Wall clock time and date at job start Tue Mar 31 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.46864 * 2 1 4 4 C 1.52999 * 109.47111 * 240.00189 * 2 1 3 5 5 C 1.53001 * 109.47111 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47313 * 59.99486 * 5 4 2 7 7 C 1.52999 * 109.47451 * 300.00305 * 6 5 4 8 8 H 1.09003 * 109.46744 * 299.99847 * 7 6 5 9 9 S 1.80993 * 109.47061 * 179.97438 * 7 6 5 10 10 C 1.76197 * 100.00216 * 65.00059 * 9 7 6 11 11 N 1.32391 * 126.25959 * 0.02562 * 10 9 7 12 12 N 1.28507 * 110.20439 * 179.97438 * 11 10 9 13 13 C 1.33097 * 109.74931 * 359.97438 * 12 11 10 14 14 C 1.39773 * 126.56796 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00594 * 186.07845 * 14 13 12 16 16 C 1.40079 * 119.99843 * 6.07261 * 14 13 12 17 17 N 1.30814 * 119.99884 * 175.40979 * 16 14 13 18 18 Si 1.86798 * 120.00115 * 355.14257 * 16 14 13 19 19 H 1.48500 * 109.47512 * 59.99589 * 18 16 14 20 20 H 1.48498 * 109.47314 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46873 * 299.99589 * 18 16 14 22 22 N 1.36668 * 126.25850 * 180.27024 * 10 9 7 23 23 C 1.46501 * 127.15546 * 0.04262 * 22 10 9 24 24 C 1.53001 * 109.47313 * 119.99676 * 2 1 3 25 25 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46735 * 299.99730 * 1 2 3 27 27 H 1.08995 * 109.47000 * 59.99664 * 1 2 3 28 28 H 1.09002 * 109.46938 * 59.99800 * 4 2 1 29 29 H 1.09003 * 109.46744 * 299.99724 * 4 2 1 30 30 H 1.09010 * 109.46864 * 299.99811 * 5 4 2 31 31 H 1.09002 * 109.47241 * 179.97438 * 5 4 2 32 32 H 1.08997 * 109.46721 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.46730 * 60.00271 * 6 5 4 34 34 H 0.97000 * 120.00285 * 4.82241 * 17 16 14 35 35 H 1.09006 * 109.46857 * 270.15379 * 23 22 10 36 36 H 1.08995 * 109.46747 * 30.14552 * 23 22 10 37 37 H 1.08999 * 109.47302 * 150.15320 * 23 22 10 38 38 H 1.08996 * 109.46730 * 60.00271 * 24 2 1 39 39 H 1.09002 * 109.47329 * 300.00389 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4414 -0.0003 7 6 3.5706 -0.7202 1.2489 8 1 3.9336 0.3076 1.2487 9 16 4.1740 -1.5734 2.7267 10 6 5.9057 -1.2985 2.5531 11 7 6.4989 -0.6356 1.5726 12 7 7.7713 -0.6224 1.7520 13 6 8.0750 -1.2811 2.8680 14 6 9.3541 -1.4820 3.3945 15 1 9.4894 -2.1175 4.2572 16 6 10.4607 -0.8591 2.8032 17 7 11.6444 -0.9740 3.3479 18 14 10.2473 0.1294 1.2326 19 1 9.2953 1.2432 1.4740 20 1 11.5601 0.6829 0.8138 21 1 9.7168 -0.7518 0.1614 22 7 6.8826 -1.7346 3.4036 23 6 6.7042 -2.5169 4.6293 24 6 2.0401 -0.7212 1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6766 -0.2073 -2.1392 29 1 1.6767 -1.7489 -1.2492 30 1 3.9330 0.3073 -1.2498 31 1 3.9334 -1.2348 -2.1394 32 1 5.1706 -1.4406 -0.0004 33 1 3.7177 -2.4692 -0.0001 34 1 11.7692 -1.5468 4.1208 35 1 6.5730 -1.8420 5.4752 36 1 5.8232 -3.1511 4.5305 37 1 7.5835 -3.1396 4.7942 38 1 1.6768 -1.7488 1.2493 39 1 1.6767 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336347515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:03 Heat of formation + Delta-G solvation = 24.378148 kcal Electronic energy + Delta-G solvation = -20052.841986 eV Core-core repulsion = 17120.870331 eV Total energy + Delta-G solvation = -2931.971655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93259 -38.62687 -33.95259 -33.58865 -32.61481 -30.80904 -29.98427 -26.80201 -26.42684 -25.28042 -22.70063 -21.42130 -21.33917 -20.21319 -19.68230 -18.19654 -16.74296 -15.50444 -15.15576 -15.03789 -14.62883 -14.41268 -14.12646 -13.75623 -13.47619 -13.25660 -12.89935 -12.63334 -12.47916 -12.37774 -11.97010 -11.80332 -11.69578 -11.38574 -11.09586 -10.92111 -10.90474 -10.71636 -10.35865 -10.12059 -9.91493 -9.70483 -9.50671 -9.33878 -9.07183 -8.64413 -8.43847 -7.42688 -7.08739 -4.83967 1.90345 2.65828 2.91821 3.57561 3.61877 3.86784 4.05709 4.14224 4.40267 4.63875 4.67817 4.81569 5.08291 5.09689 5.20511 5.36944 5.38427 5.47746 5.52622 5.55442 5.65388 5.68185 5.72370 5.76643 5.90294 5.91030 6.03282 6.14168 6.18346 6.23845 6.30613 6.38078 6.53756 6.56379 6.75720 7.12639 7.39510 7.54463 8.04557 8.34856 8.55358 9.95915 10.11771 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.027353 B = 0.004883 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.407257 B = 5733.230650 C = 6535.068273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.054 4.054 8 H 0.096 0.904 9 S -0.059 6.059 10 C 0.072 3.928 11 N -0.266 5.266 12 N -0.418 5.418 13 C 0.345 3.655 14 C -0.493 4.493 15 H 0.083 0.917 16 C 0.064 3.936 17 N -0.808 5.808 18 Si 1.118 2.882 19 H -0.272 1.272 20 H -0.313 1.313 21 H -0.273 1.273 22 N -0.513 5.513 23 C 0.102 3.898 24 C -0.095 4.095 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.283 0.717 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.608 -1.378 -3.125 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.183 4.183 8 H 0.115 0.885 9 S 0.171 5.829 10 C -0.301 4.301 11 N -0.109 5.109 12 N -0.268 5.268 13 C 0.102 3.898 14 C -0.534 4.534 15 H 0.101 0.899 16 C -0.159 4.159 17 N -0.432 5.432 18 Si 0.947 3.053 19 H -0.198 1.198 20 H -0.243 1.243 21 H -0.200 1.200 22 N -0.214 5.214 23 C -0.042 4.042 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.194 -0.272 -4.485 17.772 hybrid contribution -0.099 -1.333 1.843 2.277 sum -17.294 -1.605 -2.642 17.568 Atomic orbital electron populations 1.21821 0.95174 1.01743 1.01575 1.21109 0.95156 0.99833 0.94512 0.90938 1.21630 0.96079 1.00417 0.97037 1.21521 0.94790 1.01255 0.97776 1.21886 1.03340 0.98168 0.92074 1.23142 0.97629 1.02753 0.94816 0.88537 1.84509 0.92105 1.72439 1.33839 1.25399 0.95014 1.12226 0.97507 1.74194 1.01679 1.15872 1.19200 1.73834 1.04733 1.30584 1.17623 1.21680 0.86920 0.91413 0.89830 1.19393 0.88674 1.30189 1.15098 0.89938 1.27361 0.90406 0.95302 1.02798 1.70686 1.24023 1.29045 1.19463 0.82593 0.72121 0.77478 0.73112 1.19789 1.24324 1.19976 1.45833 1.05663 1.47752 1.22153 1.21529 1.02516 0.95124 0.85061 1.21450 0.92162 1.01490 0.98288 0.92722 0.92721 0.92684 0.92200 0.92073 0.91728 0.91932 0.89036 0.91980 0.90585 0.92229 0.91153 0.90307 0.91258 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.10 16 3 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 4 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 5 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 6 C -0.12 -1.76 5.02 -26.73 -0.13 -1.90 16 7 C -0.05 -0.81 2.17 -26.70 -0.06 -0.86 16 8 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 9 S -0.06 -1.02 21.24 -107.50 -2.28 -3.30 16 10 C 0.07 1.64 7.77 -87.28 -0.68 0.96 16 11 N -0.27 -6.75 9.74 30.89 0.30 -6.45 16 12 N -0.42 -11.61 7.55 31.26 0.24 -11.38 16 13 C 0.34 9.26 7.30 -154.81 -1.13 8.13 16 14 C -0.49 -13.34 9.49 -38.32 -0.36 -13.71 16 15 H 0.08 2.17 7.47 -52.49 -0.39 1.77 16 16 C 0.06 1.74 5.52 -17.29 -0.10 1.64 16 17 N -0.81 -21.87 13.65 55.56 0.76 -21.11 16 18 Si 1.12 28.43 25.75 -169.99 -4.38 24.05 16 19 H -0.27 -7.14 6.95 56.52 0.39 -6.75 16 20 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 21 H -0.27 -7.10 7.09 56.52 0.40 -6.70 16 22 N -0.51 -11.99 3.26 -123.18 -0.40 -12.39 16 23 C 0.10 1.84 10.89 59.85 0.65 2.49 16 24 C -0.09 -1.08 4.49 -26.70 -0.12 -1.20 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.76 5.89 -51.93 -0.31 1.45 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.28 7.27 8.72 -40.82 -0.36 6.91 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 37 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -30.40 321.28 -9.21 -39.61 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.15 Total: -4.59 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.13 Total: -9.28 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.89 Total: -51.32 kcal Atomic # 14 Polarization: 28.43 SS G_CDS: -4.38 Total: 24.05 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.28 Total: -3.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.40 -9.21 -39.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336347515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.987 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds