Wall clock time and date at job start Tue Mar 31 2020 07:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47787 * 2 1 4 4 C 1.53002 * 109.47160 * 120.00121 * 2 1 3 5 5 C 1.53004 * 109.46796 * 59.99736 * 4 2 1 6 6 C 1.52996 * 109.47238 * 60.00572 * 5 4 2 7 7 C 1.53002 * 109.47084 * 299.99648 * 6 5 4 8 8 H 1.09002 * 109.47010 * 300.00571 * 7 6 5 9 9 S 1.80993 * 109.47477 * 180.02562 * 7 6 5 10 10 C 1.76201 * 100.00012 * 65.00029 * 9 7 6 11 11 N 1.32386 * 126.25759 * 359.68607 * 10 9 7 12 12 N 1.28520 * 110.20322 * 179.87846 * 11 10 9 13 13 C 1.33100 * 109.74160 * 0.39365 * 12 11 10 14 14 C 1.39781 * 126.55724 * 179.72855 * 13 12 11 15 15 H 1.07999 * 119.99602 * 174.35348 * 14 13 12 16 16 C 1.40084 * 120.00238 * 354.34677 * 14 13 12 17 17 N 1.30809 * 119.99807 * 6.04544 * 16 14 13 18 18 Si 1.86799 * 119.99845 * 186.04486 * 16 14 13 19 19 H 1.48495 * 109.47278 * 94.98197 * 18 16 14 20 20 H 1.48497 * 109.46986 * 214.98438 * 18 16 14 21 21 H 1.48503 * 109.47247 * 334.98176 * 18 16 14 22 22 N 1.36675 * 126.26080 * 180.02562 * 10 9 7 23 23 C 1.46495 * 127.14871 * 359.92555 * 22 10 9 24 24 C 1.52999 * 109.47120 * 240.00132 * 2 1 3 25 25 H 1.08998 * 109.47338 * 300.00106 * 1 2 3 26 26 H 1.09001 * 109.46685 * 59.99808 * 1 2 3 27 27 H 1.08994 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47488 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.46810 * 300.00097 * 4 2 1 30 30 H 1.09001 * 109.47092 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47092 * 300.00230 * 5 4 2 32 32 H 1.09003 * 109.47403 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47909 * 59.99364 * 6 5 4 34 34 H 0.96999 * 119.99769 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.47389 * 89.99937 * 23 22 10 36 36 H 1.09003 * 109.47244 * 209.99815 * 23 22 10 37 37 H 1.09004 * 109.47706 * 330.00426 * 23 22 10 38 38 H 1.08991 * 109.47558 * 59.99950 * 24 2 1 39 39 H 1.09002 * 109.47486 * 180.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5300 -2.1638 -1.2493 8 1 0.4399 -2.1637 -1.2493 9 16 2.1326 -3.0174 -2.7271 10 6 1.2957 -4.5582 -2.5532 11 7 0.4780 -4.8983 -1.5692 12 7 0.0378 -6.0921 -1.7505 13 6 0.5571 -6.5980 -2.8667 14 6 0.3202 -7.8714 -3.3925 15 1 0.7267 -8.1419 -4.3558 16 6 -0.4442 -8.7965 -2.6699 17 7 -1.0345 -8.4327 -1.5608 18 14 -0.6204 -10.5496 -3.2903 19 1 0.3958 -11.4113 -2.6346 20 1 -1.9794 -11.0543 -2.9685 21 1 -0.4178 -10.5769 -4.7612 22 7 1.3770 -5.6231 -3.4061 23 6 2.1673 -5.7129 -4.6363 24 6 2.0400 -0.7212 -1.2492 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 -0.7217 1.2491 29 1 1.6766 -0.2075 2.1392 30 1 1.8928 -2.6776 2.1394 31 1 0.4399 -2.1637 1.2491 32 1 1.6761 -3.9126 -0.0003 33 1 3.1299 -2.8851 -0.0001 34 1 -1.5641 -9.0732 -1.0606 35 1 3.1576 -6.1047 -4.4042 36 1 1.6689 -6.3790 -5.3406 37 1 2.2636 -4.7217 -5.0796 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7216 -1.2491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336347513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:55 Heat of formation + Delta-G solvation = 24.564329 kcal Electronic energy + Delta-G solvation = -20139.997924 eV Core-core repulsion = 17208.034342 eV Total energy + Delta-G solvation = -2931.963582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44063 -39.88732 -35.62661 -35.15035 -32.95863 -31.80666 -31.23873 -28.28709 -27.70880 -27.29628 -23.73978 -23.12930 -22.75182 -22.21446 -19.51907 -19.22859 -18.07275 -17.32383 -16.57740 -16.51714 -16.15374 -15.78436 -15.41944 -15.07308 -14.71361 -14.16836 -14.00365 -13.84752 -13.78999 -13.46086 -13.09630 -12.99785 -12.95097 -12.74811 -12.51193 -12.19445 -12.00416 -11.93975 -11.86734 -11.62931 -11.44886 -11.17605 -10.90810 -10.85887 -10.54223 -10.29935 -10.23496 -8.55419 -8.51648 -6.57684 0.53410 1.20255 1.33277 1.40613 1.57715 1.61774 2.18124 2.45586 2.52333 3.33208 3.69417 3.72273 3.99730 4.06934 4.18991 4.25721 4.43094 4.43662 4.45332 4.49082 4.59484 4.69901 4.82261 4.88465 4.90936 4.95279 4.99813 5.09984 5.14493 5.16260 5.30047 5.35355 5.37884 5.41153 5.52080 5.57915 5.62788 6.06467 6.22104 6.75905 6.93108 8.41076 8.66760 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.004497 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.438664 B = 6225.099874 C = 6830.712724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.077 4.077 3 H 0.101 0.899 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.048 4.048 8 H 0.075 0.925 9 S -0.034 6.034 10 C 0.059 3.941 11 N -0.320 5.320 12 N -0.390 5.390 13 C 0.316 3.684 14 C -0.474 4.474 15 H 0.102 0.898 16 C 0.030 3.970 17 N -0.789 5.789 18 Si 1.006 2.994 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.247 1.247 22 N -0.523 5.523 23 C 0.095 3.905 24 C -0.090 4.090 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.284 0.716 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.340 12.625 -0.700 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.097 4.097 3 H 0.119 0.881 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.178 4.178 8 H 0.093 0.907 9 S 0.196 5.804 10 C -0.314 4.314 11 N -0.164 5.164 12 N -0.236 5.236 13 C 0.069 3.931 14 C -0.514 4.514 15 H 0.120 0.880 16 C -0.191 4.191 17 N -0.414 5.414 18 Si 0.825 3.175 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.170 1.170 22 N -0.225 5.225 23 C -0.048 4.048 24 C -0.130 4.130 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.144 13.075 -0.136 14.900 hybrid contribution -0.582 -1.785 -0.376 1.915 sum 6.561 11.290 -0.512 13.068 Atomic orbital electron populations 1.21977 0.95811 1.01212 1.02277 1.21085 0.95546 0.99808 0.93283 0.88050 1.21585 1.01075 0.93844 0.98085 1.21524 1.00505 0.96843 0.96321 1.21747 1.00326 0.99066 0.93838 1.23258 1.02883 0.98153 0.93501 0.90657 1.84101 1.58896 1.01994 1.35361 1.26370 1.10981 0.97522 0.96547 1.74384 1.10984 1.10134 1.20887 1.75328 1.27866 1.02303 1.18126 1.22036 0.88907 0.91555 0.90610 1.18612 1.32751 0.93766 1.06316 0.88045 1.26972 0.92517 1.05520 0.94042 1.70164 1.20845 1.37413 1.12985 0.84846 0.78469 0.74213 0.79955 1.18827 1.19458 1.16964 1.46405 1.40859 1.12266 1.22956 1.21820 0.95196 1.03922 0.83884 1.21490 1.01656 0.90046 0.99798 0.91454 0.92321 0.94337 0.90877 0.90367 0.91963 0.92908 0.93857 0.91386 0.90594 0.90876 0.89396 0.89242 0.90333 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.50 71.98 0.61 -2.63 16 2 C -0.08 -1.44 3.19 -10.79 -0.03 -1.47 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.11 -2.11 5.45 30.60 0.17 -1.94 16 5 C -0.11 -3.08 5.65 30.59 0.17 -2.91 16 6 C -0.11 -3.73 5.02 30.59 0.15 -3.57 16 7 C -0.05 -1.55 1.89 30.60 0.06 -1.50 16 8 H 0.08 2.81 6.43 -2.39 -0.02 2.79 16 9 S -0.03 -1.21 21.24 -56.49 -1.20 -2.41 16 10 C 0.06 2.94 7.78 179.18 1.39 4.33 16 11 N -0.32 -18.34 9.73 -56.17 -0.55 -18.88 16 12 N -0.39 -24.80 10.50 -55.02 -0.58 -25.37 16 13 C 0.32 18.45 7.53 133.24 1.00 19.45 16 14 C -0.47 -25.89 9.05 23.09 0.21 -25.68 16 15 H 0.10 4.92 7.27 -2.91 -0.02 4.90 16 16 C 0.03 1.58 5.49 85.29 0.47 2.04 16 17 N -0.79 -45.50 11.96 21.85 0.26 -45.24 16 18 Si 1.01 38.40 29.57 68.60 2.03 40.42 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 22 N -0.52 -25.99 3.26 -543.63 -1.77 -27.77 16 23 C 0.09 3.42 10.89 127.77 1.39 4.81 16 24 C -0.09 -2.02 4.74 30.60 0.14 -1.87 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 1.03 4.81 -2.39 -0.01 1.02 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.59 6.43 -2.39 -0.02 1.57 16 32 H 0.04 1.92 5.88 -2.39 -0.01 1.90 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.28 14.76 8.30 -92.71 -0.77 13.99 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.09 2.97 7.48 -2.39 -0.02 2.95 16 37 H 0.09 2.78 7.85 -2.39 -0.02 2.76 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.99 318.59 4.98 -69.01 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.04 Total: 21.19 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.74 Total: -10.95 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -2.63 Total: -117.26 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.42 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.20 Total: -2.41 kcal Total: -73.99 4.98 -69.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336347513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.577 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds