Wall clock time and date at job start Tue Mar 31 2020 05:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99939 * 2 1 4 4 H 1.48496 * 109.47306 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.47567 * 30.00214 * 3 2 1 6 6 H 1.48506 * 109.47101 * 150.00184 * 3 2 1 7 7 C 1.37875 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46794 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46687 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00335 * 66.04451 * 12 11 10 14 14 C 1.52998 * 109.47245 * 200.71191 * 13 12 11 15 15 F 1.39900 * 109.46853 * 53.90442 * 14 13 12 16 16 F 1.39891 * 109.47036 * 173.90551 * 14 13 12 17 17 F 1.39903 * 109.46737 * 293.90685 * 14 13 12 18 18 C 1.46906 * 110.99480 * 190.00051 * 12 11 10 19 19 H 1.09007 * 110.82556 * 189.17785 * 18 12 11 20 20 C 1.54811 * 110.91006 * 65.53066 * 18 12 11 21 21 C 1.54089 * 104.18670 * 220.92079 * 20 18 12 22 22 O 1.43744 * 107.29632 * 357.96677 * 21 20 18 23 23 C 1.44383 * 106.97134 * 26.51869 * 22 21 20 24 24 H 0.97006 * 119.99800 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47056 * 59.99936 * 9 7 2 26 26 H 1.09001 * 109.46611 * 300.00451 * 9 7 2 27 27 H 1.08998 * 109.47491 * 59.99890 * 10 9 7 28 28 H 1.08998 * 109.47036 * 299.99558 * 10 9 7 29 29 H 1.08995 * 109.47437 * 60.00160 * 11 10 9 30 30 H 1.08998 * 109.46936 * 299.99579 * 11 10 9 31 31 H 1.09001 * 109.46491 * 320.71339 * 13 12 11 32 32 H 1.09004 * 109.46820 * 80.71067 * 13 12 11 33 33 H 1.08997 * 110.48525 * 339.60057 * 20 18 12 34 34 H 1.08998 * 110.48368 * 102.24143 * 20 18 12 35 35 H 1.08996 * 109.88260 * 117.39410 * 21 20 18 36 36 H 1.09009 * 109.87778 * 238.54561 * 21 20 18 37 37 H 1.09005 * 110.61610 * 201.43554 * 23 22 21 38 38 H 1.08996 * 110.61971 * 78.43661 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.2003 -6.1426 1.2514 14 6 4.4896 -6.9378 1.0370 15 9 5.1901 -6.4058 -0.0509 16 9 5.2830 -6.8585 2.1864 17 9 4.1746 -8.2763 0.7793 18 6 1.7502 -7.3813 -0.2406 19 1 2.4282 -8.2200 -0.0813 20 6 1.1424 -7.4249 -1.6637 21 6 -0.2324 -8.0925 -1.4669 22 8 -0.3473 -8.4318 -0.0748 23 6 0.4913 -7.5100 0.6543 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.8538 -5.0446 -0.8913 30 1 0.8533 -5.0451 0.8886 31 1 3.4469 -5.1262 1.5581 32 1 2.6028 -6.6215 2.0273 33 1 1.0236 -6.4161 -2.0588 34 1 1.7662 -8.0243 -2.3267 35 1 -1.0250 -7.3983 -1.7458 36 1 -0.2966 -8.9951 -2.0748 37 1 0.7540 -7.9193 1.6298 38 1 -0.0030 -6.5446 0.7625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336705855.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:21 Heat of formation + Delta-G solvation = -201.305339 kcal Electronic energy + Delta-G solvation = -23288.835527 eV Core-core repulsion = 19330.175139 eV Total energy + Delta-G solvation = -3958.660388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.06805 -47.66385 -47.44778 -40.07314 -37.15601 -33.84008 -31.79689 -31.42726 -29.38153 -28.06584 -25.91974 -23.47150 -23.43031 -22.16387 -20.55764 -19.90843 -18.52379 -18.42259 -17.47228 -16.73016 -16.37566 -16.24275 -15.21785 -14.96813 -14.59020 -14.47258 -14.41635 -14.18000 -14.13772 -13.91919 -13.69644 -13.61174 -13.48822 -12.99133 -12.52206 -12.31003 -11.91740 -11.69028 -11.63844 -11.40707 -11.23972 -10.86587 -10.80938 -10.59221 -10.48528 -9.87754 -9.74290 -9.44302 -9.14553 -8.45609 -8.39271 -6.04757 -4.07237 2.71501 3.29781 3.32076 3.36351 3.39786 3.78782 4.00846 4.04232 4.39701 4.44693 4.47076 4.61342 4.91278 4.96902 5.06005 5.13293 5.21195 5.31424 5.33576 5.50997 5.60448 5.67730 5.75001 5.79203 5.94877 6.13537 6.44543 6.48279 6.65382 6.83509 7.00136 7.04770 7.60228 7.72385 7.94283 8.36748 8.99685 9.57484 11.06549 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.004858 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.675893 B = 5762.446595 C = 7084.874114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.050 3.950 12 N -0.518 5.518 13 C 0.001 3.999 14 C 0.458 3.542 15 F -0.170 7.170 16 F -0.186 7.186 17 F -0.187 7.187 18 C 0.032 3.968 19 H 0.112 0.888 20 C -0.148 4.148 21 C 0.046 3.954 22 O -0.376 6.376 23 C 0.010 3.990 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -16.961 0.775 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.076 4.076 12 N -0.242 5.242 13 C -0.129 4.129 14 C 0.403 3.597 15 F -0.151 7.151 16 F -0.168 7.168 17 F -0.169 7.169 18 C -0.077 4.077 19 H 0.129 0.871 20 C -0.186 4.186 21 C -0.031 4.031 22 O -0.294 6.294 23 C -0.069 4.069 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.149 0.851 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.109 -16.955 0.462 17.452 hybrid contribution 0.202 0.877 0.513 1.036 sum 4.311 -16.078 0.975 16.674 Atomic orbital electron populations 1.69962 1.06070 1.26664 1.50816 1.25017 0.94839 0.99295 0.95255 0.86595 0.79849 0.83416 0.78160 1.20626 1.21244 1.19850 1.21219 0.93068 0.90939 1.50656 0.92616 1.19063 0.93914 0.91274 0.97225 1.21746 0.99295 0.92452 1.01102 1.22514 0.93738 0.89941 1.01402 1.61993 1.27528 1.03586 1.31051 1.23345 0.91776 1.03551 0.94194 1.20585 0.87194 0.78031 0.73917 1.93213 1.80830 1.85806 1.55284 1.93176 1.76737 1.96159 1.50712 1.93075 1.92459 1.37339 1.94006 1.23767 0.95296 0.93137 0.95476 0.87067 1.22969 0.95902 1.03051 0.96715 1.23197 0.96616 1.00008 0.83313 1.88850 1.67809 1.55007 1.17766 1.24345 0.91213 0.94733 0.96564 0.92977 0.96493 0.96724 0.93374 0.92058 0.89835 0.93986 0.85135 0.90101 0.89141 0.90019 0.92088 0.89835 0.89295 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.03 5.13 -26.73 -0.14 -2.17 16 11 C 0.05 0.75 3.78 -3.82 -0.01 0.73 16 12 N -0.52 -6.75 4.25 -224.24 -0.95 -7.70 16 13 C 0.00 0.01 4.89 -3.82 -0.02 0.00 16 14 C 0.46 5.58 3.27 37.16 0.12 5.71 16 15 F -0.17 -2.40 17.13 2.25 0.04 -2.36 16 16 F -0.19 -2.28 17.32 2.25 0.04 -2.24 16 17 F -0.19 -2.25 14.65 2.25 0.03 -2.22 16 18 C 0.03 0.38 3.02 -65.70 -0.20 0.18 16 19 H 0.11 1.30 5.38 -51.93 -0.28 1.02 16 20 C -0.15 -1.63 6.45 -25.21 -0.16 -1.79 16 21 C 0.05 0.49 7.70 37.73 0.29 0.78 16 22 O -0.38 -4.91 11.52 -35.23 -0.41 -5.32 16 23 C 0.01 0.12 6.42 38.21 0.25 0.36 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.87 6.24 -51.93 -0.32 0.55 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.26 6.15 -51.93 -0.32 0.94 16 30 H 0.04 0.62 6.47 -51.93 -0.34 0.28 16 31 H 0.13 1.59 5.87 -51.93 -0.30 1.28 16 32 H 0.08 0.80 7.28 -51.93 -0.38 0.42 16 33 H 0.09 1.07 6.24 -51.93 -0.32 0.74 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.09 0.94 7.91 -51.93 -0.41 0.53 16 38 H 0.07 0.92 5.60 -51.93 -0.29 0.63 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -29.59 311.27 -6.31 -35.91 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.05 Total: -2.55 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.42 Total: -8.89 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: -0.22 Total: -33.32 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.41 Total: -5.32 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.59 -6.31 -35.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336705855.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.400 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds