Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 H 1.09000 * 109.46497 * 183.43127 * 3 2 1 5 5 C 1.50699 * 109.46998 * 63.43652 * 3 2 1 6 6 H 1.08001 * 119.99547 * 240.00218 * 5 3 2 7 7 C 1.37882 * 120.00214 * 59.99842 * 5 3 2 8 8 N 1.31511 * 120.00034 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99921 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46934 * 119.99734 * 9 7 5 12 12 H 1.48495 * 109.47213 * 240.00225 * 9 7 5 13 13 N 1.46894 * 109.47231 * 303.43182 * 3 2 1 14 14 C 1.46895 * 111.00279 * 279.47482 * 13 3 2 15 15 C 1.50703 * 109.47283 * 175.00356 * 14 13 3 16 16 C 1.32572 * 119.99723 * 126.95954 * 15 14 13 17 17 C 1.47798 * 120.00593 * 8.81415 * 16 15 14 18 18 C 1.39558 * 120.10924 * 216.82458 * 17 16 15 19 19 C 1.37940 * 119.92600 * 179.74446 * 18 17 16 20 20 C 1.38526 * 120.14341 * 0.53760 * 19 18 17 21 21 F 1.35099 * 119.89385 * 179.76155 * 20 19 18 22 22 C 1.38764 * 120.21612 * 359.73710 * 20 19 18 23 23 F 1.35092 * 119.96855 * 180.02562 * 22 20 19 24 24 C 1.38149 * 120.06928 * 359.97438 * 22 20 19 25 25 H 1.09006 * 109.47132 * 175.01884 * 1 2 3 26 26 H 1.08992 * 109.47089 * 55.01916 * 1 2 3 27 27 H 1.08995 * 109.47027 * 295.01365 * 1 2 3 28 28 H 1.09001 * 109.47151 * 119.99913 * 2 1 3 29 29 H 1.08995 * 109.47095 * 239.99523 * 2 1 3 30 30 H 0.97000 * 120.00008 * 179.97438 * 8 7 5 31 31 H 1.00897 * 111.00241 * 155.51056 * 13 3 2 32 32 H 1.09007 * 109.46595 * 295.00078 * 14 13 3 33 33 H 1.09001 * 109.47408 * 55.00052 * 14 13 3 34 34 H 1.07996 * 119.99958 * 306.95743 * 15 14 13 35 35 H 1.08005 * 119.99524 * 188.82033 * 16 15 14 36 36 H 1.08001 * 120.03500 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.92718 * 180.27396 * 19 18 17 38 38 H 1.07995 * 120.07138 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4430 -0.0615 5 6 1.6084 2.1279 1.2708 6 1 0.9833 3.0074 1.2245 7 6 2.0114 1.6321 2.4927 8 7 2.7729 0.5614 2.5491 9 14 1.4770 2.4821 4.0679 10 1 0.6310 3.6562 3.7343 11 1 0.6981 1.5327 4.9029 12 1 2.6763 2.9329 4.8186 13 7 1.4839 2.1585 -1.1558 14 6 2.2388 1.8521 -2.3781 15 6 1.5681 2.5043 -3.5596 16 6 2.2677 3.2851 -4.3710 17 6 3.7375 3.3631 -4.2364 18 6 4.3957 4.5767 -4.4404 19 6 5.7671 4.6463 -4.3086 20 6 6.4933 3.5119 -3.9852 21 9 7.8367 3.5848 -3.8622 22 6 5.8455 2.3009 -3.7867 23 9 6.5586 1.1979 -3.4710 24 6 4.4718 2.2224 -3.9106 25 1 -0.3634 -1.0238 -0.0892 26 1 -0.3633 0.5891 -0.8419 27 1 -0.3633 0.4345 0.9312 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.0568 0.2128 3.4086 31 1 1.4575 3.1529 -0.9867 32 1 3.2558 2.2325 -2.2819 33 1 2.2671 0.7726 -2.5266 34 1 0.5177 2.3355 -3.7452 35 1 1.7635 3.8644 -5.1304 36 1 3.8316 5.4612 -4.6967 37 1 6.2761 5.5864 -4.4621 38 1 3.9676 1.2799 -3.7565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348252940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -49.474823 kcal Electronic energy + Delta-G solvation = -21593.981349 eV Core-core repulsion = 18072.674051 eV Total energy + Delta-G solvation = -3521.307298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.45303 -48.52453 -39.37888 -36.65078 -34.59284 -32.17685 -30.93508 -30.59158 -29.12496 -26.70977 -24.65466 -23.24673 -22.87316 -22.54125 -19.41876 -19.05243 -17.74622 -17.19864 -16.91681 -16.35877 -16.26539 -15.24290 -14.94588 -14.83868 -14.58092 -14.52914 -14.07277 -13.81484 -13.29900 -13.16202 -12.98787 -12.58516 -12.19360 -12.07548 -11.92294 -11.52522 -11.39276 -11.00287 -10.95376 -10.64563 -10.40982 -10.05573 -9.82371 -9.66852 -9.39467 -9.07218 -8.79548 -8.48054 -8.22970 -7.25584 -6.02983 -4.08769 0.63955 0.92923 2.24579 3.27870 3.36145 3.38792 3.39933 3.74196 4.28606 4.39511 4.46920 4.58705 4.87726 4.93803 5.16823 5.28115 5.41604 5.56467 5.69659 5.76468 5.77934 5.87376 6.01533 6.13817 6.26415 6.47303 6.57102 6.65677 6.67943 6.79360 6.81955 7.19578 7.27297 7.44591 7.68856 7.77065 7.81846 8.26358 8.34807 8.62470 8.99739 9.56377 11.03001 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.004501 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.428808 B = 6219.808550 C = 6779.818943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.680 5.680 14 C 0.063 3.937 15 C -0.094 4.094 16 C -0.158 4.158 17 C -0.023 4.023 18 C -0.096 4.096 19 C -0.127 4.127 20 C 0.058 3.942 21 F -0.132 7.132 22 C 0.070 3.930 23 F -0.128 7.128 24 C -0.116 4.116 25 H 0.013 0.987 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.008 0.992 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 6.043 -15.369 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.311 5.311 14 C -0.066 4.066 15 C -0.112 4.112 16 C -0.176 4.176 17 C -0.024 4.024 18 C -0.114 4.114 19 C -0.146 4.146 20 C 0.038 3.962 21 F -0.111 7.111 22 C 0.050 3.950 23 F -0.106 7.106 24 C -0.134 4.134 25 H 0.032 0.968 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.216 5.390 -15.312 16.384 hybrid contribution 0.982 0.649 1.216 1.693 sum 3.198 6.039 -14.096 15.665 Atomic orbital electron populations 1.21445 0.97472 0.97206 1.01640 1.21475 0.94988 0.98277 0.99685 1.19122 0.92303 0.91264 0.86397 0.98432 1.21170 1.31397 1.12032 0.90235 0.92200 1.24894 0.95016 0.95010 0.99032 1.69887 1.35550 1.22277 1.25072 0.86514 0.78343 0.79591 0.83414 1.19755 1.20983 1.21150 1.60603 1.54686 1.13009 1.02816 1.21514 0.95030 0.99965 0.90075 1.23636 1.00319 0.93608 0.93664 1.21498 0.90586 1.02637 1.02925 1.18947 0.94232 0.92030 0.97154 1.21175 0.93030 0.97747 0.99464 1.20966 0.94620 0.97222 1.01753 1.17759 0.77811 0.93996 1.06647 1.91512 1.28925 1.96919 1.93730 1.17595 0.90179 0.82458 1.04804 1.91541 1.77978 1.50730 1.90383 1.21459 0.90795 1.00983 1.00209 0.96794 0.93265 0.93050 0.89260 0.97285 0.92976 0.85154 0.94380 0.90603 0.85857 0.85649 0.84191 0.83824 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.51 37.16 0.35 -2.28 16 2 C -0.11 -2.53 5.52 -26.73 -0.15 -2.68 16 3 C 0.22 5.29 2.29 -68.87 -0.16 5.13 16 4 H 0.00 -0.05 7.93 -51.93 -0.41 -0.46 16 5 C -0.51 -13.54 7.59 -34.44 -0.26 -13.81 16 6 H 0.06 1.58 7.69 -52.49 -0.40 1.18 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -25.18 11.30 55.43 0.63 -24.55 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -13.63 5.25 -109.22 -0.57 -14.21 16 14 C 0.06 1.05 4.21 -4.98 -0.02 1.03 16 15 C -0.09 -1.21 9.75 -36.21 -0.35 -1.56 16 16 C -0.16 -1.75 9.79 -37.58 -0.37 -2.11 16 17 C -0.02 -0.28 5.17 -105.02 -0.54 -0.82 16 18 C -0.10 -0.98 9.78 -39.20 -0.38 -1.36 16 19 C -0.13 -1.35 10.01 -39.58 -0.40 -1.75 16 20 C 0.06 0.78 7.31 -39.28 -0.29 0.49 16 21 F -0.13 -1.87 17.17 2.25 0.04 -1.83 16 22 C 0.07 1.01 7.30 -39.42 -0.29 0.73 16 23 F -0.13 -2.04 17.17 2.25 0.04 -2.00 16 24 C -0.12 -1.56 7.29 -39.13 -0.29 -1.85 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 1.02 7.35 -51.93 -0.38 0.64 16 27 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 28 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 29 H 0.01 0.19 7.21 -51.93 -0.37 -0.18 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.33 6.59 8.38 -39.29 -0.33 6.26 16 32 H 0.04 0.66 4.82 -51.92 -0.25 0.41 16 33 H 0.08 1.31 6.92 -51.93 -0.36 0.95 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.15 2.01 6.27 -52.49 -0.33 1.68 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -28.45 321.29 -8.07 -36.52 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.79 Total: 4.41 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.23 Total: -19.25 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.05 Total: -38.76 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.45 -8.07 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348252940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.953 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds