Wall clock time and date at job start Tue Mar 31 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99779 * 2 1 4 4 H 1.48503 * 109.46991 * 239.99312 * 3 2 1 5 5 H 1.48493 * 109.47405 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47037 * 120.00045 * 3 2 1 7 7 C 1.37875 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00148 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.52988 * 109.47492 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47321 * 180.02562 * 11 10 9 13 13 C 1.46908 * 111.00023 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.54062 * 34.82416 * 13 12 11 15 15 C 1.53167 * 109.54596 * 274.55515 * 13 12 11 16 16 C 1.53093 * 109.16745 * 183.15150 * 15 13 12 17 17 O 1.42911 * 109.42137 * 57.60321 * 16 15 13 18 18 C 1.42900 * 114.09545 * 298.86348 * 17 16 15 19 19 H 1.09005 * 109.48629 * 301.14840 * 18 17 16 20 20 C 1.53006 * 109.47835 * 181.13027 * 18 17 16 21 21 F 1.39900 * 109.46764 * 300.02021 * 20 18 17 22 22 F 1.39897 * 109.47129 * 60.02000 * 20 18 17 23 23 F 1.39903 * 109.46814 * 180.02562 * 20 18 17 24 24 C 1.53089 * 109.42709 * 61.14260 * 18 17 16 25 25 H 0.97000 * 120.00444 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46995 * 59.99462 * 9 7 2 27 27 H 1.09000 * 109.46540 * 299.99949 * 9 7 2 28 28 H 1.08998 * 109.47085 * 59.99372 * 10 9 7 29 29 H 1.09002 * 109.46781 * 300.00002 * 10 9 7 30 30 H 1.08998 * 109.47296 * 59.99712 * 11 10 9 31 31 H 1.09002 * 109.47282 * 299.99907 * 11 10 9 32 32 H 1.00901 * 111.00630 * 56.04766 * 12 11 10 33 33 H 1.09001 * 109.52381 * 303.06107 * 15 13 12 34 34 H 1.09005 * 109.52447 * 63.18434 * 15 13 12 35 35 H 1.09001 * 109.48467 * 177.59119 * 16 15 13 36 36 H 1.09004 * 109.47920 * 297.61978 * 16 15 13 37 37 H 1.09001 * 109.52756 * 62.29945 * 24 18 17 38 38 H 1.09000 * 109.52293 * 182.42725 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4349 -6.1035 0.0018 13 6 1.7346 -7.3949 0.0030 14 1 0.8194 -7.3139 -0.5834 15 6 1.3900 -7.7896 1.4423 16 6 0.7315 -9.1717 1.4406 17 8 1.6135 -10.1176 0.8326 18 6 1.9335 -9.8253 -0.5291 19 1 1.0173 -9.7918 -1.1188 20 6 2.8560 -10.9139 -1.0814 21 9 4.0319 -10.9567 -0.3246 22 9 2.2102 -12.1528 -1.0101 23 9 3.1696 -10.6273 -2.4144 24 6 2.6403 -8.4696 -0.6065 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8903 28 1 2.8720 -3.6043 0.8904 29 1 2.8719 -3.6043 -0.8895 30 1 0.8533 -5.0451 -0.8885 31 1 0.8540 -5.0446 0.8914 32 1 3.0698 -6.0362 0.7831 33 1 2.3012 -7.8210 2.0396 34 1 0.7019 -7.0579 1.8659 35 1 0.5228 -9.4763 2.4661 36 1 -0.2007 -9.1295 0.8771 37 1 3.5768 -8.5147 -0.0507 38 1 2.8465 -8.2252 -1.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348105122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:12 Heat of formation + Delta-G solvation = -221.797654 kcal Electronic energy + Delta-G solvation = -22294.193661 eV Core-core repulsion = 18334.644659 eV Total energy + Delta-G solvation = -3959.549001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.35330 -47.88799 -47.80855 -40.01129 -36.74705 -34.04631 -32.56659 -32.17028 -30.12742 -27.24367 -25.88610 -23.92730 -23.06555 -22.10388 -21.00497 -20.04453 -18.82020 -18.53378 -18.21415 -16.52111 -16.37000 -15.94982 -15.53383 -15.01391 -14.73369 -14.64483 -14.54300 -14.44033 -14.25677 -14.11122 -13.97129 -13.92850 -13.64674 -13.17611 -12.47751 -12.29029 -11.87603 -11.80847 -11.74897 -11.51155 -11.25156 -10.87656 -10.76441 -10.62932 -10.55290 -10.20858 -9.74451 -9.36279 -9.09765 -8.36537 -8.30175 -6.01714 -4.04015 2.18017 3.01741 3.32537 3.36767 3.39423 3.43923 3.66760 4.15915 4.19075 4.39091 4.45668 4.50819 4.56165 4.70552 4.86151 5.00324 5.19774 5.32658 5.34210 5.43466 5.55959 5.70706 5.74124 5.87601 5.89436 6.23955 6.48189 6.65390 6.68621 7.08296 7.20492 7.48599 7.65075 7.79461 7.98158 8.41346 9.02937 9.60193 11.09701 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.038921 B = 0.002731 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.239381 B =10251.556139 C =10588.798767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.059 3.941 12 N -0.683 5.683 13 C 0.091 3.909 14 H 0.082 0.918 15 C -0.191 4.191 16 C 0.069 3.931 17 O -0.366 6.366 18 C 0.049 3.951 19 H 0.102 0.898 20 C 0.466 3.534 21 F -0.174 7.174 22 F -0.178 7.178 23 F -0.174 7.174 24 C -0.143 4.143 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.341 0.659 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 -22.976 0.414 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.069 4.069 12 N -0.313 5.313 13 C -0.020 4.020 14 H 0.100 0.900 15 C -0.230 4.230 16 C -0.007 4.007 17 O -0.285 6.285 18 C -0.011 4.011 19 H 0.120 0.880 20 C 0.411 3.589 21 F -0.156 7.156 22 F -0.160 7.160 23 F -0.155 7.155 24 C -0.181 4.181 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.204 -23.004 -0.193 23.110 hybrid contribution 0.101 0.985 0.752 1.243 sum 2.305 -22.020 0.559 22.147 Atomic orbital electron populations 1.69947 1.06077 1.26726 1.50890 1.25025 0.94852 0.99281 0.95319 0.86649 0.79580 0.83076 0.78656 1.20192 1.21298 1.20251 1.21219 0.93040 0.91062 1.50571 0.92705 1.19053 0.93977 0.91363 0.97080 1.21631 0.99234 0.92899 1.00822 1.22177 0.94097 0.90678 0.99950 1.60583 1.20017 1.00652 1.50007 1.21494 0.96479 0.89846 0.94195 0.89959 1.23032 1.02836 0.97846 0.99322 1.22659 0.91419 0.87915 0.98739 1.87928 1.67878 1.49975 1.22749 1.23144 0.98040 0.92841 0.87054 0.87994 1.20136 0.80402 0.82411 0.75918 1.93202 1.50006 1.96546 1.75801 1.93202 1.81223 1.45516 1.96023 1.93215 1.93419 1.93407 1.35487 1.22248 1.00144 0.91257 1.04449 0.92951 0.96599 0.96841 0.93608 0.92476 0.91392 0.95579 0.84040 0.90366 0.89913 0.87753 0.92293 0.89521 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.16 5.41 -26.74 -0.14 -2.30 16 11 C 0.06 0.95 5.49 -3.83 -0.02 0.92 16 12 N -0.68 -8.95 6.26 -106.54 -0.67 -9.62 16 13 C 0.09 0.95 2.55 -67.53 -0.17 0.77 16 14 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 15 C -0.19 -1.74 5.39 -26.60 -0.14 -1.88 16 16 C 0.07 0.55 6.84 37.21 0.25 0.81 16 17 O -0.37 -3.65 10.30 -35.23 -0.36 -4.01 16 18 C 0.05 0.45 2.62 -26.68 -0.07 0.38 16 19 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 20 C 0.47 4.66 2.85 37.16 0.11 4.77 16 21 F -0.17 -1.95 16.70 2.25 0.04 -1.91 16 22 F -0.18 -1.90 17.26 2.25 0.04 -1.86 16 23 F -0.17 -1.74 16.85 2.25 0.04 -1.70 16 24 C -0.14 -1.38 4.78 -26.59 -0.13 -1.51 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 31 H 0.03 0.41 7.54 -51.93 -0.39 0.02 16 32 H 0.34 4.26 8.44 -39.29 -0.33 3.93 16 33 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.08 0.77 7.57 -51.93 -0.39 0.38 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.89 7.74 -51.93 -0.40 0.49 16 38 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -30.17 323.14 -6.87 -37.03 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.67 Total: -2.16 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.87 Total: -11.11 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.07 Total: -35.74 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.36 Total: -4.01 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.17 -6.87 -37.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348105122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.763 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds