Wall clock time and date at job start Tue Mar 31 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.46979 * 2 1 4 4 O 1.33628 * 125.80892 * 270.02379 * 3 2 1 5 5 C 1.34212 * 110.92715 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.43027 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47034 * 270.02258 * 6 5 4 8 8 C 1.46895 * 111.00099 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47336 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47505 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99169 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00386 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99990 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00020 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47106 * 60.00587 * 14 12 10 16 16 H 1.48503 * 109.46928 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47439 * 300.00185 * 14 12 10 18 18 C 1.34164 * 109.14282 * 359.97438 * 5 4 3 19 19 C 1.36496 * 125.80677 * 90.00349 * 3 2 1 20 20 C 1.47231 * 127.20133 * 0.03644 * 19 3 2 21 21 O 1.21532 * 120.00209 * 0.02562 * 20 19 3 22 22 O 1.34774 * 119.99836 * 180.02562 * 20 19 3 23 23 C 1.45194 * 117.00102 * 180.02562 * 22 20 19 24 24 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47179 * 299.99864 * 1 2 3 26 26 H 1.09005 * 109.46957 * 60.00211 * 1 2 3 27 27 H 1.09010 * 109.47445 * 240.00223 * 2 1 3 28 28 H 1.08998 * 109.47788 * 119.99824 * 2 1 3 29 29 H 1.08990 * 109.47103 * 30.02134 * 6 5 4 30 30 H 1.08997 * 109.47252 * 150.02295 * 6 5 4 31 31 H 1.00902 * 110.99970 * 56.04006 * 7 6 5 32 32 H 1.08992 * 109.47371 * 300.00077 * 8 7 6 33 33 H 1.09000 * 109.47377 * 59.99940 * 8 7 6 34 34 H 1.09008 * 109.47305 * 300.00037 * 9 8 7 35 35 H 1.09000 * 109.46876 * 59.99708 * 9 8 7 36 36 H 0.96992 * 119.99945 * 179.97438 * 13 12 10 37 37 H 1.07999 * 127.02221 * 179.73892 * 18 5 4 38 38 H 1.09000 * 109.47087 * 300.00403 * 23 22 20 39 39 H 1.09001 * 109.47052 * 59.99713 * 23 22 20 40 40 H 1.08999 * 109.47540 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2924 2.1581 -1.0837 5 6 2.7244 3.3812 -0.7390 6 6 3.1109 4.4746 -1.7014 7 7 4.5422 4.3682 -2.0141 8 6 4.9557 5.4202 -2.9523 9 6 6.4491 5.2774 -3.2529 10 6 6.8732 6.3562 -4.2159 11 1 6.1499 7.0723 -4.5771 12 6 8.1846 6.4296 -4.6350 13 7 9.0655 5.5578 -4.1947 14 14 8.7101 7.7664 -5.8292 15 1 8.4511 9.0985 -5.2262 16 1 10.1596 7.6279 -6.1208 17 1 7.9372 7.6353 -7.0904 18 6 2.7572 3.4753 0.5989 19 6 2.2985 2.1738 1.1070 20 6 2.1559 1.7678 2.5150 21 8 1.7623 0.6510 2.7886 22 8 2.4617 2.6348 3.5005 23 6 2.2977 2.1663 4.8650 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.5302 4.3736 -2.6182 30 1 2.9091 5.4453 -1.2486 31 1 4.7664 3.4532 -2.3755 32 1 4.3879 5.3254 -3.8778 33 1 4.7667 6.3977 -2.5086 34 1 7.0168 5.3725 -2.3271 35 1 6.6386 4.2999 -3.6964 36 1 9.9880 5.6093 -4.4899 37 1 3.0633 4.3304 1.1834 38 1 1.2567 1.8892 5.0313 39 1 2.9356 1.2981 5.0302 40 1 2.5771 2.9601 5.5578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338933073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:09 Heat of formation + Delta-G solvation = -87.342623 kcal Electronic energy + Delta-G solvation = -21174.021911 eV Core-core repulsion = 17762.160058 eV Total energy + Delta-G solvation = -3411.861854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.77013 -40.25917 -36.68878 -36.22340 -34.27717 -33.30570 -32.71950 -30.64032 -28.58100 -27.95470 -25.55632 -24.44332 -23.46659 -22.33229 -21.54053 -20.64552 -19.60142 -17.75570 -16.85996 -16.67276 -16.35455 -16.13637 -15.94213 -15.44766 -14.64990 -14.53335 -14.35515 -13.93699 -13.61701 -13.44981 -13.16792 -13.04241 -12.69023 -12.35943 -12.34050 -12.18192 -11.95120 -11.77786 -11.29319 -11.10511 -10.98500 -10.93298 -10.67360 -10.58710 -10.05157 -9.93119 -9.48367 -9.21447 -8.60461 -8.37063 -7.96993 -6.01292 -4.04525 0.99988 1.89402 2.39078 2.72009 2.93052 3.32595 3.37179 3.39229 4.21066 4.42848 4.51547 4.72761 4.81986 4.87394 4.88862 4.95386 4.96576 5.16521 5.20321 5.29472 5.34601 5.37999 5.53574 5.59937 5.64280 5.81132 5.83196 5.94030 6.18778 6.23244 6.27196 6.29326 6.89604 6.97824 7.31782 7.60462 7.65949 7.72596 7.86232 8.04021 8.39534 9.02412 9.59414 11.10082 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.002785 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.378530 B =10051.643899 C =10644.567794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C 0.094 3.906 4 O -0.166 6.166 5 C -0.002 4.002 6 C 0.137 3.863 7 N -0.687 5.687 8 C 0.065 3.935 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.148 4.148 19 C -0.237 4.237 20 C 0.545 3.455 21 O -0.514 6.514 22 O -0.350 6.350 23 C 0.038 3.962 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.341 0.659 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.164 0.836 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 -9.123 13.288 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.041 3.959 4 O -0.062 6.062 5 C -0.050 4.050 6 C 0.008 3.992 7 N -0.319 5.319 8 C -0.062 4.062 9 C -0.012 4.012 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.168 4.168 19 C -0.239 4.239 20 C 0.391 3.609 21 O -0.405 6.405 22 O -0.266 6.266 23 C -0.056 4.056 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.181 0.819 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.400 -9.199 13.641 23.947 hybrid contribution 0.092 0.429 -1.099 1.183 sum -17.308 -8.770 12.542 23.104 Atomic orbital electron populations 1.21697 0.93196 1.02727 1.02471 1.20447 0.97047 0.86375 1.05372 1.22786 0.96055 0.94041 0.83032 1.83745 1.64862 1.23094 1.34529 1.22401 1.02811 0.84624 0.95178 1.20441 0.90833 0.92888 0.95002 1.60707 1.12822 1.08455 1.49914 1.22224 0.99937 0.92904 0.91165 1.19069 0.88095 0.97021 0.97021 1.21120 0.94450 1.13876 1.26823 0.92726 1.25004 0.96716 0.96087 0.96533 1.69963 1.03196 1.35742 1.44273 0.86631 0.77467 0.82289 0.81443 1.20187 1.21262 1.20284 1.22588 1.03557 0.97432 0.93189 1.20106 1.16470 0.97176 0.90195 1.19956 0.73332 0.82285 0.85296 1.90803 1.44131 1.21124 1.84462 1.86596 1.79336 1.44154 1.16543 1.23273 1.02287 1.01377 0.78684 0.91198 0.92092 0.92315 0.89438 0.87010 0.93714 0.87883 0.84129 0.96213 0.91898 0.95506 0.96736 0.92878 0.81864 0.91935 0.91812 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.15 0.37 -0.85 16 2 C -0.06 -0.55 5.94 -27.88 -0.17 -0.71 16 3 C 0.09 1.20 6.63 -34.93 -0.23 0.97 16 4 O -0.17 -2.28 10.52 7.72 0.08 -2.20 16 5 C 0.00 -0.03 6.79 -35.74 -0.24 -0.27 16 6 C 0.14 1.91 6.20 -4.98 -0.03 1.88 16 7 N -0.69 -11.98 6.49 -115.07 -0.75 -12.72 16 8 C 0.07 1.32 5.62 -3.83 -0.02 1.30 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 10 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 11 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.15 -1.99 10.93 -37.44 -0.41 -2.40 16 19 C -0.24 -3.20 6.32 -103.30 -0.65 -3.85 16 20 C 0.54 7.20 7.95 34.38 0.27 7.47 16 21 O -0.51 -7.13 14.64 -19.29 -0.28 -7.41 16 22 O -0.35 -4.17 10.48 -40.69 -0.43 -4.59 16 23 C 0.04 0.30 10.57 101.05 1.07 1.37 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.11 1.16 6.49 -51.93 -0.34 0.82 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.34 5.94 8.72 -39.29 -0.34 5.60 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -31.82 348.08 -7.16 -38.98 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.14 Total: 0.38 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.60 Total: -8.04 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.01 Total: -38.85 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.63 Total: -14.21 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.82 -7.16 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338933073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.368 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds