Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48507 * 109.47101 * 269.99705 * 3 2 1 5 5 H 1.48506 * 109.47433 * 29.99593 * 3 2 1 6 6 H 1.48503 * 109.47141 * 149.99849 * 3 2 1 7 7 C 1.37883 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99360 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47285 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47004 * 174.64304 * 11 10 9 13 13 C 1.46896 * 111.00038 * 74.75871 * 12 11 10 14 14 C 1.53001 * 109.47445 * 50.15382 * 13 12 11 15 15 F 1.39894 * 109.47000 * 52.46478 * 14 13 12 16 16 F 1.39903 * 109.47348 * 172.46907 * 14 13 12 17 17 F 1.39907 * 109.46775 * 292.47051 * 14 13 12 18 18 C 1.46904 * 110.99498 * 198.71214 * 12 11 10 19 19 H 1.08999 * 110.43785 * 98.79960 * 18 12 11 20 20 C 1.54814 * 110.48463 * 221.48375 * 18 12 11 21 21 C 1.54995 * 102.09474 * 139.55506 * 20 18 12 22 22 O 1.44575 * 103.58402 * 323.05987 * 21 20 18 23 23 C 1.43743 * 106.87457 * 39.87227 * 22 21 20 24 24 H 0.96993 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46973 * 60.00165 * 9 7 2 26 26 H 1.08997 * 109.47426 * 300.00660 * 9 7 2 27 27 H 1.09001 * 109.47232 * 60.00081 * 10 9 7 28 28 H 1.09000 * 109.47272 * 299.99972 * 10 9 7 29 29 H 1.09001 * 109.47257 * 54.64090 * 11 10 9 30 30 H 1.09000 * 109.46743 * 294.63972 * 11 10 9 31 31 H 1.08998 * 109.47327 * 170.15458 * 13 12 11 32 32 H 1.08999 * 109.47089 * 290.14945 * 13 12 11 33 33 H 1.08998 * 110.90898 * 257.75324 * 20 18 12 34 34 H 1.09004 * 110.90778 * 21.35674 * 20 18 12 35 35 H 1.09005 * 110.61379 * 81.47450 * 21 20 18 36 36 H 1.08995 * 110.61847 * 204.31495 * 21 20 18 37 37 H 1.08991 * 109.88097 * 214.17242 * 23 22 21 38 38 H 1.08998 * 109.87402 * 93.17415 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9872 0.0033 12 7 2.4298 -6.1007 -0.1250 13 6 3.1501 -6.3262 1.1352 14 6 2.1470 -6.4171 2.2869 15 9 1.1654 -7.3643 1.9766 16 9 2.8127 -6.8010 3.4560 17 9 1.5457 -5.1688 2.4811 18 6 1.7488 -7.3245 -0.5685 19 1 1.8771 -7.4638 -1.6419 20 6 2.2825 -8.5531 0.2078 21 6 0.9854 -9.3599 0.4703 22 8 -0.0055 -8.3375 0.7212 23 6 0.2519 -7.2702 -0.2066 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8720 -3.6035 0.8927 28 1 2.8720 -3.6051 -0.8873 29 1 0.7839 -5.0050 -0.8350 30 1 0.9273 -5.0870 0.9373 31 1 3.7137 -7.2569 1.0700 32 1 3.8357 -5.4981 1.3149 33 1 2.9801 -9.1262 -0.4030 34 1 2.7478 -8.2488 1.1453 35 1 0.7144 -9.9470 -0.4072 36 1 1.1043 -10.0051 1.3407 37 1 0.0170 -6.3119 0.2563 38 1 -0.3515 -7.4059 -1.1041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336705845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = -138.757501 kcal Electronic energy + Delta-G solvation = -24499.604242 eV Core-core repulsion = 20543.656131 eV Total energy + Delta-G solvation = -3955.948110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.17018 -47.55667 -47.51424 -40.13088 -37.00227 -33.88628 -32.03911 -30.61406 -30.23583 -27.54121 -25.99528 -23.97690 -23.01282 -22.07891 -20.46537 -19.77494 -18.53797 -18.52475 -17.65903 -16.78852 -16.41314 -16.16037 -15.45837 -15.19614 -14.83591 -14.39400 -14.25411 -13.98462 -13.93914 -13.69903 -13.23761 -13.16388 -13.04318 -12.71552 -12.31793 -12.13405 -11.87996 -11.59871 -11.50766 -11.30086 -11.16218 -10.81812 -10.69001 -10.55563 -10.50521 -9.69182 -9.50897 -9.33549 -9.05925 -8.36341 -8.31375 -5.96890 -3.98842 2.93264 3.34084 3.40194 3.43298 3.49125 3.86976 3.97608 4.15936 4.25153 4.39931 4.49374 4.75183 4.75699 4.87448 5.03768 5.13757 5.36779 5.39369 5.46802 5.48674 5.54028 5.63842 5.73845 5.83696 5.91558 6.27059 6.46381 6.62898 6.76391 6.88207 7.08444 7.16975 7.70634 7.85786 8.03314 8.46086 9.08099 9.64927 11.14612 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.004695 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.855399 B = 5962.937031 C = 6278.906939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.098 4.098 11 C 0.001 3.999 12 N -0.506 5.506 13 C 0.000 4.000 14 C 0.387 3.613 15 F -0.149 7.149 16 F -0.195 7.195 17 F -0.166 7.166 18 C 0.044 3.956 19 H 0.105 0.895 20 C -0.180 4.180 21 C 0.051 3.949 22 O -0.361 6.361 23 C 0.010 3.990 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -19.588 1.156 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.124 4.124 12 N -0.227 5.227 13 C -0.130 4.130 14 C 0.330 3.670 15 F -0.130 7.130 16 F -0.177 7.177 17 F -0.148 7.148 18 C -0.064 4.064 19 H 0.123 0.877 20 C -0.217 4.217 21 C -0.026 4.026 22 O -0.280 6.280 23 C -0.068 4.068 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.823 -19.342 0.942 19.957 hybrid contribution -0.152 0.777 0.540 0.958 sum 4.671 -18.565 1.482 19.201 Atomic orbital electron populations 1.69967 1.06048 1.26538 1.50989 1.25022 0.94831 0.99219 0.95404 0.86607 0.79855 0.83549 0.78054 1.20698 1.21272 1.19895 1.21224 0.93001 0.90997 1.50362 0.92709 1.19049 0.94002 0.91250 0.97152 1.21578 0.99131 0.92190 1.00673 1.23429 0.94966 0.90645 1.03364 1.62622 1.29946 1.05113 1.25035 1.24013 0.96120 1.07490 0.85420 1.22575 0.84436 0.74970 0.84998 1.93555 1.63781 1.64015 1.91675 1.93148 1.80615 1.91274 1.52626 1.93077 1.84524 1.42226 1.94935 1.23411 0.92486 0.89375 1.01120 0.87730 1.24083 0.99150 0.96687 1.01807 1.23478 0.86747 0.91328 1.01044 1.88964 1.53059 1.28945 1.57011 1.24210 0.95598 0.93208 0.93761 0.93050 0.96672 0.96621 0.93550 0.92558 0.90424 0.90233 0.85610 0.85958 0.89818 0.88962 0.92341 0.89136 0.87853 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.63 5.46 -17.81 -0.10 1.53 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.10 -1.98 4.95 -26.73 -0.13 -2.11 16 11 C 0.00 0.02 2.90 -3.82 -0.01 0.01 16 12 N -0.51 -6.77 4.90 -224.82 -1.10 -7.88 16 13 C 0.00 0.00 4.98 -3.83 -0.02 -0.02 16 14 C 0.39 5.35 2.39 37.16 0.09 5.44 16 15 F -0.15 -2.09 8.25 2.25 0.02 -2.07 16 16 F -0.19 -2.64 17.32 2.25 0.04 -2.60 16 17 F -0.17 -2.83 13.51 2.25 0.03 -2.80 16 18 C 0.04 0.50 3.80 -66.18 -0.25 0.25 16 19 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.18 -1.65 5.24 -24.72 -0.13 -1.78 16 21 C 0.05 0.50 7.16 38.21 0.27 0.77 16 22 O -0.36 -4.87 9.03 -35.23 -0.32 -5.19 16 23 C 0.01 0.13 5.47 37.73 0.21 0.33 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.93 7.11 -51.93 -0.37 0.56 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.29 7.10 -51.93 -0.37 0.92 16 30 H 0.08 1.40 3.16 -51.93 -0.16 1.24 16 31 H 0.13 1.14 5.44 -51.93 -0.28 0.86 16 32 H 0.12 1.46 7.35 -51.93 -0.38 1.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.88 3.39 -51.93 -0.18 0.70 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.54 4.31 -51.93 -0.22 1.31 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -31.28 292.66 -6.62 -37.90 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.89 Total: -1.96 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.52 Total: -10.17 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.37 Total: -34.32 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.32 Total: -5.19 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.09 Total: -7.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.28 -6.62 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336705845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.860 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds