Wall clock time and date at job start Tue Mar 31 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48501 * 109.47508 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47259 * 300.00127 * 3 2 1 6 6 H 1.48500 * 109.47371 * 59.99981 * 3 2 1 7 7 C 1.37872 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99694 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46923 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46760 * 180.02562 * 10 9 7 12 12 C 1.46840 * 110.99880 * 66.05021 * 11 10 9 13 13 C 1.53039 * 109.52084 * 185.83685 * 12 11 10 14 14 C 1.53116 * 109.28044 * 300.81754 * 13 12 11 15 15 H 1.09007 * 109.52682 * 297.75482 * 14 13 12 16 16 C 1.52995 * 109.52678 * 177.56120 * 14 13 12 17 17 F 1.39898 * 109.46998 * 66.69793 * 16 14 13 18 18 F 1.39901 * 109.47473 * 186.69866 * 16 14 13 19 19 F 1.39904 * 109.47033 * 306.69561 * 16 14 13 20 20 C 1.53123 * 109.16041 * 57.65387 * 14 13 12 21 21 H 1.08995 * 109.51045 * 182.40620 * 20 14 13 22 22 C 1.53006 * 109.50079 * 62.32496 * 20 14 13 23 23 O 1.42893 * 109.47148 * 179.77312 * 22 20 14 24 24 C 1.46850 * 110.99485 * 190.25731 * 11 10 9 25 25 H 0.96997 * 119.99887 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47479 * 299.99752 * 9 7 2 27 27 H 1.08995 * 109.47151 * 60.00339 * 9 7 2 28 28 H 1.08996 * 109.47037 * 300.00263 * 10 9 7 29 29 H 1.09003 * 109.46478 * 60.00594 * 10 9 7 30 30 H 1.09001 * 109.46278 * 305.85313 * 12 11 10 31 31 H 1.09003 * 109.46445 * 65.82001 * 12 11 10 32 32 H 1.08999 * 109.50264 * 60.76243 * 13 12 11 33 33 H 1.09003 * 109.50045 * 180.88269 * 13 12 11 34 34 H 1.09004 * 109.46998 * 299.77783 * 22 20 14 35 35 H 1.09005 * 109.46615 * 59.77472 * 22 20 14 36 36 H 0.96698 * 113.99975 * 180.02562 * 23 22 20 37 37 H 1.08998 * 109.46429 * 294.17427 * 24 11 10 38 38 H 1.08997 * 109.45994 * 54.14577 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0015 11 7 1.5108 -4.9343 0.0020 12 6 0.7652 -5.1119 -1.2505 13 6 -0.0994 -6.3712 -1.1568 14 6 0.7996 -7.5837 -0.8999 15 1 1.4844 -7.7137 -1.7380 16 6 -0.0642 -8.8370 -0.7446 17 9 -0.6835 -9.1304 -1.9642 18 9 0.7415 -9.9140 -0.3597 19 9 -1.0403 -8.6125 0.2321 20 6 1.6008 -7.3522 0.3843 21 1 2.2742 -8.1932 0.5498 22 6 0.6412 -7.2252 1.5692 23 8 1.3898 -7.0145 2.7680 24 6 2.4162 -6.0645 0.2459 25 1 -0.4850 -0.8400 0.0004 26 1 0.6248 -2.5563 0.8919 27 1 0.6241 -2.5575 -0.8880 28 1 2.8713 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.1268 -4.2447 -1.4193 31 1 1.4661 -5.2134 -2.0792 32 1 -0.8098 -6.2646 -0.3370 33 1 -0.6407 -6.5113 -2.0924 34 1 -0.0283 -6.3808 1.4057 35 1 0.0560 -8.1402 1.6624 36 1 0.8446 -6.9252 3.5616 37 1 3.1092 -6.1615 -0.5897 38 1 2.9767 -5.8891 1.1640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352686984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:54 Heat of formation + Delta-G solvation = -214.720326 kcal Electronic energy + Delta-G solvation = -23631.775844 eV Core-core repulsion = 19672.533738 eV Total energy + Delta-G solvation = -3959.242106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -50.36175 -47.83544 -47.76828 -39.57328 -36.40960 -34.82897 -33.01269 -31.21038 -29.48194 -27.20955 -25.41962 -23.90001 -22.86925 -22.51071 -20.49858 -19.36415 -18.61308 -18.40079 -17.57688 -17.26355 -16.71991 -15.71376 -14.97912 -14.85711 -14.66739 -14.61063 -14.18695 -14.14461 -13.97886 -13.88186 -13.73053 -13.56862 -13.22689 -13.01833 -12.58688 -12.53860 -12.17993 -11.91431 -11.44166 -11.23368 -10.85405 -10.78086 -10.66191 -10.55500 -10.14299 -10.02996 -9.75740 -9.60905 -8.57340 -8.30709 -7.86823 -6.36319 -4.05083 2.56700 3.43888 3.47866 3.56298 3.61051 3.73473 3.84143 4.15619 4.32202 4.52998 4.58818 4.71865 4.96498 5.03241 5.22564 5.35432 5.41398 5.42198 5.50906 5.60396 5.65135 5.75680 5.93214 6.04185 6.11773 6.14638 6.26612 6.36943 6.79300 7.23611 7.36159 7.62073 7.67690 7.72684 8.23666 8.47262 8.89129 9.67120 11.04955 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.004031 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.780273 B = 6944.713902 C = 7268.432959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 1.074 2.926 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.016 3.984 10 C 0.072 3.928 11 N -0.537 5.537 12 C 0.056 3.944 13 C -0.118 4.118 14 C -0.128 4.128 15 H 0.116 0.884 16 C 0.454 3.546 17 F -0.184 7.184 18 F -0.184 7.184 19 F -0.177 7.177 20 C -0.080 4.080 21 H 0.087 0.913 22 C 0.070 3.930 23 O -0.569 6.569 24 C 0.068 3.932 25 H 0.270 0.730 26 H 0.016 0.984 27 H 0.007 0.993 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.378 0.622 37 H 0.029 0.971 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -18.752 -0.946 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.902 3.098 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.066 0.934 9 C -0.022 4.022 10 C -0.054 4.054 11 N -0.262 5.262 12 C -0.072 4.072 13 C -0.156 4.156 14 C -0.147 4.147 15 H 0.134 0.866 16 C 0.400 3.600 17 F -0.165 7.165 18 F -0.165 7.165 19 F -0.159 7.159 20 C -0.099 4.099 21 H 0.106 0.894 22 C -0.008 4.008 23 O -0.375 6.375 24 C -0.060 4.060 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.225 0.775 37 H 0.047 0.953 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.189 -17.160 -0.986 17.189 hybrid contribution 0.183 -1.997 -0.354 2.036 sum 0.372 -19.156 -1.339 19.207 Atomic orbital electron populations 1.70718 1.06881 1.30703 1.46722 1.25812 0.96539 1.02638 0.93777 0.83482 0.74436 0.74890 0.76957 1.21576 1.21400 1.21313 1.22064 0.94310 0.92024 1.55788 0.93371 1.19228 0.94610 0.91926 0.96413 1.22160 0.96394 0.87517 0.99340 1.62008 1.27955 1.02611 1.33592 1.22063 0.96963 0.97329 0.90827 1.21781 0.97902 0.92442 1.03427 1.22612 0.98140 0.91810 1.02157 0.86623 1.20705 0.79615 0.86211 0.73514 1.93177 1.84189 1.94420 1.44758 1.93174 1.73119 1.59023 1.91221 1.93103 1.65243 1.94597 1.62939 1.21180 0.97335 0.99799 0.91587 0.89433 1.22601 0.93179 1.00605 0.84372 1.86385 1.37775 1.95979 1.17315 1.21943 0.93433 0.89383 1.01263 0.91984 0.96600 0.97472 0.96007 0.91695 0.88890 0.95046 0.89488 0.90343 0.91393 0.93153 0.77514 0.95289 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.90 13.65 55.43 0.76 -27.15 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.60 -17.09 9.11 -34.44 -0.31 -17.41 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.02 0.39 4.22 -27.88 -0.12 0.27 16 10 C 0.07 1.50 4.90 -3.82 -0.02 1.48 16 11 N -0.54 -9.12 3.94 -234.66 -0.92 -10.05 16 12 C 0.06 0.85 5.29 -3.84 -0.02 0.83 16 13 C -0.12 -1.43 4.78 -26.65 -0.13 -1.55 16 14 C -0.13 -1.40 2.13 -90.50 -0.19 -1.59 16 15 H 0.12 1.12 8.14 -51.92 -0.42 0.69 16 16 C 0.45 5.00 2.53 37.16 0.09 5.09 16 17 F -0.18 -2.07 17.11 2.25 0.04 -2.03 16 18 F -0.18 -2.09 16.61 2.25 0.04 -2.05 16 19 F -0.18 -2.05 13.22 2.25 0.03 -2.02 16 20 C -0.08 -0.98 2.28 -90.53 -0.21 -1.19 16 21 H 0.09 1.02 7.75 -51.93 -0.40 0.61 16 22 C 0.07 0.89 5.18 37.16 0.19 1.08 16 23 O -0.57 -7.49 12.99 -35.23 -0.46 -7.95 16 24 C 0.07 0.98 4.77 -3.83 -0.02 0.97 16 25 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 26 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 27 H 0.01 0.19 6.30 -51.93 -0.33 -0.14 16 28 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.06 1.37 7.98 -51.93 -0.41 0.95 16 30 H 0.09 1.60 6.22 -51.93 -0.32 1.28 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.11 6.03 -51.93 -0.31 0.79 16 33 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.07 0.96 6.02 -51.93 -0.31 0.65 16 35 H 0.05 0.59 5.47 -51.93 -0.28 0.31 16 36 H 0.38 3.47 9.12 45.56 0.42 3.88 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 1.38 7.55 -51.93 -0.39 0.99 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -31.07 305.38 -6.20 -37.27 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.37 Total: 0.75 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.83 Total: -11.65 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.17 Total: -37.19 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.46 Total: -7.95 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.11 Total: -6.11 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.07 -6.20 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352686984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.453 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds