Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53172 * 1 3 3 C 1.54245 * 107.65673 * 2 1 4 4 C 1.52916 * 109.45217 * 243.01891 * 2 1 3 5 5 N 1.46939 * 109.73829 * 283.81607 * 4 2 1 6 6 C 1.46898 * 111.03594 * 175.07840 * 5 4 2 7 7 C 1.50696 * 109.47212 * 57.41554 * 6 5 4 8 8 H 1.08001 * 119.99924 * 5.08776 * 7 6 5 9 9 C 1.37878 * 119.99956 * 185.08055 * 7 6 5 10 10 N 1.31511 * 120.00285 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99678 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47019 * 90.00440 * 11 9 7 13 13 H 1.48502 * 109.47216 * 210.00246 * 11 9 7 14 14 H 1.48494 * 109.47391 * 330.00092 * 11 9 7 15 15 C 1.47079 * 109.53418 * 297.98713 * 5 4 2 16 16 C 1.53157 * 108.84278 * 63.76633 * 15 5 4 17 17 C 1.53002 * 109.55848 * 72.52638 * 16 15 5 18 18 C 1.54133 * 107.88496 * 189.78672 * 16 15 5 19 19 F 1.39901 * 109.47322 * 180.53929 * 18 16 15 20 20 F 1.39905 * 109.46883 * 300.53909 * 18 16 15 21 21 F 1.39901 * 109.47102 * 60.53374 * 18 16 15 22 22 O 1.41499 * 111.40651 * 118.62033 * 2 1 3 23 23 H 1.09000 * 109.47105 * 301.38239 * 1 2 3 24 24 H 1.09005 * 109.46500 * 61.38236 * 1 2 3 25 25 H 1.08997 * 109.46830 * 181.37690 * 1 2 3 26 26 H 1.08999 * 109.47031 * 180.59012 * 3 2 1 27 27 H 1.09004 * 109.47000 * 300.58909 * 3 2 1 28 28 H 1.09003 * 109.47513 * 60.58894 * 3 2 1 29 29 H 1.09076 * 109.53989 * 44.02294 * 4 2 1 30 30 H 1.09115 * 109.45947 * 163.74770 * 4 2 1 31 31 H 1.08998 * 109.47482 * 177.42343 * 6 5 4 32 32 H 1.09001 * 109.46857 * 297.41540 * 6 5 4 33 33 H 0.97002 * 120.00391 * 179.97438 * 10 9 7 34 34 H 1.08907 * 109.60120 * 303.90056 * 15 5 4 35 35 H 1.08956 * 109.51995 * 183.46962 * 15 5 4 36 36 H 1.09000 * 109.46881 * 296.35654 * 17 16 15 37 37 H 1.08995 * 109.47078 * 56.35699 * 17 16 15 38 38 H 1.09001 * 109.47044 * 176.35391 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5317 0.0000 0.0000 3 6 1.9996 1.4698 0.0000 4 6 2.0410 -0.6542 -1.2849 5 7 1.8948 -2.1132 -1.1906 6 6 2.2667 -2.7632 -2.4544 7 6 3.6820 -2.3906 -2.8134 8 1 4.2764 -1.8042 -2.1284 9 6 4.2182 -2.7985 -4.0164 10 7 3.4944 -3.5122 -4.8507 11 14 5.9729 -2.3371 -4.4611 12 1 6.9001 -3.3903 -3.9745 13 1 6.0938 -2.2142 -5.9361 14 1 6.3199 -1.0403 -3.8263 15 6 2.7133 -2.6186 -0.0780 16 6 2.1768 -2.0385 1.2340 17 6 0.8471 -2.7091 1.5847 18 6 3.1868 -2.3754 2.3485 19 9 2.7220 -1.8700 3.5675 20 9 3.3303 -3.7638 2.4437 21 9 4.4248 -1.7983 2.0460 22 8 2.0482 -0.6310 1.1564 23 1 -0.3633 0.5352 0.8773 24 1 -0.3632 0.4923 -0.9022 25 1 -0.3633 -1.0274 0.0247 26 1 3.0890 1.5043 -0.0106 27 1 1.6114 1.9746 -0.8847 28 1 1.6289 1.9691 0.8952 29 1 1.4655 -0.2853 -2.1350 30 1 3.0933 -0.4039 -1.4279 31 1 2.1930 -3.8449 -2.3421 32 1 1.5925 -2.4333 -3.2448 33 1 3.8715 -3.7989 -5.6973 34 1 3.7488 -2.3112 -0.2172 35 1 2.6534 -3.7060 -0.0466 36 1 0.1083 -2.4736 0.8187 37 1 0.9869 -3.7889 1.6351 38 1 0.4988 -2.3424 2.5503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336323046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = -196.831998 kcal Electronic energy + Delta-G solvation = -24673.265800 eV Core-core repulsion = 20714.799390 eV Total energy + Delta-G solvation = -3958.466409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.86905 -47.39590 -47.32157 -39.88619 -35.63147 -34.57809 -32.55992 -30.99082 -27.36989 -27.12844 -26.20904 -25.86781 -24.22165 -21.89283 -21.02582 -18.63875 -18.18240 -18.04335 -17.64653 -16.55036 -15.87515 -15.22085 -14.67515 -14.52556 -14.37067 -14.14503 -13.91314 -13.85326 -13.77175 -13.52593 -13.48330 -13.12296 -12.74835 -12.48632 -12.38576 -12.11369 -11.98048 -11.86472 -11.77119 -11.25461 -11.23923 -10.95691 -10.76402 -10.62023 -10.31874 -10.14884 -9.94822 -9.69383 -9.32115 -8.53295 -7.46959 -6.13850 -4.23362 2.66693 3.22302 3.29566 3.32594 3.42145 3.95791 4.25983 4.33186 4.63844 4.82506 4.91604 5.04280 5.17602 5.20637 5.29702 5.42911 5.60733 5.80633 5.83398 5.87592 5.93141 6.01244 6.08342 6.21841 6.25265 6.32628 6.37986 6.53026 6.63124 7.01154 7.38122 7.60445 7.72410 7.80821 7.95837 8.13305 8.85082 9.44570 10.91806 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.006868 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.555121 B = 4075.834001 C = 4653.628828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 C -0.140 4.140 4 C 0.032 3.968 5 N -0.524 5.524 6 C 0.187 3.813 7 C -0.556 4.556 8 H 0.058 0.942 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.889 3.111 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.029 3.971 16 C 0.104 3.896 17 C -0.171 4.171 18 C 0.457 3.543 19 F -0.181 7.181 20 F -0.176 7.176 21 F -0.177 7.177 22 O -0.370 6.370 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 4.890 11.752 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.091 3.909 3 C -0.198 4.198 4 C -0.097 4.097 5 N -0.248 5.248 6 C 0.062 3.938 7 C -0.595 4.595 8 H 0.076 0.924 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.716 3.284 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.101 4.101 16 C 0.062 3.938 17 C -0.228 4.228 18 C 0.402 3.598 19 F -0.162 7.162 20 F -0.158 7.158 21 F -0.159 7.159 22 O -0.289 6.289 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.355 4.780 11.807 13.818 hybrid contribution 2.079 0.116 -0.596 2.166 sum -3.276 4.896 11.211 12.664 Atomic orbital electron populations 1.22408 0.95109 1.03082 1.01568 1.21588 0.93197 0.91739 0.84342 1.22123 1.02121 0.93421 1.02145 1.22684 1.01118 0.89977 0.95907 1.63073 1.51653 1.03648 1.06378 1.19822 0.94903 0.94565 0.84502 1.21698 0.99357 1.35033 1.03409 0.92431 1.24936 0.97716 0.94681 0.96186 1.69929 1.36612 1.36290 1.09778 0.86641 0.85013 0.79043 0.77662 1.20508 1.21040 1.19862 1.22659 0.97260 1.00785 0.89363 1.22313 0.93859 0.84346 0.93288 1.22424 0.96355 1.00907 1.03136 1.20829 0.81640 0.74204 0.83102 1.93147 1.88472 1.87199 1.47394 1.93169 1.96018 1.30178 1.96416 1.93180 1.45338 1.84406 1.92928 1.86595 1.84455 1.17106 1.40762 0.92780 0.91647 0.91209 0.92008 0.90839 0.92066 0.89942 0.92883 0.95033 0.94122 0.92657 0.92249 0.89268 0.88845 0.90674 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.45 37.25 0.31 -1.87 16 2 C 0.13 2.01 1.12 -89.92 -0.10 1.91 16 3 C -0.14 -1.85 8.61 37.81 0.33 -1.53 16 4 C 0.03 0.59 3.78 -3.85 -0.01 0.58 16 5 N -0.52 -10.46 4.76 -235.82 -1.12 -11.58 16 6 C 0.19 4.54 5.16 -4.98 -0.03 4.51 16 7 C -0.56 -14.68 7.71 -34.44 -0.27 -14.94 16 8 H 0.06 1.53 5.72 -52.49 -0.30 1.23 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 11 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.03 0.54 3.59 -3.65 -0.01 0.53 16 16 C 0.10 1.70 0.62 -89.95 -0.06 1.65 16 17 C -0.17 -2.38 8.17 37.16 0.30 -2.08 16 18 C 0.46 7.40 2.31 37.75 0.09 7.49 16 19 F -0.18 -2.82 16.67 2.25 0.04 -2.78 16 20 F -0.18 -2.75 16.25 2.25 0.04 -2.71 16 21 F -0.18 -3.12 16.51 2.25 0.04 -3.08 16 22 O -0.37 -6.19 8.92 -35.08 -0.31 -6.50 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 25 H 0.07 0.98 5.62 -51.93 -0.29 0.68 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.50 7.99 -51.89 -0.41 1.09 16 30 H 0.05 1.10 6.45 -51.86 -0.33 0.76 16 31 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.06 1.26 6.17 -51.98 -0.32 0.94 16 35 H 0.09 1.67 7.87 -51.95 -0.41 1.26 16 36 H 0.09 1.32 5.58 -51.93 -0.29 1.03 16 37 H 0.07 0.98 7.69 -51.93 -0.40 0.58 16 38 H 0.06 0.83 7.72 -51.93 -0.40 0.43 16 LS Contribution 308.22 15.07 4.64 4.64 Total: -1.00 -27.66 308.22 -5.75 -33.42 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.25 Total: -0.89 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.46 Total: -2.00 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.39 Total: -36.12 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.31 Total: -6.50 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 0.11 Total: -8.57 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.66 -5.75 -33.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336323046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.416 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds