Wall clock time and date at job start Tue Mar 31 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 N 1.46506 * 109.46953 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00399 * 269.92929 * 4 3 2 6 6 H 1.08002 * 120.00103 * 146.27231 * 5 4 3 7 7 C 1.38814 * 120.00112 * 326.28458 * 5 4 3 8 8 N 1.31625 * 119.99452 * 337.18380 * 7 5 4 9 9 Si 1.86791 * 120.00286 * 157.19063 * 7 5 4 10 10 H 1.48507 * 109.47211 * 59.99303 * 9 7 5 11 11 H 1.48497 * 109.47346 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47125 * 299.99602 * 9 7 5 13 13 C 1.46509 * 119.99349 * 89.92866 * 4 3 2 14 14 C 1.50700 * 109.47017 * 269.99647 * 13 4 3 15 15 C 1.32607 * 119.99446 * 125.00277 * 14 13 4 16 16 C 1.47759 * 119.99625 * 180.02562 * 15 14 13 17 17 C 1.39548 * 120.13177 * 359.97438 * 16 15 14 18 18 C 1.37901 * 119.90623 * 179.97438 * 17 16 15 19 19 C 1.38620 * 120.17405 * 359.97438 * 18 17 16 20 20 F 1.35092 * 119.87368 * 180.02562 * 19 18 17 21 21 C 1.38499 * 120.25461 * 0.03931 * 19 18 17 22 22 C 1.38188 * 120.09691 * 359.95871 * 21 19 18 23 23 F 1.35101 * 120.08775 * 180.02562 * 22 21 19 24 24 H 1.09000 * 109.46982 * 60.00016 * 1 2 3 25 25 H 1.08995 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47556 * 300.00253 * 1 2 3 27 27 H 1.08994 * 109.47467 * 239.99921 * 2 1 3 28 28 H 1.09000 * 109.46724 * 119.99499 * 2 1 3 29 29 H 1.08998 * 109.47178 * 60.00450 * 3 2 1 30 30 H 1.09000 * 109.47270 * 299.99808 * 3 2 1 31 31 H 0.96994 * 119.99141 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46390 * 150.00116 * 13 4 3 33 33 H 1.08994 * 109.47096 * 30.00474 * 13 4 3 34 34 H 1.07994 * 120.00794 * 305.00487 * 14 13 4 35 35 H 1.07994 * 119.99760 * 0.02562 * 15 14 13 36 36 H 1.08000 * 120.04967 * 0.25961 * 17 16 15 37 37 H 1.08001 * 119.91508 * 179.97438 * 18 17 16 38 38 H 1.08011 * 119.94943 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4442 1.1867 6 1 5.1329 0.9249 1.2665 7 6 3.6699 2.1130 2.2867 8 7 2.8030 3.0884 2.1147 9 14 4.2014 1.6289 4.0107 10 1 5.6699 1.8054 4.1439 11 1 3.5079 2.4894 5.0025 12 1 3.8495 0.2072 4.2563 13 6 4.2379 1.4408 -1.2680 14 6 4.4893 0.0193 -1.7009 15 6 4.0960 -0.3878 -2.9000 16 6 4.3420 -1.7817 -3.3243 17 6 4.9883 -2.6716 -2.4655 18 6 5.2150 -3.9716 -2.8661 19 6 4.8020 -4.3966 -4.1192 20 9 5.0267 -5.6716 -4.5052 21 6 4.1602 -3.5191 -4.9772 22 6 3.9274 -2.2140 -4.5870 23 9 3.3008 -1.3583 -5.4239 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 2.4404 3.5559 2.8833 32 1 5.1903 1.9548 -1.1379 33 1 3.6491 1.9536 -2.0284 34 1 4.9896 -0.6677 -1.0346 35 1 3.5960 0.2993 -3.5664 36 1 5.3064 -2.3441 -1.4868 37 1 5.7155 -4.6604 -2.2017 38 1 3.8409 -3.8554 -5.9527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349975059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:38 Heat of formation + Delta-G solvation = -51.625762 kcal Electronic energy + Delta-G solvation = -21379.190731 eV Core-core repulsion = 17857.790161 eV Total energy + Delta-G solvation = -3521.400570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.02279 -50.00047 -39.94752 -38.21057 -35.46329 -34.12349 -32.93172 -31.82984 -30.46365 -27.37648 -27.07243 -24.69600 -23.94318 -22.83721 -21.78354 -20.45172 -19.26289 -18.59495 -18.06638 -17.21484 -16.99963 -16.82362 -16.64289 -16.32510 -15.87483 -15.51868 -15.44602 -15.12072 -14.90689 -14.54986 -14.09185 -13.72499 -13.52192 -13.27631 -13.17914 -13.07111 -12.78889 -12.59767 -12.45520 -12.32111 -12.18160 -11.97959 -11.81715 -11.65774 -11.31721 -10.91758 -10.48335 -10.07067 -9.00228 -8.59128 -7.78554 -5.39190 -0.35582 0.00109 1.42131 1.49273 1.51893 1.57682 2.51088 2.58506 2.82568 3.26018 3.37577 3.53821 3.63987 3.80115 3.87954 4.09934 4.24871 4.34917 4.49254 4.57095 4.69987 4.73099 4.79846 4.88187 4.90314 4.92576 5.04796 5.10047 5.13425 5.17815 5.31504 5.37488 5.56461 5.67847 5.70246 5.78539 5.83055 5.94153 6.48742 7.18963 7.88792 8.39676 9.16490 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.004056 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.183932 B = 6901.431245 C = 7318.815872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.143 3.857 4 N -0.596 5.596 5 C -0.264 4.264 6 H 0.062 0.938 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.162 3.838 14 C -0.106 4.106 15 C -0.152 4.152 16 C -0.086 4.086 17 C -0.069 4.069 18 C -0.148 4.148 19 C 0.111 3.889 20 F -0.135 7.135 21 C -0.184 4.184 22 C 0.114 3.886 23 F -0.136 7.136 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -13.224 -11.588 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.017 3.983 4 N -0.317 5.317 5 C -0.394 4.394 6 H 0.080 0.920 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.037 3.963 14 C -0.126 4.126 15 C -0.171 4.171 16 C -0.087 4.087 17 C -0.087 4.087 18 C -0.166 4.166 19 C 0.092 3.908 20 F -0.113 7.113 21 C -0.203 4.203 22 C 0.095 3.905 23 F -0.114 7.114 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.170 0.830 37 H 0.183 0.817 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.086 -13.087 -11.519 17.559 hybrid contribution 0.003 0.067 0.704 0.707 sum 2.089 -13.020 -10.815 17.054 Atomic orbital electron populations 1.21644 0.95337 1.01462 1.01267 1.21897 0.95583 0.99241 0.99888 1.20998 0.83017 0.94032 1.00231 1.44025 1.01483 1.85322 1.00827 1.19267 1.05632 1.25773 0.88745 0.91994 1.25728 1.00380 0.95395 1.01984 1.70108 1.34825 1.21370 1.29995 0.85538 0.78074 0.77593 0.80470 1.19953 1.22175 1.20647 1.20083 0.96235 0.91932 0.88061 1.24233 0.94641 0.99255 0.94501 1.21339 1.04776 0.93190 0.97817 1.19295 1.00711 0.95556 0.93106 1.21253 0.95747 0.91842 0.99813 1.21367 1.02549 0.97292 0.95439 1.17403 1.00119 0.79207 0.94081 1.91515 1.92667 1.35795 1.91369 1.21058 1.04373 0.91948 1.02950 1.17438 0.97195 0.87659 0.88243 1.91489 1.79823 1.69759 1.70348 0.92540 0.91955 0.93828 0.93205 0.94647 0.91298 0.96084 0.94005 0.92692 0.93417 0.87041 0.86466 0.82960 0.81675 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.91 71.98 0.71 -3.86 16 2 C -0.13 -5.00 6.26 30.59 0.19 -4.81 16 3 C 0.14 6.64 5.34 86.38 0.46 7.10 16 4 N -0.60 -28.54 2.44 -706.31 -1.72 -30.26 16 5 C -0.26 -13.84 9.49 84.03 0.80 -13.04 16 6 H 0.06 3.17 7.93 -2.91 -0.02 3.15 16 7 C -0.04 -2.04 4.96 84.86 0.42 -1.62 16 8 N -0.92 -52.61 11.29 21.65 0.24 -52.36 16 9 Si 0.95 43.38 29.61 68.60 2.03 45.41 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.16 6.44 6.15 85.63 0.53 6.97 16 14 C -0.11 -3.47 8.71 24.53 0.21 -3.26 16 15 C -0.15 -4.47 9.31 23.63 0.22 -4.25 16 16 C -0.09 -2.22 5.87 -20.08 -0.12 -2.34 16 17 C -0.07 -1.54 9.40 22.51 0.21 -1.33 16 18 C -0.15 -2.82 10.01 22.28 0.22 -2.60 16 19 C 0.11 2.25 7.30 22.42 0.16 2.41 16 20 F -0.13 -2.72 17.26 44.97 0.78 -1.95 16 21 C -0.18 -3.79 9.99 22.32 0.22 -3.57 16 22 C 0.11 2.80 7.28 22.62 0.16 2.97 16 23 F -0.14 -3.55 16.61 44.97 0.75 -2.80 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.88 7.57 -2.39 -0.02 1.86 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 3.71 5.29 -2.39 -0.01 3.69 16 30 H 0.02 0.94 7.90 -2.39 -0.02 0.92 16 31 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.05 2.23 8.04 -2.38 -0.02 2.21 16 33 H 0.05 1.82 7.57 -2.39 -0.02 1.80 16 34 H 0.11 3.56 6.03 -2.91 -0.02 3.54 16 35 H 0.12 3.45 7.55 -2.91 -0.02 3.43 16 36 H 0.15 3.23 6.16 -2.91 -0.02 3.22 16 37 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -58.35 329.52 7.55 -50.80 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.06 Total: 12.39 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.41 Total: -21.22 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.48 Total: -82.62 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 1.52 Total: -4.75 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -58.35 7.55 -50.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349975059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.823 kcal (2) G-P(sol) polarization free energy of solvation -58.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds