Wall clock time and date at job start Tue Mar 31 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54249 * 1 3 3 C 1.53173 * 107.62837 * 2 1 4 4 C 1.52906 * 107.89033 * 242.00877 * 2 1 3 5 5 N 1.46926 * 109.81923 * 193.20577 * 4 2 1 6 6 C 1.46888 * 111.04979 * 184.89542 * 5 4 2 7 7 C 1.50704 * 109.46970 * 302.20492 * 6 5 4 8 8 H 1.07997 * 120.00097 * 4.80839 * 7 6 5 9 9 C 1.37882 * 119.99622 * 184.81378 * 7 6 5 10 10 N 1.31513 * 120.00189 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99551 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47373 * 60.00006 * 11 9 7 13 13 H 1.48506 * 109.47084 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47239 * 299.99266 * 11 9 7 15 15 C 1.47074 * 109.57039 * 61.87629 * 5 4 2 16 16 C 1.53177 * 108.79279 * 296.21707 * 15 5 4 17 17 C 1.52995 * 109.57376 * 287.59905 * 16 15 5 18 18 C 1.54133 * 107.84441 * 170.30322 * 16 15 5 19 19 F 1.39896 * 109.47710 * 299.52457 * 18 16 15 20 20 F 1.39902 * 109.46854 * 59.52814 * 18 16 15 21 21 F 1.39903 * 109.47027 * 179.52197 * 18 16 15 22 22 O 1.41479 * 108.34114 * 120.57277 * 2 1 3 23 23 H 1.09009 * 109.47052 * 299.42747 * 1 2 3 24 24 H 1.08994 * 109.47254 * 59.42240 * 1 2 3 25 25 H 1.08999 * 109.47185 * 179.43231 * 1 2 3 26 26 H 1.09000 * 109.47596 * 178.63145 * 3 2 1 27 27 H 1.09000 * 109.46978 * 298.63012 * 3 2 1 28 28 H 1.09001 * 109.47432 * 58.62616 * 3 2 1 29 29 H 1.09118 * 109.41119 * 313.34571 * 4 2 1 30 30 H 1.09077 * 109.52700 * 72.92019 * 4 2 1 31 31 H 1.09000 * 109.47676 * 62.20418 * 6 5 4 32 32 H 1.08999 * 109.46683 * 182.20957 * 6 5 4 33 33 H 0.97002 * 120.00144 * 179.97438 * 10 9 7 34 34 H 1.08957 * 109.47905 * 176.56574 * 15 5 4 35 35 H 1.08887 * 109.61259 * 56.11789 * 15 5 4 36 36 H 1.08996 * 109.46952 * 183.62375 * 17 16 15 37 37 H 1.08999 * 109.46783 * 303.61772 * 17 16 15 38 38 H 1.08999 * 109.46851 * 63.62168 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5425 0.0000 0.0000 3 6 2.0064 1.4598 0.0000 4 6 2.0122 -0.6829 -1.2849 5 7 3.4459 -0.9903 -1.1903 6 6 3.9518 -1.5417 -2.4542 7 6 3.1704 -2.7802 -2.8104 8 1 2.3278 -3.0797 -2.2050 9 6 3.5316 -3.5308 -3.9092 10 7 4.5575 -3.1658 -4.6466 11 14 2.5626 -5.0655 -4.3510 12 1 1.1483 -4.6988 -4.6162 13 1 3.1481 -5.6880 -5.5656 14 1 2.6210 -6.0296 -3.2231 15 6 3.6773 -1.9233 -0.0772 16 6 3.2895 -1.2331 1.2341 17 6 4.3330 -0.1696 1.5816 18 6 3.3041 -2.2963 2.3498 19 9 2.3781 -3.3009 2.0490 20 9 4.5833 -2.8547 2.4452 21 9 2.9643 -1.6985 3.5682 22 8 1.9877 -0.6831 1.1562 23 1 -0.3634 0.5050 0.8952 24 1 -0.3633 0.5227 -0.8847 25 1 -0.3633 -1.0276 -0.0102 26 1 3.0955 1.4950 0.0245 27 1 1.6471 1.9552 -0.9020 28 1 1.6065 1.9682 0.8774 29 1 1.4514 -1.6076 -1.4300 30 1 1.8369 -0.0216 -2.1344 31 1 3.8383 -0.8005 -3.2454 32 1 5.0058 -1.7964 -2.3434 33 1 4.8118 -3.6941 -5.4194 34 1 4.7313 -2.1977 -0.0463 35 1 3.0685 -2.8154 -0.2156 36 1 4.0905 0.2758 2.5464 37 1 5.3192 -0.6311 1.6321 38 1 4.3328 0.6042 0.8139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336323047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:51 Heat of formation + Delta-G solvation = -196.580091 kcal Electronic energy + Delta-G solvation = -24679.830311 eV Core-core repulsion = 20721.374825 eV Total energy + Delta-G solvation = -3958.455486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.85980 -47.38603 -47.31265 -39.88739 -35.62991 -34.58126 -32.55635 -30.99104 -27.37243 -27.12911 -26.20767 -25.87075 -24.21909 -21.89366 -21.02452 -18.63647 -18.17801 -18.03363 -17.64027 -16.55539 -15.85764 -15.23219 -14.67682 -14.51849 -14.36707 -14.14358 -13.91712 -13.84681 -13.76176 -13.51678 -13.47401 -13.11954 -12.75186 -12.48996 -12.37523 -12.11881 -11.98571 -11.84525 -11.78397 -11.25867 -11.23883 -10.96798 -10.76085 -10.62472 -10.26012 -10.20419 -9.95911 -9.67997 -9.32615 -8.52690 -7.46525 -6.13459 -4.23114 2.67299 3.23882 3.29009 3.31920 3.42448 3.96627 4.26858 4.33466 4.64495 4.82022 4.92402 5.04528 5.17357 5.21169 5.28915 5.42140 5.61054 5.79798 5.83692 5.88538 5.92047 6.00523 6.07905 6.21623 6.25409 6.33487 6.38539 6.51129 6.61445 7.01537 7.38129 7.60475 7.72325 7.81307 7.95747 8.13777 8.85154 9.44847 10.92198 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.006950 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.012041 B = 4027.888478 C = 4625.718311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.131 3.869 3 C -0.165 4.165 4 C 0.030 3.970 5 N -0.524 5.524 6 C 0.188 3.812 7 C -0.558 4.558 8 H 0.058 0.942 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.030 3.970 16 C 0.104 3.896 17 C -0.171 4.171 18 C 0.457 3.543 19 F -0.177 7.177 20 F -0.176 7.176 21 F -0.181 7.181 22 O -0.370 6.370 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 6.521 11.429 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.092 3.908 3 C -0.222 4.222 4 C -0.098 4.098 5 N -0.248 5.248 6 C 0.063 3.937 7 C -0.596 4.596 8 H 0.076 0.924 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.099 4.099 16 C 0.062 3.938 17 C -0.228 4.228 18 C 0.402 3.598 19 F -0.158 7.158 20 F -0.158 7.158 21 F -0.162 7.162 22 O -0.289 6.289 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.300 6.884 11.498 13.802 hybrid contribution -0.751 -1.945 -0.586 2.166 sum -4.050 4.938 10.912 12.644 Atomic orbital electron populations 1.22124 0.92773 1.02765 1.02152 1.21572 0.93645 0.91274 0.84332 1.22411 1.02857 0.95351 1.01565 1.22694 0.90868 1.00300 0.95978 1.63028 1.13905 1.41403 1.06453 1.19812 0.96004 0.93591 0.84326 1.21676 1.15292 1.10525 1.12140 0.92436 1.24938 0.94884 0.97619 0.96059 1.69921 1.26237 1.39297 1.17158 0.86699 0.80335 0.83325 0.77988 1.20170 1.21092 1.20134 1.22640 1.02906 0.95146 0.89199 1.22323 0.86330 0.91851 0.93319 1.22419 0.97672 0.99583 1.03132 1.20822 0.73391 0.82445 0.83104 1.93178 1.66509 1.63188 1.92966 1.93169 1.39728 1.86451 1.96411 1.93147 1.92190 1.83435 1.47461 1.86583 1.28361 1.73272 1.40716 0.92049 0.90853 0.92011 0.91204 0.91665 0.92768 0.92974 0.89987 0.94773 0.94387 0.92596 0.89246 0.92164 0.91656 0.90656 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.61 37.81 0.33 -1.51 16 2 C 0.13 2.01 1.13 -89.92 -0.10 1.91 16 3 C -0.16 -2.18 8.45 37.25 0.31 -1.86 16 4 C 0.03 0.56 3.79 -3.86 -0.01 0.54 16 5 N -0.52 -10.47 4.75 -235.84 -1.12 -11.59 16 6 C 0.19 4.55 5.16 -4.98 -0.03 4.53 16 7 C -0.56 -14.72 7.73 -34.44 -0.27 -14.99 16 8 H 0.06 1.52 5.72 -52.49 -0.30 1.22 16 9 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 10 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.03 0.58 3.59 -3.64 -0.01 0.57 16 16 C 0.10 1.71 0.62 -89.94 -0.06 1.65 16 17 C -0.17 -2.39 8.17 37.15 0.30 -2.09 16 18 C 0.46 7.45 2.31 37.75 0.09 7.54 16 19 F -0.18 -3.14 16.51 2.25 0.04 -3.10 16 20 F -0.18 -2.78 16.25 2.25 0.04 -2.74 16 21 F -0.18 -2.83 16.68 2.25 0.04 -2.79 16 22 O -0.37 -6.19 8.92 -35.07 -0.31 -6.50 16 23 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.97 5.62 -51.93 -0.29 0.68 16 27 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.07 6.30 -51.86 -0.33 0.74 16 30 H 0.08 1.47 7.98 -51.89 -0.41 1.06 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.09 1.70 7.87 -51.95 -0.41 1.29 16 35 H 0.06 1.29 6.36 -51.99 -0.33 0.96 16 36 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 37 H 0.07 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.09 1.32 5.58 -51.93 -0.29 1.03 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -27.67 308.29 -5.75 -33.43 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.25 Total: -0.87 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 0.46 Total: -1.95 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.38 Total: -36.17 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.31 Total: -6.50 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.11 Total: -8.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.67 -5.75 -33.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336323047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.152 kcal (2) G-P(sol) polarization free energy of solvation -27.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds