Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47252 * 2 1 4 4 H 1.08999 * 109.47112 * 51.88097 * 3 2 1 5 5 C 1.50699 * 109.47447 * 171.88239 * 3 2 1 6 6 H 1.08003 * 119.99919 * 120.00314 * 5 3 2 7 7 C 1.37873 * 119.99942 * 299.99394 * 5 3 2 8 8 N 1.31520 * 120.00067 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00009 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46869 * 90.00789 * 9 7 5 11 11 H 1.48507 * 109.47073 * 210.00201 * 9 7 5 12 12 H 1.48497 * 109.47196 * 330.00681 * 9 7 5 13 13 N 1.46903 * 109.47082 * 291.88357 * 3 2 1 14 14 C 1.46902 * 111.00200 * 130.74515 * 13 3 2 15 15 C 1.50698 * 109.46803 * 83.02026 * 14 13 3 16 16 C 1.32577 * 119.99849 * 126.99049 * 15 14 13 17 17 C 1.47795 * 120.00336 * 8.20688 * 16 15 14 18 18 C 1.39560 * 120.10664 * 44.70569 * 17 16 15 19 19 C 1.37937 * 119.92932 * 179.97438 * 18 17 16 20 20 C 1.38521 * 120.14599 * 0.02843 * 19 18 17 21 21 F 1.35102 * 119.89378 * 179.97438 * 20 19 18 22 22 C 1.38762 * 120.21148 * 359.67509 * 20 19 18 23 23 F 1.35103 * 119.96925 * 180.30027 * 22 20 19 24 24 C 1.38147 * 120.06996 * 0.60458 * 22 20 19 25 25 H 1.08998 * 109.47094 * 306.22412 * 1 2 3 26 26 H 1.08994 * 109.46811 * 66.23319 * 1 2 3 27 27 H 1.08995 * 109.46722 * 186.22923 * 1 2 3 28 28 H 1.09001 * 109.47228 * 239.99840 * 2 1 3 29 29 H 1.09006 * 109.47481 * 119.99495 * 2 1 3 30 30 H 0.96996 * 120.00291 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99875 * 6.79130 * 13 3 2 32 32 H 1.09000 * 109.46944 * 323.01903 * 14 13 3 33 33 H 1.08997 * 109.46979 * 203.01604 * 14 13 3 34 34 H 1.08002 * 119.99885 * 306.98635 * 15 14 13 35 35 H 1.08001 * 119.99732 * 188.20947 * 16 15 14 36 36 H 1.08008 * 120.03575 * 359.96444 * 18 17 16 37 37 H 1.08005 * 119.92701 * 180.02562 * 19 18 17 38 38 H 1.08005 * 120.07084 * 179.70282 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5631 1.9965 0.8085 5 6 3.5336 1.4473 0.2006 6 1 4.1781 1.8781 -0.5514 7 6 4.0773 0.9019 1.3442 8 7 3.2925 0.3770 2.2599 9 14 5.9287 0.9072 1.5926 10 1 6.3304 2.1529 2.2942 11 1 6.3220 -0.2694 2.4089 12 1 6.6055 0.8424 0.2724 13 7 1.7166 2.0762 -1.2852 14 6 1.0778 3.3834 -1.0817 15 6 2.1376 4.4302 -0.8537 16 6 2.1507 5.5317 -1.5914 17 6 1.0286 5.8202 -2.5089 18 6 -0.2884 5.6506 -2.0792 19 6 -1.3329 5.9214 -2.9384 20 6 -1.0776 6.3608 -4.2271 21 9 -2.1046 6.6240 -5.0646 22 6 0.2293 6.5373 -4.6585 23 9 0.4726 6.9719 -5.9145 24 6 1.2823 6.2633 -3.8073 25 1 -0.3633 0.6073 0.8290 26 1 -0.3633 0.4141 -0.9405 27 1 -0.3632 -1.0216 0.1115 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.6750 -0.0070 3.0643 31 1 1.1360 1.4740 -1.8494 32 1 0.4214 3.3356 -0.2129 33 1 0.4939 3.6437 -1.9645 34 1 2.8864 4.2831 -0.0894 35 1 2.9815 6.2183 -1.5218 36 1 -0.4894 5.3075 -1.0750 37 1 -2.3521 5.7905 -2.6057 38 1 2.2997 6.3961 -4.1447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348252932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -51.897062 kcal Electronic energy + Delta-G solvation = -21310.298041 eV Core-core repulsion = 17788.885707 eV Total energy + Delta-G solvation = -3521.412334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -49.52121 -48.59694 -39.30831 -36.73995 -34.37173 -32.22802 -31.23721 -30.68665 -28.91704 -26.91693 -24.63535 -23.31112 -22.87608 -22.05668 -19.93751 -19.04363 -17.77496 -17.16380 -16.72212 -16.38825 -16.28792 -15.37041 -15.02044 -14.85568 -14.65049 -14.46848 -14.14206 -13.95143 -13.49135 -13.05057 -12.89620 -12.56666 -12.52671 -12.05296 -11.85504 -11.51535 -11.43168 -11.17753 -10.84944 -10.80553 -10.55909 -9.94477 -9.75150 -9.68403 -9.56013 -9.20687 -8.99577 -8.36127 -8.18391 -7.32485 -5.99730 -4.03549 0.71378 0.90942 2.46018 3.29644 3.37156 3.38905 3.41792 3.71308 4.24995 4.42312 4.48136 4.67734 4.90775 5.03727 5.26870 5.29879 5.53749 5.63726 5.68594 5.74282 5.80846 5.91713 6.02825 6.07762 6.09534 6.13921 6.34113 6.39864 6.64151 6.75324 6.89186 6.96991 7.03402 7.13563 7.34809 7.72480 7.89041 8.25246 8.41647 8.63261 9.05040 9.61707 11.05364 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.003783 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.851053 B = 7400.177104 C = 8116.549172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.216 3.784 4 H 0.016 0.984 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.074 3.926 15 C -0.061 4.061 16 C -0.181 4.181 17 C -0.006 4.006 18 C -0.097 4.097 19 C -0.124 4.124 20 C 0.051 3.949 21 F -0.134 7.134 22 C 0.068 3.932 23 F -0.133 7.133 24 C -0.124 4.124 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.259 0.741 31 H 0.325 0.675 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 10.257 -7.991 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.109 3.891 4 H 0.034 0.966 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.055 4.055 15 C -0.080 4.080 16 C -0.200 4.200 17 C -0.006 4.006 18 C -0.115 4.115 19 C -0.143 4.143 20 C 0.031 3.969 21 F -0.113 7.113 22 C 0.048 3.952 23 F -0.111 7.111 24 C -0.143 4.143 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.323 10.439 -7.980 15.043 hybrid contribution 0.036 -0.247 0.125 0.279 sum -7.287 10.192 -7.856 14.788 Atomic orbital electron populations 1.21866 0.99482 0.99780 0.99462 1.22004 0.91422 1.01126 1.03168 1.19347 0.95875 0.89739 0.84182 0.96645 1.21272 0.91570 1.36736 1.03218 0.91934 1.24972 0.97843 0.95698 0.96124 1.69865 1.34384 1.40241 1.09263 0.86581 0.85875 0.77368 0.78067 1.20886 1.21441 1.19924 1.60619 1.47048 1.03013 1.20571 1.21337 0.93651 0.91292 0.99252 1.23664 0.97830 0.91761 0.94719 1.21364 0.97975 1.00915 0.99722 1.19032 0.93865 0.95173 0.92519 1.21390 0.90963 0.98713 1.00466 1.20994 1.01267 1.00713 0.91277 1.17712 0.82845 1.06326 0.89994 1.91503 1.57199 1.91947 1.70653 1.17601 0.92500 1.03748 0.81333 1.91514 1.94997 1.87280 1.37344 1.21222 0.98672 1.01294 0.93116 0.93785 0.94918 0.94399 0.94269 0.88017 0.93102 0.85754 0.94306 0.91659 0.85276 0.85848 0.83980 0.83799 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.14 -3.09 5.12 -26.73 -0.14 -3.22 16 3 C 0.22 5.00 1.96 -68.86 -0.14 4.86 16 4 H 0.02 0.40 7.16 -51.93 -0.37 0.03 16 5 C -0.49 -12.77 8.84 -34.44 -0.30 -13.07 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.05 1.43 5.28 -17.82 -0.09 1.33 16 8 N -0.90 -24.58 11.29 55.43 0.63 -23.96 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.40 6.31 -109.22 -0.69 -14.09 16 14 C 0.07 1.21 4.81 -4.98 -0.02 1.19 16 15 C -0.06 -0.97 9.60 -36.21 -0.35 -1.32 16 16 C -0.18 -2.41 9.75 -37.58 -0.37 -2.77 16 17 C -0.01 -0.07 4.91 -105.02 -0.52 -0.58 16 18 C -0.10 -1.09 7.44 -39.20 -0.29 -1.38 16 19 C -0.12 -1.31 10.01 -39.59 -0.40 -1.71 16 20 C 0.05 0.63 7.31 -39.28 -0.29 0.34 16 21 F -0.13 -1.74 17.17 2.25 0.04 -1.70 16 22 C 0.07 0.86 7.30 -39.42 -0.29 0.58 16 23 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 24 C -0.12 -1.48 9.76 -39.14 -0.38 -1.87 16 25 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 26 H 0.03 0.53 7.13 -51.93 -0.37 0.16 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 2.59 5.89 -51.93 -0.31 2.29 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.32 5.95 7.09 -39.29 -0.28 5.67 16 32 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 33 H 0.07 0.95 5.14 -51.93 -0.27 0.68 16 34 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.14 1.46 7.04 -52.48 -0.37 1.09 16 37 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -27.26 324.30 -8.18 -35.44 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.85 Total: 5.36 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -3.21 Total: -19.99 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.06 Total: -38.05 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.26 -8.18 -35.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348252932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.460 kcal (2) G-P(sol) polarization free energy of solvation -27.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds