Wall clock time and date at job start Tue Mar 31 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47787 * 2 1 4 4 C 1.53002 * 109.47160 * 120.00121 * 2 1 3 5 5 C 1.53004 * 109.46796 * 59.99736 * 4 2 1 6 6 C 1.52996 * 109.47238 * 60.00572 * 5 4 2 7 7 C 1.53002 * 109.47084 * 299.99648 * 6 5 4 8 8 H 1.09002 * 109.47010 * 300.00571 * 7 6 5 9 9 S 1.80993 * 109.47477 * 180.02562 * 7 6 5 10 10 C 1.76201 * 100.00012 * 65.00029 * 9 7 6 11 11 N 1.32386 * 126.25759 * 359.68607 * 10 9 7 12 12 N 1.28520 * 110.20322 * 179.87846 * 11 10 9 13 13 C 1.33100 * 109.74160 * 0.39365 * 12 11 10 14 14 C 1.39781 * 126.55724 * 179.72855 * 13 12 11 15 15 H 1.07999 * 119.99602 * 174.35348 * 14 13 12 16 16 C 1.40084 * 120.00238 * 354.34677 * 14 13 12 17 17 N 1.30809 * 119.99807 * 6.04544 * 16 14 13 18 18 Si 1.86799 * 119.99845 * 186.04486 * 16 14 13 19 19 H 1.48495 * 109.47278 * 94.98197 * 18 16 14 20 20 H 1.48497 * 109.46986 * 214.98438 * 18 16 14 21 21 H 1.48503 * 109.47247 * 334.98176 * 18 16 14 22 22 N 1.36675 * 126.26080 * 180.02562 * 10 9 7 23 23 C 1.46495 * 127.14871 * 359.92555 * 22 10 9 24 24 C 1.52999 * 109.47120 * 240.00132 * 2 1 3 25 25 H 1.08998 * 109.47338 * 300.00106 * 1 2 3 26 26 H 1.09001 * 109.46685 * 59.99808 * 1 2 3 27 27 H 1.08994 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47488 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.46810 * 300.00097 * 4 2 1 30 30 H 1.09001 * 109.47092 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47092 * 300.00230 * 5 4 2 32 32 H 1.09003 * 109.47403 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47909 * 59.99364 * 6 5 4 34 34 H 0.96999 * 119.99769 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.47389 * 89.99937 * 23 22 10 36 36 H 1.09003 * 109.47244 * 209.99815 * 23 22 10 37 37 H 1.09004 * 109.47706 * 330.00426 * 23 22 10 38 38 H 1.08991 * 109.47558 * 59.99950 * 24 2 1 39 39 H 1.09002 * 109.47486 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5300 -2.1638 -1.2493 8 1 0.4399 -2.1637 -1.2493 9 16 2.1326 -3.0174 -2.7271 10 6 1.2957 -4.5582 -2.5532 11 7 0.4780 -4.8983 -1.5692 12 7 0.0378 -6.0921 -1.7505 13 6 0.5571 -6.5980 -2.8667 14 6 0.3202 -7.8714 -3.3925 15 1 0.7267 -8.1419 -4.3558 16 6 -0.4442 -8.7965 -2.6699 17 7 -1.0345 -8.4327 -1.5608 18 14 -0.6204 -10.5496 -3.2903 19 1 0.3958 -11.4113 -2.6346 20 1 -1.9794 -11.0543 -2.9685 21 1 -0.4178 -10.5769 -4.7612 22 7 1.3770 -5.6231 -3.4061 23 6 2.1673 -5.7129 -4.6363 24 6 2.0400 -0.7212 -1.2492 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 -0.7217 1.2491 29 1 1.6766 -0.2075 2.1392 30 1 1.8928 -2.6776 2.1394 31 1 0.4399 -2.1637 1.2491 32 1 1.6761 -3.9126 -0.0003 33 1 3.1299 -2.8851 -0.0001 34 1 -1.5641 -9.0732 -1.0606 35 1 3.1576 -6.1047 -4.4042 36 1 1.6689 -6.3790 -5.3406 37 1 2.2636 -4.7217 -5.0796 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7216 -1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336347513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:56 Heat of formation + Delta-G solvation = 41.746689 kcal Electronic energy + Delta-G solvation = -20139.252841 eV Core-core repulsion = 17208.034342 eV Total energy + Delta-G solvation = -2931.218499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48362 -38.81611 -33.68739 -33.30604 -31.81315 -30.69743 -29.26998 -26.77799 -26.41154 -25.47887 -22.55010 -21.96021 -20.79006 -20.37995 -18.44682 -17.33367 -16.57954 -15.54139 -15.12297 -14.85493 -14.67636 -14.39944 -14.04799 -13.74221 -13.32776 -12.96089 -12.68485 -12.33371 -12.29432 -12.14699 -11.83492 -11.44623 -11.35420 -11.28268 -11.09726 -10.92753 -10.90929 -10.68556 -10.36467 -10.10797 -9.94228 -9.64403 -9.52627 -9.49913 -8.66251 -8.38631 -8.34010 -6.79311 -6.64180 -4.55112 2.14920 2.89915 2.92452 3.06895 3.10543 3.38573 3.88384 4.25952 4.43976 4.77199 4.80570 4.95426 5.29124 5.33108 5.33124 5.49989 5.53266 5.56845 5.65829 5.71357 5.78455 5.90173 5.90847 5.97394 6.05618 6.07741 6.14340 6.26889 6.30859 6.37266 6.46856 6.70782 6.74590 6.84879 6.96741 7.26750 7.51495 7.92500 8.19777 8.71938 8.88114 10.28732 10.66797 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.004497 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.438664 B = 6225.099874 C = 6830.712724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.051 4.051 8 H 0.098 0.902 9 S -0.074 6.074 10 C 0.053 3.947 11 N -0.283 5.283 12 N -0.334 5.334 13 C 0.346 3.654 14 C -0.449 4.449 15 H 0.083 0.917 16 C 0.080 3.920 17 N -0.737 5.737 18 Si 0.920 3.080 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.263 1.263 22 N -0.516 5.516 23 C 0.102 3.898 24 C -0.096 4.096 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.279 0.721 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 11.186 0.326 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.180 4.180 8 H 0.116 0.884 9 S 0.157 5.843 10 C -0.318 4.318 11 N -0.129 5.129 12 N -0.182 5.182 13 C 0.101 3.899 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.361 5.361 18 Si 0.743 3.257 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.187 1.187 22 N -0.218 5.218 23 C -0.043 4.043 24 C -0.136 4.136 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.509 11.619 0.905 12.891 hybrid contribution -0.150 -1.511 -0.703 1.673 sum 5.358 10.108 0.202 11.442 Atomic orbital electron populations 1.21980 0.95196 1.02804 1.01223 1.21046 0.96123 0.98542 0.94552 0.91241 1.21602 1.00353 0.96236 0.97035 1.21555 1.01366 0.94737 0.97806 1.21870 1.00072 1.01394 0.92008 1.23105 1.04129 0.95967 0.94833 0.88360 1.84346 1.60252 1.05724 1.34011 1.25290 1.12896 0.95651 0.98003 1.74467 1.08875 1.10426 1.19094 1.75466 1.25716 1.00809 1.16175 1.21608 0.87819 0.90254 0.90239 1.18097 1.31911 0.93682 1.05256 0.89859 1.25777 0.93812 1.00629 0.94368 1.70016 1.19649 1.35316 1.11135 0.86126 0.78412 0.81160 0.79956 1.19456 1.19999 1.18651 1.46060 1.41023 1.13048 1.21648 1.21476 0.95106 1.02010 0.85690 1.21427 1.00860 0.93059 0.98206 0.92929 0.92875 0.91434 0.92174 0.92296 0.92167 0.91448 0.88856 0.92230 0.91047 0.92570 0.90460 0.91604 0.91390 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.50 37.16 0.32 -1.43 16 2 C -0.08 -0.90 3.19 -90.62 -0.29 -1.19 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.28 5.45 -26.73 -0.15 -1.43 16 5 C -0.12 -1.59 5.65 -26.73 -0.15 -1.74 16 6 C -0.11 -1.90 5.02 -26.73 -0.13 -2.03 16 7 C -0.05 -0.82 1.89 -26.73 -0.05 -0.87 16 8 H 0.10 1.77 6.43 -51.91 -0.33 1.44 16 9 S -0.07 -1.37 21.24 -107.50 -2.28 -3.65 16 10 C 0.05 1.29 7.78 -87.28 -0.68 0.61 16 11 N -0.28 -7.67 9.73 30.89 0.30 -7.37 16 12 N -0.33 -10.04 10.50 31.26 0.33 -9.71 16 13 C 0.35 9.72 7.53 -154.82 -1.17 8.55 16 14 C -0.45 -11.99 9.05 -38.31 -0.35 -12.34 16 15 H 0.08 2.02 7.27 -52.49 -0.38 1.64 16 16 C 0.08 2.04 5.49 -17.30 -0.09 1.95 16 17 N -0.74 -20.33 11.96 55.56 0.66 -19.67 16 18 Si 0.92 18.63 29.57 -169.99 -5.03 13.60 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 N -0.52 -12.60 3.26 -123.18 -0.40 -13.00 16 23 C 0.10 1.91 10.89 59.84 0.65 2.56 16 24 C -0.10 -1.21 4.74 -26.73 -0.13 -1.33 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.89 4.81 -51.93 -0.25 0.65 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 32 H 0.09 1.96 5.88 -51.93 -0.31 1.65 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 37 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -31.55 318.59 -9.59 -41.15 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.76 Total: 2.55 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.22 Total: -8.70 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.89 Total: -49.75 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.28 Total: -3.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.55 -9.59 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336347513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.894 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds