3633 -1.0277 -0.0092 26 1 -0.3634 0.5057 0.8946 27 1 -0.3634 0.5218 -0.8853 28 1 0.5602 0.2479 2.4735 29 1 3.2293 -2.4102 4.4749 30 1 3.4878 -2.8781 -0.4448 31 1 4.8800 -1.9085 0.0902 32 1 3.8485 -1.1688 -2.1161 33 1 3.9387 0.1054 -0.8715 34 1 0.2680 -1.8325 -1.3974 35 1 1.6125 -2.6375 -0.5534 36 1 1.5818 -1.9263 -3.5211 37 1 2.8704 -2.8033 -2.6618 38 1 0.9419 -6.3881 -4.9530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336050247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:18 Heat of formation + Delta-G solvation = -62.307922 kcal Electronic energy + Delta-G solvation = -22475.668419 eV Core-core repulsion = 18953.804636 eV Total energy + Delta-G solvation = -3521.863783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.10821 -49.04058 -40.60713 -37.27518 -33.68533 -33.20204 -31.64010 -29.86422 -29.48407 -27.25480 -25.50505 -23.53239 -23.20715 -21.44085 -20.94784 -18.89444 -17.82353 -17.41687 -16.78178 -16.20091 -16.08442 -15.70357 -15.58173 -15.31773 -14.79625 -14.55866 -14.19704 -13.96099 -13.78731 -13.23818 -12.78319 -12.56137 -12.54114 -12.24831 -12.16078 -11.86242 -11.62776 -11.43847 -11.20215 -11.02243 -10.80323 -10.70472 -9.89789 -9.88813 -9.76340 -9.22047 -8.95119 -8.61710 -8.52593 -8.00780 -6.06065 -4.03751 0.86071 0.87147 3.20526 3.29870 3.38518 3.43561 3.73934 4.09410 4.34440 4.44683 4.45173 4.56571 4.70900 4.84567 5.08372 5.25086 5.28406 5.33071 5.42661 5.53561 5.54179 5.67760 5.78104 5.84618 5.89122 5.96805 6.04812 6.09758 6.22628 6.26873 6.31269 6.37095 6.68155 6.75388 7.11839 7.20944 7.46354 7.56368 7.81610 8.51318 8.98565 9.56675 11.07330 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.005045 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.668672 B = 5548.915184 C = 5891.454334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 H 0.097 0.903 4 C -0.049 4.049 5 C -0.158 4.158 6 C 0.120 3.880 7 F -0.135 7.135 8 C -0.195 4.195 9 C 0.129 3.871 10 F -0.129 7.129 11 C -0.108 4.108 12 C -0.123 4.123 13 C 0.055 3.945 14 N -0.523 5.523 15 C 0.057 3.943 16 C -0.008 4.008 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.069 3.931 20 N -0.902 5.902 21 Si 0.877 3.123 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.025 0.975 37 H 0.011 0.989 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 12.975 13.255 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.008 3.992 3 H 0.115 0.885 4 C -0.051 4.051 5 C -0.177 4.177 6 C 0.101 3.899 7 F -0.114 7.114 8 C -0.215 4.215 9 C 0.109 3.891 10 F -0.107 7.107 11 C -0.109 4.109 12 C -0.161 4.161 13 C -0.073 4.073 14 N -0.244 5.244 15 C -0.070 4.070 16 C -0.046 4.046 17 C -0.560 4.560 18 H 0.088 0.912 19 C -0.132 4.132 20 N -0.541 5.541 21 Si 0.704 3.296 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.351 13.095 12.732 18.775 hybrid contribution 0.894 -0.653 0.409 1.180 sum 5.245 12.443 13.141 18.842 Atomic orbital electron populations 1.22055 0.93039 1.03433 1.02230 1.20724 0.96166 0.97644 0.84663 0.88523 1.20253 0.93221 0.95293 0.96329 1.21185 1.02649 1.03130 0.90756 1.17154 0.93200 0.97905 0.81654 1.91511 1.81257 1.92782 1.45804 1.20912 0.98840 1.03062 0.98676 1.17236 0.87065 0.91462 0.93320 1.91517 1.54763 1.67311 1.97149 1.19746 0.97887 0.98383 0.94885 1.21143 0.99964 1.02875 0.92102 1.22199 0.88980 0.97370 0.98768 1.62864 1.04548 1.23825 1.33192 1.22368 0.98782 0.86474 0.99352 1.19587 0.96167 0.96031 0.92777 1.21048 1.23334 1.03560 1.08020 0.91204 1.24986 0.95739 0.94426 0.98099 1.69929 1.44743 1.10454 1.28978 0.86787 0.81119 0.80179 0.81517 1.20451 1.21371 1.18616 0.91280 0.92216 0.90860 0.83870 0.83683 0.88248 0.90100 0.89055 0.91068 0.90586 0.94860 0.95643 0.97084 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.14 37.16 0.30 -1.48 16 2 C 0.12 1.50 2.83 -69.05 -0.20 1.31 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.05 -0.64 5.01 -104.63 -0.52 -1.16 16 5 C -0.16 -1.85 9.06 -39.40 -0.36 -2.21 16 6 C 0.12 1.47 7.30 -39.50 -0.29 1.18 16 7 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 8 C -0.20 -2.41 10.01 -39.51 -0.40 -2.80 16 9 C 0.13 1.78 7.23 -39.34 -0.28 1.49 16 10 F -0.13 -1.85 16.56 2.25 0.04 -1.81 16 11 C -0.11 -1.53 5.07 -104.51 -0.53 -2.06 16 12 C -0.12 -1.79 4.79 -27.93 -0.13 -1.93 16 13 C 0.06 0.79 5.47 -3.74 -0.02 0.77 16 14 N -0.52 -8.21 4.93 -228.14 -1.12 -9.34 16 15 C 0.06 1.08 3.66 -3.82 -0.01 1.07 16 16 C -0.01 -0.18 3.69 -27.88 -0.10 -0.29 16 17 C -0.52 -14.56 9.65 -34.44 -0.33 -14.89 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 19 C 0.07 1.98 5.47 -17.81 -0.10 1.88 16 20 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 21 Si 0.88 21.42 27.55 -169.99 -4.68 16.73 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.26 -6.14 6.45 56.52 0.36 -5.78 16 25 H 0.07 0.94 6.20 -51.93 -0.32 0.62 16 26 H 0.06 0.56 6.42 -51.93 -0.33 0.22 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.14 1.37 6.39 -52.48 -0.34 1.04 16 29 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.10 1.71 6.42 -51.93 -0.33 1.38 16 31 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.09 1.39 6.84 -51.92 -0.36 1.03 16 33 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.08 1.47 5.90 -51.93 -0.31 1.16 16 35 H 0.03 0.66 5.49 -51.93 -0.29 0.38 16 36 H 0.03 0.60 7.04 -51.93 -0.37 0.24 16 37 H 0.01 0.25 5.96 -51.93 -0.31 -0.06 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -29.91 301.58 -8.02 -37.93 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.63 Total: -0.50 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.97 Total: -19.11 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.35 Total: -36.20 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.68 Total: 16.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.91 -8.02 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336050247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.376 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds