Wall clock time and date at job start Tue Mar 31 2020 07:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.23978 * 2 1 4 4 C 1.50624 * 109.26892 * 240.50771 * 2 1 3 5 5 C 1.38721 * 118.39390 * 42.24201 * 4 2 1 6 6 C 1.38250 * 120.41266 * 179.74940 * 5 4 2 7 7 F 1.35103 * 120.07735 * 179.97438 * 6 5 4 8 8 C 1.38447 * 119.84279 * 359.93731 * 6 5 4 9 9 C 1.38205 * 119.77479 * 0.10817 * 8 6 5 10 10 F 1.35104 * 119.83489 * 180.02562 * 9 8 6 11 11 C 1.37815 * 121.84516 * 222.37913 * 4 2 1 12 12 C 1.50727 * 121.65981 * 0.07675 * 11 4 2 13 13 C 1.52893 * 110.02066 * 343.44819 * 12 11 4 14 14 N 1.46629 * 109.27035 * 119.48904 * 2 1 3 15 15 C 1.46902 * 111.00008 * 49.36661 * 14 2 1 16 16 C 1.52999 * 109.47457 * 169.99872 * 15 14 2 17 17 C 1.50697 * 109.47180 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00358 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99745 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00118 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47472 * 89.99785 * 21 19 17 23 23 H 1.48500 * 109.47135 * 209.99848 * 21 19 17 24 24 H 1.48499 * 109.47497 * 329.99737 * 21 19 17 25 25 H 1.09001 * 109.47579 * 179.49545 * 1 2 3 26 26 H 1.09010 * 109.46898 * 299.49342 * 1 2 3 27 27 H 1.08998 * 109.47361 * 59.48622 * 1 2 3 28 28 H 1.07993 * 119.78923 * 359.76567 * 5 4 2 29 29 H 1.07996 * 120.10875 * 180.02562 * 8 6 5 30 30 H 1.09000 * 109.53669 * 223.16473 * 12 11 4 31 31 H 1.08999 * 109.09220 * 103.45394 * 12 11 4 32 32 H 1.08995 * 109.63442 * 290.50104 * 13 12 11 33 33 H 1.08996 * 109.63003 * 169.90706 * 13 12 11 34 34 H 1.09003 * 109.46700 * 290.00093 * 15 14 2 35 35 H 1.09004 * 109.46826 * 49.99410 * 15 14 2 36 36 H 1.09002 * 109.46473 * 300.00092 * 16 15 14 37 37 H 1.09000 * 109.46654 * 59.99583 * 16 15 14 38 38 H 0.97005 * 119.99787 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0270 -0.7000 -1.2376 5 6 1.3919 -0.4393 -2.4430 6 6 1.8171 -1.0548 -3.6056 7 9 1.1933 -0.7963 -4.7758 8 6 2.8842 -1.9361 -3.5680 9 6 3.5168 -2.1970 -2.3673 10 9 4.5585 -3.0564 -2.3293 11 6 3.0833 -1.5843 -1.1982 12 6 3.8010 -1.9026 0.0884 13 6 3.4750 -0.8464 1.1448 14 7 2.0139 -0.6813 1.2048 15 6 1.3445 -1.9770 1.3816 16 6 2.0422 -2.7641 2.4927 17 6 1.3551 -4.0930 2.6745 18 1 0.5061 -4.3506 2.0588 19 6 1.8106 -4.9799 3.6268 20 7 2.8448 -4.6664 4.3763 21 14 0.9594 -6.6274 3.8517 22 1 1.5934 -7.6371 2.9664 23 1 1.0854 -7.0607 5.2664 24 1 -0.4775 -6.4943 3.5009 25 1 -0.3634 -1.0276 -0.0090 26 1 -0.3633 0.5060 0.8946 27 1 -0.3634 0.5218 -0.8853 28 1 0.5603 0.2490 -2.4734 29 1 3.2202 -2.4190 -4.4737 30 1 4.8765 -1.9179 -0.0882 31 1 3.4787 -2.8814 0.4437 32 1 3.9396 0.1008 0.8712 33 1 3.8468 -1.1729 2.1160 34 1 0.3014 -1.8131 1.6523 35 1 1.3938 -2.5415 0.4504 36 1 3.0853 -2.9279 2.2219 37 1 1.9929 -2.1996 3.4238 38 1 3.1650 -5.2903 5.0466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336050248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:21 Heat of formation + Delta-G solvation = -66.082970 kcal Electronic energy + Delta-G solvation = -22541.579529 eV Core-core repulsion = 19019.552048 eV Total energy + Delta-G solvation = -3522.027481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.05238 -48.94916 -40.52427 -37.19840 -33.70038 -33.08903 -31.48803 -29.61619 -29.19979 -27.16616 -25.24064 -23.43220 -23.31687 -21.35525 -21.05660 -18.81864 -17.72797 -17.34388 -16.50639 -16.12299 -15.99042 -15.50514 -15.43933 -15.17018 -14.78230 -14.45708 -14.25711 -13.97794 -13.81921 -13.11367 -12.57508 -12.36754 -12.21012 -12.10465 -12.06267 -11.70907 -11.43836 -11.35151 -11.04424 -10.91598 -10.72064 -10.56221 -10.48226 -9.96689 -9.39592 -9.14664 -8.87587 -8.52952 -8.34095 -7.86391 -6.03239 -4.05297 0.93566 0.95086 3.28481 3.30346 3.37038 3.40041 3.81375 4.19234 4.41303 4.44965 4.58230 4.67761 4.77720 4.94590 5.18714 5.33227 5.33603 5.47364 5.56998 5.61991 5.66577 5.75561 5.87262 5.94553 5.96848 6.04771 6.24187 6.26129 6.29909 6.40573 6.48426 6.50527 6.77166 6.90253 7.40260 7.49848 7.69747 7.81281 8.00845 8.39325 9.01114 9.58827 11.07950 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.005171 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.655235 B = 5413.283593 C = 5753.403493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.116 3.884 3 H 0.096 0.904 4 C -0.050 4.050 5 C -0.158 4.158 6 C 0.117 3.883 7 F -0.136 7.136 8 C -0.196 4.196 9 C 0.127 3.873 10 F -0.129 7.129 11 C -0.103 4.103 12 C -0.125 4.125 13 C 0.057 3.943 14 N -0.522 5.522 15 C 0.054 3.946 16 C 0.019 3.981 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 9.970 -13.303 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.113 0.887 4 C -0.052 4.052 5 C -0.178 4.178 6 C 0.098 3.902 7 F -0.115 7.115 8 C -0.215 4.215 9 C 0.108 3.892 10 F -0.107 7.107 11 C -0.104 4.104 12 C -0.163 4.163 13 C -0.071 4.071 14 N -0.243 5.243 15 C -0.072 4.072 16 C -0.018 4.018 17 C -0.560 4.560 18 H 0.071 0.929 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.162 10.180 -12.753 16.318 hybrid contribution -0.097 -1.759 -0.989 2.021 sum -0.260 8.420 -13.742 16.119 Atomic orbital electron populations 1.21993 0.93228 1.03119 1.02093 1.20743 0.96000 0.97698 0.84864 0.88662 1.20259 0.93380 0.95289 0.96292 1.21172 1.02652 1.03131 0.90822 1.17146 0.93343 0.98116 0.81633 1.91505 1.81258 1.92842 1.45882 1.20896 0.98843 1.03115 0.98670 1.17251 0.87096 0.91590 0.93304 1.91518 1.54779 1.67277 1.97147 1.19829 0.97710 0.97889 0.95013 1.21269 0.99817 1.03377 0.91858 1.22195 0.88715 0.96957 0.99251 1.62869 1.04766 1.23848 1.32814 1.22456 0.98624 0.86630 0.99508 1.19296 0.95790 0.93746 0.92949 1.21156 1.14904 1.01152 1.18824 0.92868 1.24961 0.95062 0.98348 0.95752 1.69955 1.24764 1.36167 1.22287 0.86629 0.80032 0.84243 0.77323 1.20726 1.21174 1.19889 0.91629 0.90989 0.92348 0.83998 0.83779 0.90255 0.87536 0.91491 0.88401 0.91525 0.95573 0.95777 0.95724 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.09 37.15 0.30 -1.50 16 2 C 0.12 1.58 2.84 -69.05 -0.20 1.38 16 3 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.05 -0.70 4.84 -104.64 -0.51 -1.20 16 5 C -0.16 -1.96 9.06 -39.40 -0.36 -2.31 16 6 C 0.12 1.49 7.30 -39.50 -0.29 1.20 16 7 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 8 C -0.20 -2.54 10.01 -39.52 -0.40 -2.94 16 9 C 0.13 1.87 7.23 -39.34 -0.28 1.59 16 10 F -0.13 -1.98 16.56 2.25 0.04 -1.94 16 11 C -0.10 -1.58 5.06 -104.51 -0.53 -2.11 16 12 C -0.13 -2.03 4.63 -27.93 -0.13 -2.16 16 13 C 0.06 0.91 5.39 -3.73 -0.02 0.89 16 14 N -0.52 -8.71 5.03 -228.15 -1.15 -9.86 16 15 C 0.05 1.08 3.33 -3.82 -0.01 1.07 16 16 C 0.02 0.47 4.01 -27.88 -0.11 0.36 16 17 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 25 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 26 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.06 0.56 6.47 -51.93 -0.34 0.23 16 28 H 0.14 1.44 6.41 -52.49 -0.34 1.10 16 29 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.11 2.07 5.61 -51.93 -0.29 1.78 16 32 H 0.07 0.91 8.05 -51.93 -0.42 0.50 16 33 H 0.10 1.73 6.72 -51.93 -0.35 1.38 16 34 H 0.07 1.33 6.86 -51.93 -0.36 0.98 16 35 H 0.03 0.54 6.03 -51.93 -0.31 0.22 16 36 H 0.02 0.61 5.04 -51.93 -0.26 0.35 16 37 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -28.77 303.57 -8.37 -37.13 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.65 Total: -0.47 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.94 Total: -18.78 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.41 Total: -35.26 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.77 -8.37 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336050248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.949 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds