Wall clock time and date at job start Tue Mar 31 2020 07:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47077 * 2 1 4 4 C 1.53002 * 109.47057 * 239.99801 * 2 1 3 5 5 C 1.53001 * 109.47259 * 300.00490 * 4 2 1 6 6 C 1.53006 * 109.46983 * 299.99853 * 5 4 2 7 7 C 1.53002 * 109.47003 * 59.99990 * 6 5 4 8 8 H 1.08994 * 109.47118 * 60.00058 * 7 6 5 9 9 S 1.81002 * 109.46956 * 180.02562 * 7 6 5 10 10 C 1.76208 * 99.99668 * 294.99916 * 9 7 6 11 11 N 1.32380 * 126.25789 * 359.97438 * 10 9 7 12 12 N 1.28515 * 110.20292 * 179.97438 * 11 10 9 13 13 C 1.33100 * 109.74774 * 359.97438 * 12 11 10 14 14 C 1.39773 * 126.56945 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00007 * 189.15945 * 14 13 12 16 16 C 1.40081 * 119.99754 * 9.15831 * 14 13 12 17 17 N 1.30807 * 119.99916 * 20.13980 * 16 14 13 18 18 Si 1.86802 * 119.99854 * 200.14239 * 16 14 13 19 19 H 1.48502 * 109.47247 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46788 * 240.00145 * 18 16 14 21 21 H 1.48495 * 109.47333 * 120.00206 * 18 16 14 22 22 N 1.36668 * 126.25574 * 180.26216 * 10 9 7 23 23 C 1.46500 * 127.15310 * 0.04135 * 22 10 9 24 24 C 1.52998 * 109.46822 * 120.00273 * 2 1 3 25 25 H 1.08997 * 109.46850 * 300.00001 * 1 2 3 26 26 H 1.09007 * 109.46790 * 59.99749 * 1 2 3 27 27 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46872 * 60.00068 * 4 2 1 29 29 H 1.08994 * 109.47118 * 180.02562 * 4 2 1 30 30 H 1.08994 * 109.47233 * 59.99853 * 5 4 2 31 31 H 1.09000 * 109.47321 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.46754 * 300.00224 * 6 5 4 33 33 H 1.08996 * 109.47312 * 180.02562 * 6 5 4 34 34 H 0.96997 * 120.00318 * 5.80515 * 17 16 14 35 35 H 1.09000 * 109.47289 * 270.14154 * 23 22 10 36 36 H 1.09001 * 109.47635 * 30.14260 * 23 22 10 37 37 H 1.09004 * 109.47279 * 150.14402 * 23 22 10 38 38 H 1.08997 * 109.47184 * 299.99521 * 24 2 1 39 39 H 1.09007 * 109.46988 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2493 8 1 0.4399 -2.1637 1.2492 9 16 2.1338 -3.0166 2.7271 10 6 1.2978 -4.5581 2.5539 11 7 0.4750 -4.8966 1.5736 12 7 0.0397 -6.0925 1.7526 13 6 0.5613 -6.5987 2.8677 14 6 0.3254 -7.8718 3.3941 15 1 0.6855 -8.1235 4.3807 16 6 -0.3782 -8.8213 2.6420 17 7 -0.4726 -8.6883 1.3441 18 14 -1.1818 -10.2775 3.4925 19 1 -0.9299 -10.1980 4.9539 20 1 -0.6087 -11.5398 2.9599 21 1 -2.6449 -10.2527 3.2399 22 7 1.3759 -5.6206 3.4098 23 6 2.1619 -5.7073 4.6431 24 6 2.0399 -0.7213 1.2492 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6766 -0.2075 -2.1392 29 1 3.1299 -0.7217 -1.2490 30 1 0.4400 -2.1637 -1.2493 31 1 1.8936 -2.6778 -2.1390 32 1 3.1299 -2.8851 0.0000 33 1 1.6769 -3.9128 -0.0002 34 1 0.0136 -7.9808 0.8925 35 1 3.1538 -6.0976 4.4152 36 1 2.2546 -4.7154 5.0855 37 1 1.6621 -6.3735 5.3464 38 1 1.6767 -0.2075 2.1392 39 1 3.1300 -0.7209 1.2495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336347512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:52 Heat of formation + Delta-G solvation = 32.734593 kcal Electronic energy + Delta-G solvation = -20188.488558 eV Core-core repulsion = 17256.879266 eV Total energy + Delta-G solvation = -2931.609293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69222 -38.88112 -33.91218 -33.48591 -31.88133 -30.76491 -29.02351 -26.81416 -26.53576 -25.35523 -22.63883 -22.03191 -20.91328 -20.58741 -18.51586 -17.81469 -16.76854 -15.50855 -15.02619 -14.91904 -14.62354 -14.32946 -14.09634 -13.80280 -13.57826 -13.04293 -12.78796 -12.45973 -12.43241 -12.08822 -11.90671 -11.85228 -11.42350 -11.19503 -11.12496 -10.98600 -10.78627 -10.43105 -10.29519 -10.17346 -9.89416 -9.75953 -9.63221 -9.37895 -8.87635 -8.73251 -8.46984 -7.12957 -6.93348 -4.65013 2.03694 2.78787 3.01403 3.17258 3.34751 3.37060 3.95675 4.18899 4.27712 4.70875 4.74357 4.89792 5.16289 5.22148 5.26529 5.43996 5.46842 5.48166 5.59025 5.65565 5.72089 5.81786 5.84816 5.91430 5.98176 6.01822 6.08929 6.19813 6.24987 6.31060 6.40509 6.59140 6.63584 6.70108 6.91160 7.33445 7.67222 7.78496 8.11799 8.60877 8.84804 10.20925 10.40681 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029359 B = 0.004521 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.467305 B = 6192.101423 C = 6777.268963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.052 4.052 8 H 0.098 0.902 9 S -0.068 6.068 10 C 0.060 3.940 11 N -0.272 5.272 12 N -0.403 5.403 13 C 0.340 3.660 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.044 3.956 17 N -0.772 5.772 18 Si 1.082 2.918 19 H -0.279 1.279 20 H -0.278 1.278 21 H -0.274 1.274 22 N -0.517 5.517 23 C 0.104 3.896 24 C -0.096 4.096 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.317 0.683 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 12.066 0.497 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.181 4.181 8 H 0.116 0.884 9 S 0.162 5.838 10 C -0.313 4.313 11 N -0.117 5.117 12 N -0.252 5.252 13 C 0.098 3.902 14 C -0.547 4.547 15 H 0.099 0.901 16 C -0.184 4.184 17 N -0.397 5.397 18 Si 0.906 3.094 19 H -0.204 1.204 20 H -0.203 1.203 21 H -0.199 1.199 22 N -0.219 5.219 23 C -0.041 4.041 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.411 11.274 -0.218 12.108 hybrid contribution 0.946 0.757 0.728 1.413 sum 5.356 12.031 0.510 13.179 Atomic orbital electron populations 1.21982 0.95195 1.02748 1.01282 1.21049 0.96119 0.98593 0.94502 0.91151 1.21602 1.00394 0.96168 0.97070 1.21558 1.01343 0.94810 0.97763 1.21867 1.00170 1.01240 0.92065 1.23126 1.04116 0.96104 0.94794 0.88367 1.84413 1.60032 1.05293 1.34075 1.25286 1.12562 0.96032 0.97394 1.74261 1.08752 1.09380 1.19271 1.74923 1.29403 1.02848 1.18068 1.21674 0.87971 0.90528 0.90001 1.19271 1.36839 0.94113 1.04490 0.90102 1.26880 0.94722 1.01773 0.95006 1.70127 1.29221 1.31020 1.09364 0.83395 0.77171 0.73766 0.75071 1.20377 1.20328 1.19937 1.45918 1.41212 1.13140 1.21672 1.21474 0.95175 1.02059 0.85411 1.21426 1.00912 0.92937 0.98283 0.92848 0.92873 0.91516 0.92220 0.92126 0.91462 0.92096 0.92130 0.89051 0.86616 0.92508 0.91528 0.90415 0.91351 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.50 37.16 0.32 -1.40 16 2 C -0.08 -0.88 3.20 -90.62 -0.29 -1.17 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.26 5.45 -26.73 -0.15 -1.40 16 5 C -0.12 -1.56 5.65 -26.73 -0.15 -1.71 16 6 C -0.11 -1.87 5.02 -26.73 -0.13 -2.00 16 7 C -0.05 -0.83 1.89 -26.73 -0.05 -0.88 16 8 H 0.10 1.74 6.43 -51.92 -0.33 1.41 16 9 S -0.07 -1.25 21.24 -107.50 -2.28 -3.53 16 10 C 0.06 1.44 7.77 -87.29 -0.68 0.76 16 11 N -0.27 -7.26 9.74 30.89 0.30 -6.96 16 12 N -0.40 -11.84 9.81 31.26 0.31 -11.53 16 13 C 0.34 9.49 7.28 -154.81 -1.13 8.36 16 14 C -0.51 -13.59 9.00 -38.32 -0.34 -13.94 16 15 H 0.08 2.00 7.33 -52.49 -0.38 1.62 16 16 C 0.04 1.16 5.41 -17.30 -0.09 1.06 16 17 N -0.77 -21.99 13.29 55.56 0.74 -21.26 16 18 Si 1.08 21.87 29.98 -169.99 -5.10 16.77 16 19 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 N -0.52 -12.60 3.26 -123.18 -0.40 -13.00 16 23 C 0.10 1.94 10.89 59.85 0.65 2.59 16 24 C -0.10 -1.18 4.73 -26.73 -0.13 -1.31 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.87 4.81 -51.93 -0.25 0.62 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.88 5.89 -51.93 -0.31 1.57 16 34 H 0.32 9.57 6.27 -40.82 -0.26 9.31 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 37 H 0.08 1.38 7.47 -51.93 -0.39 0.99 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -31.29 317.32 -9.51 -40.80 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.68 Total: 4.95 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.17 Total: -11.02 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.94 Total: -52.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.10 Total: 16.77 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.28 Total: -3.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.29 -9.51 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336347512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.534 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds