Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.46900 * 111.00559 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.53878 * 34.99770 * 13 12 11 15 15 C 1.53179 * 109.54346 * 274.82590 * 13 12 11 16 16 C 1.53088 * 109.16258 * 297.11186 * 15 13 12 17 17 O 1.42910 * 109.41500 * 302.38961 * 16 15 13 18 18 C 1.42908 * 114.09367 * 61.15777 * 17 16 15 19 19 H 1.08997 * 109.47682 * 58.84416 * 18 17 16 20 20 C 1.53001 * 109.47540 * 178.86150 * 18 17 16 21 21 F 1.39894 * 109.47257 * 59.99895 * 20 18 17 22 22 F 1.39900 * 109.46680 * 180.02562 * 20 18 17 23 23 F 1.39905 * 109.46962 * 299.99782 * 20 18 17 24 24 C 1.53176 * 109.54703 * 155.18081 * 13 12 11 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 31 31 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 32 32 H 1.00905 * 110.99991 * 56.04757 * 12 11 10 33 33 H 1.09002 * 109.52244 * 57.01436 * 15 13 12 34 34 H 1.09001 * 109.52365 * 177.20338 * 15 13 12 35 35 H 1.08998 * 109.48581 * 62.37056 * 16 15 13 36 36 H 1.09000 * 109.48263 * 182.40044 * 16 15 13 37 37 H 1.08999 * 109.52316 * 182.79458 * 24 13 12 38 38 H 1.09003 * 109.51942 * 302.98117 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 1.7348 -7.3950 0.0018 14 1 0.8215 -7.3145 -0.5877 15 6 1.3832 -7.7872 1.4402 16 6 2.6750 -7.9724 2.2406 17 8 3.4874 -8.9638 1.6086 18 6 3.8864 -8.6294 0.2777 19 1 4.4451 -7.6936 0.2901 20 6 4.7704 -9.7441 -0.2852 21 9 4.0530 -10.9450 -0.3013 22 9 5.1614 -9.4162 -1.5878 23 9 5.9058 -9.8899 0.5192 24 6 2.6425 -8.4701 -0.6035 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 0.8540 -5.0446 0.8914 31 1 0.8534 -5.0452 -0.8885 32 1 3.0698 -6.0362 0.7832 33 1 0.7821 -7.0003 1.8958 34 1 0.8203 -8.7207 1.4360 35 1 3.2177 -7.0279 2.2785 36 1 2.4321 -8.2931 3.2536 37 1 2.1050 -9.4173 -0.6489 38 1 2.9411 -8.1712 -1.6083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348105100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = -219.118123 kcal Electronic energy + Delta-G solvation = -22660.179935 eV Core-core repulsion = 18700.747127 eV Total energy + Delta-G solvation = -3959.432808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.28574 -47.81160 -47.75214 -40.18752 -36.53310 -34.04384 -32.53826 -32.11854 -29.96087 -27.24542 -25.86258 -24.42208 -22.98911 -22.61486 -20.31441 -19.81655 -18.73954 -18.44666 -18.23667 -16.42648 -16.33726 -15.90578 -15.77838 -15.15536 -14.65442 -14.59049 -14.44587 -14.31042 -14.24355 -14.19048 -13.91072 -13.89261 -13.64798 -12.68805 -12.44097 -12.36328 -12.24644 -11.90131 -11.66428 -11.54877 -11.22267 -10.90041 -10.80370 -10.62571 -10.51221 -9.91667 -9.76150 -9.38451 -9.10871 -8.38581 -8.36236 -6.02349 -4.04767 2.26484 3.09497 3.32031 3.36380 3.38980 3.56369 3.76754 4.09109 4.28632 4.39419 4.44945 4.57241 4.64014 4.71090 4.79492 5.02741 5.29708 5.33539 5.39620 5.47077 5.65098 5.66135 5.72395 5.77927 5.89428 6.22234 6.54614 6.62457 6.65867 7.06134 7.16331 7.40910 7.64065 7.78261 7.97329 8.40332 9.02139 9.59510 11.09017 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.003105 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.255090 B = 9016.256644 C = 9359.374644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.059 3.941 12 N -0.688 5.688 13 C 0.087 3.913 14 H 0.092 0.908 15 C -0.191 4.191 16 C 0.064 3.936 17 O -0.367 6.367 18 C 0.049 3.951 19 H 0.109 0.891 20 C 0.465 3.535 21 F -0.177 7.177 22 F -0.173 7.173 23 F -0.178 7.178 24 C -0.140 4.140 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.335 0.665 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -20.861 1.748 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.069 4.069 12 N -0.320 5.320 13 C -0.024 4.024 14 H 0.110 0.890 15 C -0.230 4.230 16 C -0.012 4.012 17 O -0.286 6.286 18 C -0.011 4.011 19 H 0.127 0.873 20 C 0.410 3.590 21 F -0.159 7.159 22 F -0.155 7.155 23 F -0.160 7.160 24 C -0.178 4.178 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.517 -20.918 1.137 21.663 hybrid contribution 0.121 1.001 0.758 1.262 sum 5.638 -19.917 1.895 20.786 Atomic orbital electron populations 1.69949 1.06073 1.26732 1.50845 1.25025 0.94849 0.99277 0.95305 0.86653 0.79583 0.83090 0.78653 1.20194 1.21293 1.20252 1.21212 0.93019 0.91056 1.50628 0.92723 1.19053 0.93969 0.91344 0.97115 1.21639 0.99244 0.92967 1.00754 1.22183 0.94067 0.90549 1.00129 1.60753 1.20371 1.01216 1.49619 1.21549 0.96880 0.89379 0.94571 0.88967 1.22893 0.98656 1.03585 0.97896 1.22698 0.90316 0.91636 0.96554 1.87915 1.70139 1.45417 1.25101 1.23171 0.96530 0.95354 0.86003 0.87316 1.20206 0.79626 0.83100 0.76045 1.93184 1.77724 1.48707 1.96252 1.93213 1.91527 1.92514 1.38222 1.93204 1.53309 1.96142 1.73297 1.22282 0.95162 1.00243 1.00096 0.92945 0.96565 0.96829 0.92453 0.93719 0.95495 0.91192 0.84592 0.89877 0.90161 0.92265 0.87622 0.89756 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.12 5.41 -26.73 -0.14 -2.27 16 11 C 0.06 0.92 5.49 -3.83 -0.02 0.90 16 12 N -0.69 -8.67 5.87 -106.54 -0.62 -9.29 16 13 C 0.09 0.90 2.88 -67.53 -0.19 0.70 16 14 H 0.09 0.97 7.80 -51.93 -0.41 0.56 16 15 C -0.19 -1.74 5.72 -26.59 -0.15 -1.89 16 16 C 0.06 0.57 6.58 37.20 0.24 0.82 16 17 O -0.37 -3.92 10.30 -35.23 -0.36 -4.28 16 18 C 0.05 0.50 2.38 -26.59 -0.06 0.43 16 19 H 0.11 1.07 7.37 -51.93 -0.38 0.69 16 20 C 0.46 5.00 2.85 37.16 0.11 5.11 16 21 F -0.18 -2.00 16.70 2.25 0.04 -1.96 16 22 F -0.17 -1.88 16.85 2.25 0.04 -1.84 16 23 F -0.18 -2.08 17.26 2.25 0.04 -2.04 16 24 C -0.14 -1.34 4.88 -26.50 -0.13 -1.47 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.41 7.41 -51.93 -0.38 0.03 16 31 H 0.07 1.12 8.06 -51.93 -0.42 0.71 16 32 H 0.33 3.98 5.82 -39.29 -0.23 3.75 16 33 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.75 7.74 -51.93 -0.40 0.35 16 38 H 0.10 0.94 7.89 -51.93 -0.41 0.53 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -29.80 317.70 -6.70 -36.51 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.43 Total: -1.71 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.90 Total: -10.65 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.11 Total: -35.31 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.36 Total: -4.28 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.80 -6.70 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348105100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.611 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds