Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99873 * 2 1 4 4 H 1.48503 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47016 * 299.99881 * 3 2 1 6 6 H 1.48495 * 109.47320 * 59.99879 * 3 2 1 7 7 C 1.37883 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99554 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46606 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46893 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.46966 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00156 * 180.02562 * 12 11 10 14 14 H 1.09007 * 109.54205 * 324.82661 * 13 12 11 15 15 C 1.53176 * 109.54480 * 84.99894 * 13 12 11 16 16 C 1.53091 * 109.21206 * 62.85762 * 15 13 12 17 17 O 1.43035 * 109.34424 * 57.57779 * 16 15 13 18 18 C 1.42902 * 114.13534 * 298.88074 * 17 16 15 19 19 H 1.08997 * 109.49001 * 301.17362 * 18 17 16 20 20 C 1.52998 * 109.48518 * 181.14081 * 18 17 16 21 21 F 1.39899 * 109.47182 * 300.05879 * 20 18 17 22 22 F 1.39902 * 109.46902 * 60.05598 * 20 18 17 23 23 F 1.39895 * 109.47413 * 180.02562 * 20 18 17 24 24 C 1.53097 * 109.41493 * 61.15611 * 18 17 16 25 25 H 0.96998 * 120.00073 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47508 * 60.00796 * 9 7 2 27 27 H 1.08996 * 109.47385 * 299.99860 * 9 7 2 28 28 H 1.08991 * 109.47162 * 60.00312 * 10 9 7 29 29 H 1.08996 * 109.47089 * 299.99986 * 10 9 7 30 30 H 1.09004 * 109.46772 * 60.00318 * 11 10 9 31 31 H 1.08997 * 109.47180 * 300.00418 * 11 10 9 32 32 H 1.00897 * 111.00056 * 56.05256 * 12 11 10 33 33 H 1.09002 * 109.52410 * 182.79604 * 15 13 12 34 34 H 1.09004 * 109.52533 * 302.92250 * 15 13 12 35 35 H 1.09007 * 109.48127 * 177.62276 * 16 15 13 36 36 H 1.09000 * 109.48171 * 297.66002 * 16 15 13 37 37 H 1.08995 * 109.52587 * 182.48591 * 24 18 17 38 38 H 1.09001 * 109.52108 * 62.29836 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0018 13 6 1.7347 -7.3950 -0.0030 14 1 0.8225 -7.3158 0.5885 15 6 1.3802 -7.7844 -1.4415 16 6 2.6697 -7.9675 -2.2461 17 8 3.4841 -8.9605 -1.6164 18 6 3.8858 -8.6289 -0.2857 19 1 4.4444 -7.6930 -0.2970 20 6 4.7709 -9.7447 0.2732 21 9 4.0539 -10.9459 0.2872 22 9 5.9052 -9.8881 -0.5330 23 9 5.1635 -9.4201 1.5761 24 6 2.6444 -8.4718 0.5964 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8915 31 1 0.8533 -5.0451 0.8885 32 1 3.0697 -6.0370 0.7796 33 1 0.8173 -8.7178 -1.4380 34 1 0.7772 -6.9970 -1.8939 35 1 2.4238 -8.2857 -3.2593 36 1 3.2123 -7.0229 -2.2832 37 1 2.9463 -8.1757 1.6009 38 1 2.1070 -9.4191 0.6410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348105116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -220.569257 kcal Electronic energy + Delta-G solvation = -22646.511640 eV Core-core repulsion = 18687.015906 eV Total energy + Delta-G solvation = -3959.495734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.29655 -47.83384 -47.74896 -39.93837 -36.51348 -34.02613 -32.46689 -32.10633 -30.05014 -27.21392 -25.79852 -24.29338 -22.96761 -22.46318 -20.27203 -19.79355 -18.73424 -18.44554 -18.21177 -16.38105 -16.22602 -15.97669 -15.66825 -15.03715 -14.67518 -14.61797 -14.48673 -14.38012 -14.20747 -14.05909 -13.91915 -13.89162 -13.39385 -12.85551 -12.54567 -12.36124 -12.22172 -11.69808 -11.64790 -11.47065 -11.05409 -10.92183 -10.67904 -10.59988 -10.46551 -9.94292 -9.72377 -9.38950 -9.08524 -8.38597 -8.36018 -6.02869 -4.05075 2.29212 3.16354 3.29289 3.36944 3.41190 3.56255 3.76688 4.09700 4.31268 4.43381 4.46276 4.62166 4.66567 4.85754 4.94367 5.24662 5.33225 5.37744 5.50110 5.55678 5.64703 5.70993 5.80241 5.85063 5.96207 6.23689 6.62105 6.66684 6.72013 7.06500 7.16513 7.43404 7.64391 7.78125 7.97139 8.40154 9.02373 9.59330 11.08563 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.003105 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.714771 B = 9016.287432 C = 9359.281614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.690 5.690 13 C 0.086 3.914 14 H 0.057 0.943 15 C -0.145 4.145 16 C 0.071 3.929 17 O -0.370 6.370 18 C 0.058 3.942 19 H 0.111 0.889 20 C 0.461 3.539 21 F -0.178 7.178 22 F -0.177 7.177 23 F -0.177 7.177 24 C -0.155 4.155 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.339 0.661 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 -20.783 -0.291 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.322 5.322 13 C -0.024 4.024 14 H 0.075 0.925 15 C -0.184 4.184 16 C -0.004 4.004 17 O -0.289 6.289 18 C -0.002 4.002 19 H 0.129 0.871 20 C 0.407 3.593 21 F -0.159 7.159 22 F -0.158 7.158 23 F -0.158 7.158 24 C -0.193 4.193 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.711 -20.857 -1.055 21.651 hybrid contribution 0.067 1.004 1.178 1.549 sum 5.778 -19.854 0.123 20.678 Atomic orbital electron populations 1.69976 1.06071 1.26497 1.51041 1.25036 0.94852 0.99312 0.95340 0.86540 0.80144 0.83769 0.77579 1.19711 1.20998 1.21038 1.21284 0.93086 0.91029 1.50330 0.92618 1.19065 0.93996 0.91408 0.97104 1.21628 0.99202 0.92927 1.00750 1.22185 0.94029 0.90576 1.00066 1.60664 1.20593 1.01123 1.49822 1.21491 0.95703 0.88984 0.96228 0.92485 1.22194 0.98433 1.02071 0.95677 1.22667 0.90394 0.92058 0.95300 1.87891 1.70349 1.45914 1.24731 1.22985 0.95707 0.95174 0.86321 0.87092 1.20326 0.79795 0.83298 0.75871 1.93184 1.77745 1.48746 1.96237 1.93205 1.53316 1.96157 1.73153 1.93197 1.91555 1.92618 1.38441 1.22419 0.96135 1.01470 0.99255 0.93069 0.96595 0.96835 0.93615 0.92549 0.91346 0.95503 0.84227 0.91030 0.89926 0.88466 0.90660 0.89554 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.58 5.46 -17.81 -0.10 1.49 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.08 5.41 -26.73 -0.14 -2.23 16 11 C 0.06 0.92 5.49 -3.83 -0.02 0.90 16 12 N -0.69 -8.43 5.09 -106.53 -0.54 -8.98 16 13 C 0.09 0.89 2.85 -67.53 -0.19 0.70 16 14 H 0.06 0.61 7.81 -51.92 -0.41 0.20 16 15 C -0.15 -1.44 5.74 -26.59 -0.15 -1.59 16 16 C 0.07 0.72 6.69 37.20 0.25 0.97 16 17 O -0.37 -4.20 10.30 -35.23 -0.36 -4.56 16 18 C 0.06 0.59 2.46 -26.68 -0.07 0.52 16 19 H 0.11 1.11 7.75 -51.93 -0.40 0.70 16 20 C 0.46 4.91 2.85 37.16 0.11 5.02 16 21 F -0.18 -2.00 16.70 2.25 0.04 -1.97 16 22 F -0.18 -2.08 17.26 2.25 0.04 -2.04 16 23 F -0.18 -1.83 16.85 2.25 0.04 -1.79 16 24 C -0.15 -1.42 4.56 -26.59 -0.12 -1.54 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.08 7.40 -51.93 -0.38 0.70 16 31 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.34 3.90 8.32 -39.29 -0.33 3.57 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.86 7.40 -51.93 -0.38 0.47 16 35 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.08 0.84 7.75 -51.93 -0.40 0.43 16 37 H 0.09 0.71 7.81 -51.93 -0.41 0.31 16 38 H 0.09 0.79 7.74 -51.93 -0.40 0.39 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -29.69 320.89 -6.74 -36.43 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.61 Total: -2.23 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.89 Total: -10.19 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.19 Total: -34.97 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.36 Total: -4.56 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.69 -6.74 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348105116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.136 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds