Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76198 * 102.99770 * 2 1 4 4 C 1.39231 * 120.04633 * 180.02562 * 3 2 1 5 5 N 1.32014 * 120.07207 * 179.97438 * 4 3 2 6 6 C 1.32082 * 120.18160 * 0.02562 * 5 4 3 7 7 C 1.39140 * 120.09294 * 359.97438 * 6 5 4 8 8 N 1.39000 * 120.03502 * 179.97438 * 7 6 5 9 9 C 1.46495 * 120.00359 * 0.02562 * 8 7 6 10 10 C 1.52996 * 109.47632 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47196 * 300.00459 * 10 9 8 12 12 C 1.53003 * 109.46861 * 60.00179 * 10 9 8 13 13 C 1.52996 * 109.47444 * 179.97438 * 10 9 8 14 14 C 1.50707 * 109.47078 * 180.02562 * 13 10 9 15 15 H 1.07995 * 119.99942 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99625 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00399 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99522 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47482 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47415 * 120.00078 * 18 16 14 21 21 H 1.48503 * 109.46906 * 239.99618 * 18 16 14 22 22 N 1.32751 * 119.92815 * 359.97438 * 7 6 5 23 23 H 1.08999 * 109.47323 * 60.00500 * 1 2 3 24 24 H 1.09007 * 109.46680 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47296 * 299.99611 * 1 2 3 26 26 H 1.08000 * 119.96336 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.95596 * 179.97438 * 6 5 4 28 28 H 0.97003 * 119.99915 * 180.02562 * 8 7 6 29 29 H 1.09008 * 109.47399 * 300.00387 * 9 8 7 30 30 H 1.09003 * 109.47077 * 60.00035 * 9 8 7 31 31 H 1.08999 * 109.47078 * 59.99548 * 11 10 9 32 32 H 1.08998 * 109.47310 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.46959 * 299.99384 * 11 10 9 34 34 H 1.09000 * 109.47338 * 60.00096 * 12 10 9 35 35 H 1.08998 * 109.47160 * 180.02562 * 12 10 9 36 36 H 1.08999 * 109.47135 * 300.00281 * 12 10 9 37 37 H 1.08991 * 109.47353 * 300.00459 * 13 10 9 38 38 H 1.09003 * 109.47049 * 60.00410 * 13 10 9 39 39 H 0.97004 * 120.00222 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5415 2.1250 -0.0005 5 7 3.8390 3.4112 -0.0011 6 6 2.8762 4.3155 -0.0005 7 6 1.5435 3.9156 0.0000 8 7 0.5313 4.8682 0.0011 9 6 0.8673 6.2941 0.0011 10 6 -0.4197 7.1215 0.0017 11 6 -1.2393 6.7906 -1.2471 12 6 -1.2381 6.7904 1.2513 13 6 -0.0687 8.6106 0.0023 14 6 -1.3365 9.4255 0.0036 15 1 -2.2964 8.9307 0.0035 16 6 -1.2707 10.8027 0.0038 17 7 -0.1017 11.4052 0.0035 18 14 -2.8421 11.8127 0.0061 19 1 -4.0156 10.9027 0.0068 20 1 -2.8784 12.6690 1.2188 21 1 -2.8815 12.6696 -1.2061 22 7 1.2398 2.6233 -0.0005 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 4.3315 1.3886 -0.0014 27 1 3.1237 5.3667 -0.0005 28 1 -0.3976 4.5889 0.0018 29 1 1.4516 6.5298 0.8906 30 1 1.4500 6.5301 -0.8894 31 1 -1.4893 5.7297 -1.2471 32 1 -2.1564 7.3797 -1.2464 33 1 -0.6562 7.0265 -2.1374 34 1 -0.6542 7.0261 2.1411 35 1 -2.1552 7.3795 1.2516 36 1 -1.4881 5.7295 1.2514 37 1 0.5150 8.8460 0.8922 38 1 0.5145 8.8468 -0.8877 39 1 -0.0554 12.3742 0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340935352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = 30.370814 kcal Electronic energy + Delta-G solvation = -19494.914251 eV Core-core repulsion = 16563.202458 eV Total energy + Delta-G solvation = -2931.711794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86651 -37.97932 -34.98917 -33.84080 -32.35833 -29.88019 -29.14128 -27.13718 -26.60516 -26.37719 -24.66506 -23.59149 -22.37324 -18.73859 -18.09811 -17.45605 -16.63159 -16.36863 -16.08608 -15.32192 -14.68934 -14.51599 -14.36824 -14.24078 -13.65773 -13.28344 -13.09484 -12.92167 -12.63784 -12.62774 -12.14367 -11.53483 -11.51822 -11.31033 -11.10186 -10.90555 -10.88288 -10.76296 -10.55442 -10.53537 -10.32216 -9.93622 -9.32938 -9.16666 -9.01538 -8.43634 -8.29568 -7.53136 -6.07732 -4.09057 0.82072 1.21132 1.31392 1.96029 3.15636 3.25487 3.34153 3.36424 3.73854 4.38956 4.45178 4.51755 4.77383 4.94373 4.97247 5.16822 5.27423 5.27997 5.37257 5.42601 5.56433 5.63696 5.94431 6.03257 6.09597 6.21186 6.25181 6.51119 6.53883 6.71284 6.94395 6.96842 7.00515 7.40361 7.52977 7.55706 7.64355 7.90360 7.93058 8.32023 8.95554 9.54798 11.03716 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.036019 B = 0.003239 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.184393 B = 8643.595590 C = 9219.122351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.068 6.068 3 C 0.122 3.878 4 C -0.009 4.009 5 N -0.386 5.386 6 C -0.020 4.020 7 C 0.380 3.620 8 N -0.699 5.699 9 C 0.128 3.872 10 C -0.069 4.069 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.512 4.512 15 H 0.060 0.940 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 N -0.520 5.520 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.168 0.832 28 H 0.406 0.594 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -19.608 -0.005 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.169 5.831 3 C -0.131 4.131 4 C -0.176 4.176 5 N -0.099 5.099 6 C -0.191 4.191 7 C 0.135 3.865 8 N -0.330 5.330 9 C 0.004 3.996 10 C -0.070 4.070 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.001 4.001 14 C -0.551 4.551 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.248 5.248 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.186 0.814 28 H 0.243 0.757 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.175 -20.232 -0.006 20.479 hybrid contribution -2.076 1.742 0.000 2.710 sum 1.098 -18.490 -0.006 18.522 Atomic orbital electron populations 1.23457 0.93600 1.06041 1.06896 1.85444 1.07960 0.98565 1.91161 1.23817 0.93084 0.98373 0.97778 1.22847 0.94065 0.93449 1.07259 1.68198 1.35243 1.01224 1.05270 1.23091 0.87666 1.00739 1.07641 1.19399 0.89533 0.87512 0.90023 1.44942 1.06756 1.04335 1.76992 1.21868 0.99400 0.76904 1.01399 1.20885 0.92218 0.98552 0.95343 1.21765 1.01197 0.98444 0.97112 1.21767 1.01206 0.98439 0.97109 1.19103 0.97243 0.86236 0.97520 1.21198 0.92632 0.90841 1.50394 0.92188 1.25000 0.95854 0.98131 0.95433 1.69959 1.23376 1.09192 1.50803 0.86591 0.83761 0.80382 0.77595 1.19793 1.21076 1.21083 1.68235 1.34560 1.00283 1.21731 0.89397 0.87889 0.89392 0.81784 0.81445 0.75676 0.91586 0.91594 0.95182 0.91299 0.93294 0.93292 0.91297 0.95190 0.96249 0.96253 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 10.04 101.05 1.01 -0.07 16 2 S -0.07 -0.68 22.57 -107.50 -2.43 -3.11 16 3 C 0.12 1.58 7.00 -16.76 -0.12 1.47 16 4 C -0.01 -0.11 10.97 -17.10 -0.19 -0.30 16 5 N -0.39 -5.59 10.48 -12.68 -0.13 -5.72 16 6 C -0.02 -0.28 10.48 -17.11 -0.18 -0.46 16 7 C 0.38 5.49 7.66 -154.72 -1.19 4.31 16 8 N -0.70 -9.76 5.13 -60.34 -0.31 -10.07 16 9 C 0.13 1.93 3.79 -4.05 -0.02 1.91 16 10 C -0.07 -1.23 0.54 -154.51 -0.08 -1.31 16 11 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 12 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 13 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.13 7.65 -34.44 -0.26 -13.39 16 15 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 18 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 N -0.52 -7.36 9.63 -11.09 -0.11 -7.47 16 23 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.17 2.19 6.71 -52.49 -0.35 1.84 16 28 H 0.41 5.53 6.29 -40.82 -0.26 5.27 16 29 H 0.07 0.99 7.94 -51.92 -0.41 0.58 16 30 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 32 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 36 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -28.39 330.54 -8.56 -36.94 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.65 Total: 2.97 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.63 Total: -9.40 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.19 Total: -48.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.43 Total: -3.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.39 -8.56 -36.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340935352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.314 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds