Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47164 * 2 1 4 4 C 1.34772 * 116.99603 * 180.02562 * 3 2 1 5 5 O 1.21534 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.47238 * 119.99627 * 180.02562 * 4 3 2 7 7 C 1.36500 * 127.20112 * 359.97325 * 6 4 3 8 8 O 1.33624 * 108.38126 * 179.97438 * 7 6 4 9 9 C 1.34214 * 110.92740 * 0.02562 * 8 7 6 10 10 C 1.50703 * 125.43203 * 179.97438 * 9 8 7 11 11 N 1.46888 * 109.47257 * 270.02559 * 10 9 8 12 12 C 1.46897 * 111.00203 * 174.79735 * 11 10 9 13 13 H 1.08999 * 109.47362 * 325.86942 * 12 11 10 14 14 C 1.50703 * 109.47263 * 85.87140 * 12 11 10 15 15 H 1.08001 * 119.99901 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00242 * 180.02562 * 14 12 11 17 17 N 1.31511 * 119.99770 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00068 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47144 * 89.99554 * 18 16 14 20 20 H 1.48499 * 109.47330 * 209.99555 * 18 16 14 21 21 H 1.48502 * 109.46844 * 329.99481 * 18 16 14 22 22 C 1.53006 * 109.47426 * 205.87107 * 12 11 10 23 23 C 1.52994 * 109.47147 * 64.24418 * 22 12 11 24 24 C 1.34163 * 109.14423 * 0.22629 * 9 8 7 25 25 H 1.08996 * 109.47562 * 59.99528 * 1 2 3 26 26 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46983 * 299.99589 * 1 2 3 28 28 H 1.08998 * 109.46678 * 240.00024 * 2 1 3 29 29 H 1.09000 * 109.47097 * 120.00565 * 2 1 3 30 30 H 1.07995 * 125.80785 * 359.97438 * 7 6 4 31 31 H 1.09003 * 109.47154 * 150.01822 * 10 9 8 32 32 H 1.09007 * 109.46506 * 30.02720 * 10 9 8 33 33 H 1.00903 * 111.00457 * 298.75008 * 11 10 9 34 34 H 0.97000 * 119.99880 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.46922 * 184.24927 * 22 12 11 36 36 H 1.09009 * 109.46596 * 304.24644 * 22 12 11 37 37 H 1.09007 * 109.46933 * 174.90404 * 23 22 12 38 38 H 1.09006 * 109.47285 * 294.90098 * 23 22 12 39 39 H 1.08996 * 109.46798 * 54.90566 * 23 22 12 40 40 H 1.08000 * 127.02242 * 179.77281 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0904 0.5816 -0.0015 6 6 3.9129 2.9060 0.0000 7 6 3.2237 4.0842 0.0005 8 8 4.1055 5.0882 0.0015 9 6 5.3637 4.6212 0.0010 10 6 6.6101 5.4683 0.0013 11 7 7.0145 5.7448 -1.3835 12 6 8.1547 6.6701 -1.4242 13 1 8.0757 7.3805 -0.6013 14 6 9.4384 5.8916 -1.2945 15 1 9.4102 4.8169 -1.1916 16 6 10.6491 6.5514 -1.3060 17 7 10.6835 7.8601 -1.4308 18 14 12.2403 5.5864 -1.1445 19 1 12.7218 5.1962 -2.4940 20 1 13.2650 6.4294 -0.4779 21 1 11.9989 4.3663 -0.3330 22 6 8.1497 7.4275 -2.7537 23 6 6.8960 8.3002 -2.8388 24 6 5.3351 3.2798 -0.0052 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1487 4.1874 0.0002 31 1 7.4111 4.9361 0.5144 32 1 6.4104 6.4082 0.5161 33 1 7.2250 4.8898 -1.8764 34 1 11.5352 8.3242 -1.4394 35 1 9.0366 8.0582 -2.8158 36 1 8.1526 6.7142 -3.5781 37 1 6.9367 8.9074 -3.7432 38 1 6.0115 7.6638 -2.8679 39 1 6.8467 8.9513 -1.9661 40 1 6.1834 2.6113 -0.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354649085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -83.846527 kcal Electronic energy + Delta-G solvation = -21408.401306 eV Core-core repulsion = 17996.691054 eV Total energy + Delta-G solvation = -3411.710251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.47729 -40.21390 -36.63670 -36.37633 -33.23489 -32.81598 -31.84670 -31.38067 -29.55901 -26.63498 -24.95072 -24.24885 -22.83779 -22.48039 -20.95655 -20.20176 -19.57202 -17.54688 -17.20864 -16.75208 -16.68036 -16.00116 -15.79692 -14.85209 -14.47454 -14.23353 -13.87543 -13.55691 -13.51433 -13.08652 -12.95556 -12.72532 -12.63240 -12.22312 -12.07121 -11.86531 -11.60187 -11.22981 -11.13245 -10.90886 -10.75526 -10.68108 -10.65943 -10.21588 -9.80148 -9.67736 -9.61501 -9.14813 -8.54182 -8.43853 -7.42151 -6.05988 -4.19385 1.17199 2.12438 2.44730 2.97583 3.08620 3.24806 3.32290 3.34881 4.35378 4.54316 4.63682 4.64766 4.69420 4.94534 4.98586 5.19104 5.29283 5.45772 5.49428 5.61615 5.63380 5.68651 5.94656 5.98455 6.19965 6.27426 6.37286 6.46039 6.48405 6.68347 7.03813 7.14657 7.17213 7.35012 7.51266 7.70808 7.71751 7.98235 8.03320 8.21281 8.52245 8.91442 9.48959 10.94581 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024706 B = 0.003282 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.072449 B = 8528.947890 C = 9328.642368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.359 6.359 4 C 0.541 3.459 5 O -0.508 6.508 6 C -0.234 4.234 7 C 0.047 3.953 8 O -0.161 6.161 9 C 0.025 3.975 10 C 0.137 3.863 11 N -0.685 5.685 12 C 0.216 3.784 13 H 0.035 0.965 14 C -0.551 4.551 15 H 0.055 0.945 16 C 0.069 3.931 17 N -0.883 5.883 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.106 4.106 23 C -0.137 4.137 24 C -0.168 4.168 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.216 0.784 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.333 0.667 34 H 0.262 0.738 35 H 0.092 0.908 36 H 0.031 0.969 37 H 0.025 0.975 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -9.136 3.298 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.277 6.277 4 C 0.386 3.614 5 O -0.397 6.397 6 C -0.236 4.236 7 C -0.024 4.024 8 O -0.055 6.055 9 C -0.024 4.024 10 C 0.007 3.993 11 N -0.315 5.315 12 C 0.109 3.891 13 H 0.053 0.947 14 C -0.590 4.590 15 H 0.073 0.927 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.145 4.145 23 C -0.194 4.194 24 C -0.188 4.188 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.008 -8.458 3.207 20.153 hybrid contribution 1.667 -1.561 0.323 2.306 sum -16.342 -10.019 3.531 19.491 Atomic orbital electron populations 1.21809 0.92554 1.02993 1.03565 1.23016 0.95256 0.80021 1.02746 1.86532 1.23956 1.32481 1.84755 1.20066 0.80154 0.88701 0.72456 1.90844 1.60360 1.42236 1.46231 1.20458 0.94462 0.90482 1.18229 1.24578 0.95477 0.84461 0.97919 1.83827 1.15796 1.36190 1.69661 1.22818 0.83897 0.93051 1.02631 1.20367 0.87222 0.97631 0.94061 1.60919 1.42051 1.18286 1.10290 1.19205 0.84711 0.90385 0.94805 0.94669 1.21849 0.92054 0.93623 1.51446 0.92674 1.24923 0.99056 0.94838 0.94584 1.69872 1.25910 1.06978 1.49360 0.86633 0.83343 0.79972 0.78286 1.20598 1.21168 1.19983 1.21505 0.97392 0.98028 0.97531 1.21697 0.99949 0.99058 0.98714 1.22419 0.94608 0.94354 1.07433 0.91394 0.90210 0.91451 0.91135 0.91185 0.76785 0.91414 0.89809 0.85013 0.92763 0.88993 0.94972 0.95591 0.93467 0.94378 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.36 -4.17 10.07 -40.69 -0.41 -4.58 16 4 C 0.54 7.77 7.95 34.39 0.27 8.04 16 5 O -0.51 -8.66 16.77 -19.29 -0.32 -8.98 16 6 C -0.23 -3.33 6.31 -103.29 -0.65 -3.99 16 7 C 0.05 0.57 11.94 30.11 0.36 0.92 16 8 O -0.16 -2.37 10.52 7.73 0.08 -2.28 16 9 C 0.03 0.40 6.84 -35.74 -0.24 0.16 16 10 C 0.14 2.42 6.03 -4.98 -0.03 2.39 16 11 N -0.69 -13.79 5.72 -109.22 -0.62 -14.41 16 12 C 0.22 5.11 1.98 -68.86 -0.14 4.98 16 13 H 0.04 0.91 7.70 -51.93 -0.40 0.51 16 14 C -0.55 -14.27 8.47 -34.44 -0.29 -14.56 16 15 H 0.06 1.42 7.73 -52.49 -0.41 1.01 16 16 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 17 N -0.88 -24.28 11.30 55.43 0.63 -23.66 16 18 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.11 -2.47 5.45 -26.73 -0.15 -2.62 16 23 C -0.14 -2.76 9.73 37.15 0.36 -2.40 16 24 C -0.17 -2.63 10.90 -37.44 -0.41 -3.04 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 33 H 0.33 6.71 8.45 -39.29 -0.33 6.38 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 36 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -29.39 345.93 -6.91 -36.30 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.05 Total: 4.81 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.40 Total: -8.09 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.00 Total: -38.07 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.65 Total: -15.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.39 -6.91 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354649085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.548 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds