Wall clock time and date at job start Tue Mar 31 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00415 * 2 1 4 4 H 1.48505 * 109.46998 * 240.00369 * 3 2 1 5 5 H 1.48507 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47412 * 119.99931 * 3 2 1 7 7 C 1.37881 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99804 * 0.27258 * 7 2 1 10 10 C 1.53002 * 109.47223 * 179.72552 * 9 7 2 11 11 N 1.46899 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.46842 * 111.00108 * 294.20746 * 11 10 9 13 13 C 1.53039 * 109.52315 * 174.16318 * 12 11 10 14 14 C 1.53115 * 109.27647 * 59.18029 * 13 12 11 15 15 H 1.08999 * 109.57625 * 62.28589 * 14 13 12 16 16 C 1.53006 * 109.52193 * 182.44046 * 14 13 12 17 17 F 1.39901 * 109.47309 * 186.13124 * 16 14 13 18 18 F 1.39904 * 109.47134 * 306.13237 * 16 14 13 19 19 F 1.39900 * 109.47114 * 66.13255 * 16 14 13 20 20 C 1.53114 * 109.16417 * 302.34382 * 14 13 12 21 21 H 1.08999 * 109.53858 * 297.69828 * 20 14 13 22 22 C 1.52998 * 109.50527 * 177.59640 * 20 14 13 23 23 O 1.42908 * 109.47142 * 179.53644 * 22 20 14 24 24 C 1.46854 * 110.99557 * 169.99868 * 11 10 9 25 25 H 0.96993 * 119.99587 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47160 * 299.72741 * 9 7 2 27 27 H 1.09000 * 109.46930 * 59.72066 * 9 7 2 28 28 H 1.08998 * 109.46498 * 300.00192 * 10 9 7 29 29 H 1.08996 * 109.46860 * 59.99861 * 10 9 7 30 30 H 1.08999 * 109.46487 * 294.17932 * 12 11 10 31 31 H 1.09003 * 109.46519 * 54.15149 * 12 11 10 32 32 H 1.09002 * 109.50316 * 299.24048 * 13 12 11 33 33 H 1.08997 * 109.53374 * 179.14205 * 13 12 11 34 34 H 1.09003 * 109.47265 * 299.53566 * 22 20 14 35 35 H 1.08995 * 109.47105 * 59.53770 * 22 20 14 36 36 H 0.96701 * 113.99592 * 179.97438 * 23 22 20 37 37 H 1.09001 * 109.46235 * 305.85781 * 24 11 10 38 38 H 1.09003 * 109.45903 * 65.83735 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 -0.0051 10 6 2.2452 -3.6622 -0.0102 11 7 1.5106 -4.9343 -0.0163 12 6 0.7603 -5.1147 1.2330 13 6 -0.1040 -6.3737 1.1332 14 6 0.7960 -7.5856 0.8770 15 1 1.4775 -7.7186 1.7172 16 6 -0.0673 -8.8386 0.7157 17 9 0.7577 -9.9644 0.6213 18 9 -0.9105 -8.9699 1.8244 19 9 -0.8386 -8.7270 -0.4462 20 6 1.6020 -7.3514 -0.4036 21 1 0.9220 -7.2586 -1.2504 22 6 2.5479 -8.5314 -0.6349 23 8 3.2921 -8.3171 -1.8360 24 6 2.4169 -6.0640 -0.2593 25 1 -0.4849 0.8400 -0.0004 26 1 0.6243 -2.5608 0.8847 27 1 0.6243 -2.5530 -0.8953 28 1 2.8718 -3.6005 -0.8999 29 1 2.8719 -3.6082 0.8800 30 1 1.4580 -5.2181 2.0641 31 1 0.1212 -4.2479 1.4013 32 1 -0.8113 -6.2653 0.3110 33 1 -0.6495 -6.5162 2.0661 34 1 3.2344 -8.6173 0.2074 35 1 1.9678 -9.4497 -0.7259 36 1 3.9138 -9.0275 -2.0454 37 1 2.9810 -5.8866 -1.1750 38 1 3.1067 -6.1630 0.5789 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352686985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:02 Heat of formation + Delta-G solvation = -214.746133 kcal Electronic energy + Delta-G solvation = -23313.790864 eV Core-core repulsion = 19354.547640 eV Total energy + Delta-G solvation = -3959.243225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.30723 -47.82688 -47.67846 -39.33549 -36.77020 -34.69126 -32.76507 -31.39764 -29.67659 -27.18292 -25.58717 -24.09207 -22.48646 -22.18106 -20.18787 -19.86953 -18.54705 -18.40913 -17.79336 -17.23469 -16.46551 -15.42885 -15.17828 -14.71120 -14.63484 -14.51633 -14.38383 -14.15368 -13.95425 -13.90183 -13.81811 -13.55875 -13.31476 -12.84991 -12.79078 -12.25453 -12.06131 -11.63504 -11.26414 -11.15509 -11.04880 -10.89174 -10.69381 -10.51130 -10.44250 -10.02003 -9.82879 -9.34109 -9.13243 -8.32627 -7.77986 -5.99421 -4.01887 2.60916 3.33781 3.38340 3.40530 3.62267 3.72422 3.85903 4.13412 4.26147 4.49763 4.65580 4.81993 4.87170 5.07143 5.17253 5.28875 5.36542 5.42943 5.49410 5.57172 5.68200 5.72052 6.03340 6.11730 6.19717 6.21747 6.39931 6.49844 6.95099 7.44985 7.48366 7.53884 7.77708 7.88734 8.07610 8.43112 9.05009 9.61773 11.11909 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.003932 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.438497 B = 7120.044452 C = 7790.056434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.065 3.935 11 N -0.540 5.540 12 C 0.057 3.943 13 C -0.113 4.113 14 C -0.126 4.126 15 H 0.111 0.889 16 C 0.453 3.547 17 F -0.185 7.185 18 F -0.183 7.183 19 F -0.178 7.178 20 C -0.083 4.083 21 H 0.100 0.900 22 C 0.064 3.936 23 O -0.566 6.566 24 C 0.071 3.929 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.378 0.622 37 H 0.087 0.913 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -20.374 2.261 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.264 5.264 12 C -0.071 4.071 13 C -0.151 4.151 14 C -0.146 4.146 15 H 0.129 0.871 16 C 0.399 3.601 17 F -0.167 7.167 18 F -0.164 7.164 19 F -0.159 7.159 20 C -0.101 4.101 21 H 0.119 0.881 22 C -0.014 4.014 23 O -0.371 6.371 24 C -0.058 4.058 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.224 0.776 37 H 0.106 0.894 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.576 -19.703 1.868 19.854 hybrid contribution 1.230 0.080 0.743 1.440 sum 2.807 -19.623 2.611 19.994 Atomic orbital electron populations 1.69957 1.06014 1.26703 1.50544 1.24981 0.94820 0.99140 0.95272 0.86662 0.79583 0.83175 0.78585 1.20223 1.21275 1.20323 1.21152 0.92946 0.91066 1.51043 0.92859 1.19108 0.93967 0.90069 0.97815 1.22323 0.96742 0.87983 0.99123 1.62019 1.27649 1.02608 1.34164 1.22070 0.96899 0.97522 0.90618 1.21706 0.97734 0.92166 1.03498 1.22594 0.97885 0.92069 1.02020 0.87113 1.20735 0.79685 0.85908 0.73782 1.93080 1.71813 1.56099 1.95679 1.93175 1.73177 1.96439 1.53654 1.93190 1.76857 1.96102 1.49759 1.21218 0.97191 0.95393 0.96347 0.88137 1.22649 0.94033 0.97650 0.87107 1.86507 1.57967 1.49573 1.43049 1.21947 0.93341 0.89196 1.01283 0.92933 0.96486 0.95614 0.91867 0.96150 0.95208 0.88476 0.89556 0.90169 0.93590 0.91963 0.77554 0.89415 0.95511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.71 4.90 -27.88 -0.14 0.57 16 10 C 0.06 1.35 4.90 -3.82 -0.02 1.33 16 11 N -0.54 -9.52 4.66 -234.66 -1.09 -10.61 16 12 C 0.06 0.89 5.29 -3.84 -0.02 0.87 16 13 C -0.11 -1.43 5.10 -26.65 -0.14 -1.57 16 14 C -0.13 -1.41 1.85 -90.50 -0.17 -1.58 16 15 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 16 C 0.45 5.05 2.62 37.16 0.10 5.14 16 17 F -0.19 -1.95 14.16 2.25 0.03 -1.92 16 18 F -0.18 -2.10 16.62 2.25 0.04 -2.06 16 19 F -0.18 -2.21 16.20 2.25 0.04 -2.18 16 20 C -0.08 -1.03 1.97 -90.54 -0.18 -1.21 16 21 H 0.10 1.42 7.59 -51.93 -0.39 1.03 16 22 C 0.06 0.66 5.85 37.16 0.22 0.88 16 23 O -0.57 -6.18 13.03 -35.23 -0.46 -6.64 16 24 C 0.07 1.04 4.59 -3.83 -0.02 1.02 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.32 7.99 -51.93 -0.41 0.90 16 29 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.73 6.21 -51.93 -0.32 1.41 16 32 H 0.09 1.18 7.92 -51.93 -0.41 0.77 16 33 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.61 5.46 -51.93 -0.28 0.33 16 36 H 0.38 2.29 9.12 45.56 0.42 2.71 16 37 H 0.09 1.38 7.60 -51.93 -0.39 0.99 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -30.77 311.39 -6.43 -37.20 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.62 Total: -1.09 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.77 Total: -7.96 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.36 Total: -36.59 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.46 Total: -6.64 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.11 Total: -6.16 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.77 -6.43 -37.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352686985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.547 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds