Wall clock time and date at job start Tue Mar 31 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48491 * 109.47389 * 270.00299 * 3 2 1 5 5 H 1.48508 * 109.47130 * 30.00624 * 3 2 1 6 6 H 1.48500 * 109.46945 * 150.00160 * 3 2 1 7 7 C 1.37873 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47068 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46966 * 179.97438 * 10 9 7 12 12 C 1.46849 * 111.00111 * 66.04197 * 11 10 9 13 13 C 1.53042 * 109.52591 * 185.83732 * 12 11 10 14 14 C 1.53117 * 109.30984 * 300.80759 * 13 12 11 15 15 H 1.09007 * 109.52212 * 297.76130 * 14 13 12 16 16 C 1.53001 * 109.52218 * 177.57729 * 14 13 12 17 17 F 1.39895 * 109.47309 * 53.57773 * 16 14 13 18 18 F 1.39907 * 109.47140 * 173.57572 * 16 14 13 19 19 F 1.39895 * 109.47109 * 293.57761 * 16 14 13 20 20 C 1.53204 * 109.12165 * 57.62973 * 14 13 12 21 21 H 1.09004 * 109.48928 * 62.31908 * 20 14 13 22 22 C 1.53004 * 109.49272 * 182.42179 * 20 14 13 23 23 O 1.42902 * 109.46894 * 180.53050 * 22 20 14 24 24 C 1.46847 * 111.00083 * 190.25116 * 11 10 9 25 25 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47341 * 59.99956 * 9 7 2 27 27 H 1.09006 * 109.47002 * 299.99967 * 9 7 2 28 28 H 1.08991 * 109.47303 * 59.99724 * 10 9 7 29 29 H 1.09006 * 109.46803 * 299.99625 * 10 9 7 30 30 H 1.09001 * 109.45968 * 65.82333 * 12 11 10 31 31 H 1.08996 * 109.46400 * 305.85410 * 12 11 10 32 32 H 1.09000 * 109.50081 * 60.76057 * 13 12 11 33 33 H 1.08994 * 109.50526 * 180.84197 * 13 12 11 34 34 H 1.09001 * 109.47231 * 300.53527 * 22 20 14 35 35 H 1.09001 * 109.46847 * 60.53410 * 22 20 14 36 36 H 0.96698 * 113.99376 * 180.02562 * 23 22 20 37 37 H 1.09000 * 109.46171 * 294.17725 * 24 11 10 38 38 H 1.09004 * 109.46016 * 54.15470 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 0.7653 -5.1120 -1.2524 13 6 -0.0993 -6.3713 -1.1586 14 6 0.7991 -7.5843 -0.9019 15 1 1.4839 -7.7144 -1.7401 16 6 -0.0653 -8.8372 -0.7472 17 9 -0.9088 -8.9617 -1.8563 18 9 0.7587 -9.9644 -0.6592 19 9 -0.8362 -8.7312 0.4154 20 6 1.6010 -7.3520 0.3827 21 1 0.9173 -7.2609 1.2267 22 6 2.5461 -8.5326 0.6151 23 8 3.2849 -8.3212 1.8199 24 6 2.4163 -6.0644 0.2441 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8893 29 1 2.8721 -3.6042 -0.8906 30 1 1.4662 -5.2136 -2.0810 31 1 0.1268 -4.2449 -1.4212 32 1 -0.8097 -6.2647 -0.3389 33 1 -0.6412 -6.5112 -2.0939 34 1 1.9658 -9.4512 0.7011 35 1 3.2363 -8.6161 -0.2244 36 1 3.9058 -9.0321 2.0302 37 1 3.1094 -6.1615 -0.5916 38 1 2.9768 -5.8890 1.1624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352686986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:08 Heat of formation + Delta-G solvation = -214.988053 kcal Electronic energy + Delta-G solvation = -23312.068912 eV Core-core repulsion = 19352.815197 eV Total energy + Delta-G solvation = -3959.253715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.30620 -47.82456 -47.67967 -39.33233 -36.77154 -34.68919 -32.76614 -31.39810 -29.67755 -27.18281 -25.58876 -24.09445 -22.48604 -22.17829 -20.18648 -19.87227 -18.54667 -18.40944 -17.79554 -17.23355 -16.46711 -15.42731 -15.17867 -14.71007 -14.63452 -14.51614 -14.38356 -14.15298 -13.95521 -13.90122 -13.81859 -13.56179 -13.31428 -12.85030 -12.79126 -12.25801 -12.06296 -11.63730 -11.26251 -11.15850 -11.04500 -10.91183 -10.68682 -10.50549 -10.43680 -10.02318 -9.83191 -9.34549 -9.12178 -8.32992 -7.78019 -5.99661 -4.02060 2.60956 3.32157 3.38650 3.41910 3.62346 3.72216 3.85840 4.13400 4.26084 4.49673 4.65531 4.81952 4.87065 5.07079 5.17079 5.28764 5.36422 5.42866 5.49305 5.57021 5.68087 5.71980 6.03263 6.11709 6.19613 6.21645 6.39768 6.49819 6.95097 7.44941 7.48321 7.53823 7.77816 7.88710 8.07478 8.43025 9.05068 9.61714 11.11685 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.003931 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.894753 B = 7121.188939 C = 7790.565716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.065 3.935 11 N -0.540 5.540 12 C 0.057 3.943 13 C -0.113 4.113 14 C -0.126 4.126 15 H 0.111 0.889 16 C 0.453 3.547 17 F -0.183 7.183 18 F -0.185 7.185 19 F -0.178 7.178 20 C -0.082 4.082 21 H 0.100 0.900 22 C 0.064 3.936 23 O -0.566 6.566 24 C 0.071 3.929 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.378 0.622 37 H 0.027 0.973 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -20.382 -2.323 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.264 5.264 12 C -0.071 4.071 13 C -0.151 4.151 14 C -0.146 4.146 15 H 0.129 0.871 16 C 0.399 3.601 17 F -0.164 7.164 18 F -0.167 7.167 19 F -0.159 7.159 20 C -0.101 4.101 21 H 0.119 0.881 22 C -0.014 4.014 23 O -0.371 6.371 24 C -0.058 4.058 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.224 0.776 37 H 0.045 0.955 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.608 -19.714 -1.927 19.873 hybrid contribution 1.217 0.086 -0.757 1.436 sum 2.826 -19.628 -2.684 20.011 Atomic orbital electron populations 1.69971 1.06015 1.26585 1.50651 1.24982 0.94819 0.99153 0.95287 0.86602 0.79875 0.83529 0.78036 1.20737 1.21195 1.19886 1.21187 0.92985 0.91055 1.50891 0.92806 1.19111 0.93972 0.90080 0.97824 1.22324 0.96736 0.87979 0.99128 1.62017 1.27874 1.02607 1.33943 1.22071 0.96921 0.97522 0.90589 1.21706 0.97761 0.92157 1.03486 1.22609 0.97902 0.92070 1.02023 0.87110 1.20724 0.79701 0.85902 0.73763 1.93172 1.73154 1.96484 1.53629 1.93085 1.71885 1.55991 1.95723 1.93189 1.76878 1.96153 1.49687 1.21235 0.97228 0.95380 0.96285 0.88136 1.22637 0.94098 0.97637 0.87025 1.86506 1.58246 1.49634 1.42703 1.21944 0.93330 0.89188 1.01305 0.92993 0.96480 0.95611 0.91866 0.96150 0.95209 0.88487 0.89562 0.90173 0.92010 0.93583 0.77552 0.95510 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.70 4.91 -27.88 -0.14 0.57 16 10 C 0.06 1.35 4.90 -3.82 -0.02 1.33 16 11 N -0.54 -9.51 4.65 -234.67 -1.09 -10.61 16 12 C 0.06 0.89 5.29 -3.83 -0.02 0.87 16 13 C -0.11 -1.43 5.09 -26.65 -0.14 -1.57 16 14 C -0.13 -1.41 1.85 -90.45 -0.17 -1.58 16 15 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 16 C 0.45 5.05 2.61 37.16 0.10 5.15 16 17 F -0.18 -2.10 16.60 2.25 0.04 -2.06 16 18 F -0.19 -1.95 14.19 2.25 0.03 -1.92 16 19 F -0.18 -2.21 16.21 2.25 0.04 -2.18 16 20 C -0.08 -1.03 1.97 -90.50 -0.18 -1.20 16 21 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 22 C 0.06 0.67 5.86 37.16 0.22 0.89 16 23 O -0.57 -6.18 13.03 -35.23 -0.46 -6.64 16 24 C 0.07 1.04 4.59 -3.84 -0.02 1.02 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.45 6.44 -51.93 -0.33 0.12 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 29 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.73 6.22 -51.93 -0.32 1.40 16 32 H 0.09 1.18 7.93 -51.93 -0.41 0.76 16 33 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 34 H 0.06 0.61 5.47 -51.93 -0.28 0.32 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.38 2.29 9.12 45.56 0.42 2.70 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 1.38 7.60 -51.93 -0.39 0.99 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -30.80 311.45 -6.43 -37.23 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.62 Total: -1.14 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.77 Total: -7.95 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.36 Total: -36.58 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.46 Total: -6.64 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.11 Total: -6.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.80 -6.43 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352686986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.758 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds