Wall clock time and date at job start Tue Mar 31 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99853 * 2 1 4 4 H 1.48500 * 109.47239 * 239.99494 * 3 2 1 5 5 H 1.48492 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46918 * 120.00160 * 3 2 1 7 7 C 1.37878 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00218 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47131 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46826 * 179.97438 * 10 9 7 12 12 C 1.46822 * 110.98498 * 294.20666 * 11 10 9 13 13 C 1.53039 * 109.51709 * 174.15795 * 12 11 10 14 14 C 1.53119 * 109.27547 * 59.18302 * 13 12 11 15 15 H 1.09001 * 109.52355 * 62.24934 * 14 13 12 16 16 C 1.53003 * 109.57193 * 182.40604 * 14 13 12 17 17 F 1.39901 * 109.47265 * 173.05733 * 16 14 13 18 18 F 1.39895 * 109.47390 * 293.06421 * 16 14 13 19 19 F 1.39900 * 109.46808 * 53.05945 * 16 14 13 20 20 C 1.53115 * 109.15972 * 302.34294 * 14 13 12 21 21 H 1.09000 * 109.53214 * 177.61825 * 20 14 13 22 22 C 1.53004 * 109.50403 * 297.71652 * 20 14 13 23 23 O 1.42900 * 109.46928 * 180.15307 * 22 20 14 24 24 C 1.46847 * 110.99634 * 169.99582 * 11 10 9 25 25 H 0.97000 * 120.00325 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47527 * 59.99493 * 9 7 2 27 27 H 1.09003 * 109.46978 * 299.99794 * 9 7 2 28 28 H 1.08999 * 109.47406 * 59.99731 * 10 9 7 29 29 H 1.09003 * 109.46772 * 299.99615 * 10 9 7 30 30 H 1.09003 * 109.46571 * 54.14570 * 12 11 10 31 31 H 1.09005 * 109.45805 * 294.16884 * 12 11 10 32 32 H 1.08994 * 109.50314 * 299.23630 * 13 12 11 33 33 H 1.09005 * 109.50039 * 179.12053 * 13 12 11 34 34 H 1.09002 * 109.46939 * 300.15032 * 22 20 14 35 35 H 1.08991 * 109.47036 * 60.15172 * 22 20 14 36 36 H 0.96703 * 113.99602 * 180.02562 * 23 22 20 37 37 H 1.09008 * 109.46284 * 65.82422 * 24 11 10 38 38 H 1.09001 * 109.46876 * 305.84450 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5108 -4.9342 0.0024 12 6 0.7606 -5.1076 1.2526 13 6 -0.1039 -6.3671 1.1596 14 6 0.7960 -7.5805 0.9100 15 1 1.4775 -7.7078 1.7512 16 6 -0.0662 -8.8351 0.7562 17 9 0.7409 -9.9115 0.3725 18 9 -0.6853 -9.1279 1.9760 19 9 -1.0426 -8.6128 -0.2208 20 6 1.6021 -7.3532 -0.3718 21 1 2.2759 -8.1948 -0.5326 22 6 0.6470 -7.2290 -1.5606 23 8 1.4001 -7.0205 -2.7570 24 6 2.4170 -6.0652 -0.2345 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5572 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8878 30 1 0.1216 -4.2398 1.4160 31 1 1.4584 -5.2066 2.0841 32 1 -0.8112 -6.2631 0.3369 33 1 -0.6488 -6.5041 2.0936 34 1 0.0624 -8.1443 -1.6542 35 1 -0.0234 -6.3845 -1.4014 36 1 0.8579 -6.9322 -3.5527 37 1 3.1070 -6.1596 0.6042 38 1 2.9811 -5.8929 -1.1511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352686983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:47 Heat of formation + Delta-G solvation = -210.718505 kcal Electronic energy + Delta-G solvation = -23587.644718 eV Core-core repulsion = 19628.576144 eV Total energy + Delta-G solvation = -3959.068574 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.31074 -47.78243 -47.72106 -39.49086 -36.32909 -34.67330 -32.76759 -31.13238 -29.65129 -27.23107 -25.51795 -24.07995 -22.78084 -22.45184 -20.15731 -19.29421 -18.55752 -18.34340 -17.51767 -17.19872 -16.39428 -15.54627 -14.88741 -14.80249 -14.64335 -14.48545 -14.41099 -14.11778 -13.98825 -13.91803 -13.81469 -13.49513 -13.10917 -12.83042 -12.48655 -12.41431 -12.07892 -11.84214 -11.27427 -11.16894 -10.93022 -10.73012 -10.60333 -10.50367 -10.48420 -9.82382 -9.64883 -9.34717 -9.14490 -8.33850 -7.75717 -6.00771 -4.03107 2.62164 3.32860 3.37449 3.39719 3.61999 3.79403 3.89860 4.22434 4.37601 4.49629 4.63563 4.78734 5.03150 5.10835 5.29360 5.35283 5.43991 5.49052 5.59130 5.67916 5.72665 5.83227 6.01392 6.15508 6.20527 6.23029 6.38558 6.49513 6.94846 7.44732 7.53294 7.76822 7.78246 7.87644 8.06197 8.42132 9.03791 9.60660 11.10533 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.004016 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.137405 B = 6970.992983 C = 7295.525453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.065 3.935 11 N -0.535 5.535 12 C 0.056 3.944 13 C -0.118 4.118 14 C -0.127 4.127 15 H 0.115 0.885 16 C 0.453 3.547 17 F -0.185 7.185 18 F -0.184 7.184 19 F -0.177 7.177 20 C -0.080 4.080 21 H 0.086 0.914 22 C 0.070 3.930 23 O -0.569 6.569 24 C 0.068 3.932 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.378 0.622 37 H 0.028 0.972 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -18.357 0.968 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.061 4.061 11 N -0.260 5.260 12 C -0.072 4.072 13 C -0.156 4.156 14 C -0.147 4.147 15 H 0.133 0.867 16 C 0.399 3.601 17 F -0.166 7.166 18 F -0.166 7.166 19 F -0.159 7.159 20 C -0.099 4.099 21 H 0.105 0.895 22 C -0.007 4.007 23 O -0.375 6.375 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.048 0.952 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.225 0.775 37 H 0.046 0.954 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.293 -18.286 1.008 18.316 hybrid contribution 0.417 0.647 0.355 0.847 sum 0.123 -17.639 1.363 17.692 Atomic orbital electron populations 1.69951 1.06017 1.26700 1.50601 1.24974 0.94814 0.99134 0.95270 0.86666 0.79590 0.83182 0.78600 1.20222 1.21283 1.20319 1.21154 0.92955 0.91077 1.50984 0.92867 1.19092 0.93947 0.90089 0.97713 1.22314 0.96730 0.87988 0.99100 1.61995 1.27616 1.02547 1.33841 1.22074 0.96945 0.97410 0.90764 1.21786 0.97905 0.92444 1.03418 1.22617 0.98139 0.91796 1.02156 0.86685 1.20728 0.79606 0.86260 0.73492 1.93171 1.73057 1.59108 1.91257 1.93174 1.84206 1.94438 1.44768 1.93104 1.65214 1.94637 1.62936 1.21176 0.97303 0.99833 0.91587 0.89543 1.22592 0.93154 1.00597 0.84385 1.86386 1.37755 1.96021 1.17296 1.21947 0.93463 0.89452 1.01189 0.92944 0.95704 0.96547 0.96201 0.91864 0.88529 0.95164 0.89466 0.90420 0.93286 0.91260 0.77546 0.95390 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 10 C 0.07 1.33 4.90 -3.82 -0.02 1.31 16 11 N -0.54 -9.12 3.93 -234.68 -0.92 -10.05 16 12 C 0.06 0.86 5.29 -3.85 -0.02 0.84 16 13 C -0.12 -1.45 4.79 -26.65 -0.13 -1.57 16 14 C -0.13 -1.42 2.13 -90.50 -0.19 -1.61 16 15 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 16 C 0.45 5.06 2.53 37.16 0.09 5.15 16 17 F -0.18 -2.12 16.60 2.25 0.04 -2.08 16 18 F -0.18 -2.10 17.12 2.25 0.04 -2.06 16 19 F -0.18 -2.08 13.24 2.25 0.03 -2.05 16 20 C -0.08 -0.99 2.28 -90.54 -0.21 -1.20 16 21 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 22 C 0.07 0.90 5.18 37.16 0.19 1.09 16 23 O -0.57 -7.53 12.99 -35.23 -0.46 -7.99 16 24 C 0.07 0.98 4.76 -3.83 -0.02 0.97 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.43 6.43 -51.93 -0.33 0.10 16 28 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.06 1.31 7.99 -51.93 -0.41 0.89 16 30 H 0.10 1.69 6.21 -51.93 -0.32 1.37 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 1.13 6.02 -51.93 -0.31 0.82 16 33 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.05 0.58 5.48 -51.93 -0.28 0.30 16 35 H 0.07 0.99 6.01 -51.93 -0.31 0.68 16 36 H 0.38 3.50 9.12 45.56 0.42 3.91 16 37 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.09 1.37 7.55 -51.93 -0.39 0.98 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -30.21 306.69 -6.21 -36.42 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.43 Total: 0.28 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.84 Total: -7.74 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.19 Total: -35.83 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.46 Total: -7.99 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.21 -6.21 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352686983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.300 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds