Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47164 * 2 1 4 4 C 1.34772 * 116.99603 * 180.02562 * 3 2 1 5 5 O 1.21534 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.47238 * 119.99627 * 180.02562 * 4 3 2 7 7 C 1.36500 * 127.20112 * 359.97325 * 6 4 3 8 8 O 1.33624 * 108.38126 * 179.97438 * 7 6 4 9 9 C 1.34214 * 110.92740 * 0.02562 * 8 7 6 10 10 C 1.50703 * 125.43203 * 179.97438 * 9 8 7 11 11 N 1.46888 * 109.47257 * 270.02559 * 10 9 8 12 12 C 1.46897 * 111.00203 * 174.79735 * 11 10 9 13 13 H 1.08999 * 109.47362 * 325.86942 * 12 11 10 14 14 C 1.50703 * 109.47263 * 85.87140 * 12 11 10 15 15 H 1.08001 * 119.99901 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00242 * 180.02562 * 14 12 11 17 17 N 1.31511 * 119.99770 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00068 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47144 * 89.99554 * 18 16 14 20 20 H 1.48499 * 109.47330 * 209.99555 * 18 16 14 21 21 H 1.48502 * 109.46844 * 329.99481 * 18 16 14 22 22 C 1.53006 * 109.47426 * 205.87107 * 12 11 10 23 23 C 1.52994 * 109.47147 * 64.24418 * 22 12 11 24 24 C 1.34163 * 109.14423 * 0.22629 * 9 8 7 25 25 H 1.08996 * 109.47562 * 59.99528 * 1 2 3 26 26 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46983 * 299.99589 * 1 2 3 28 28 H 1.08998 * 109.46678 * 240.00024 * 2 1 3 29 29 H 1.09000 * 109.47097 * 120.00565 * 2 1 3 30 30 H 1.07995 * 125.80785 * 359.97438 * 7 6 4 31 31 H 1.09003 * 109.47154 * 150.01822 * 10 9 8 32 32 H 1.09007 * 109.46506 * 30.02720 * 10 9 8 33 33 H 1.00903 * 111.00457 * 298.75008 * 11 10 9 34 34 H 0.97000 * 119.99880 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.46922 * 184.24927 * 22 12 11 36 36 H 1.09009 * 109.46596 * 304.24644 * 22 12 11 37 37 H 1.09007 * 109.46933 * 174.90404 * 23 22 12 38 38 H 1.09006 * 109.47285 * 294.90098 * 23 22 12 39 39 H 1.08996 * 109.46798 * 54.90566 * 23 22 12 40 40 H 1.08000 * 127.02242 * 179.77281 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0904 0.5816 -0.0015 6 6 3.9129 2.9060 0.0000 7 6 3.2237 4.0842 0.0005 8 8 4.1055 5.0882 0.0015 9 6 5.3637 4.6212 0.0010 10 6 6.6101 5.4683 0.0013 11 7 7.0145 5.7448 -1.3835 12 6 8.1547 6.6701 -1.4242 13 1 8.0757 7.3805 -0.6013 14 6 9.4384 5.8916 -1.2945 15 1 9.4102 4.8169 -1.1916 16 6 10.6491 6.5514 -1.3060 17 7 10.6835 7.8601 -1.4308 18 14 12.2403 5.5864 -1.1445 19 1 12.7218 5.1962 -2.4940 20 1 13.2650 6.4294 -0.4779 21 1 11.9989 4.3663 -0.3330 22 6 8.1497 7.4275 -2.7537 23 6 6.8960 8.3002 -2.8388 24 6 5.3351 3.2798 -0.0052 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1487 4.1874 0.0002 31 1 7.4111 4.9361 0.5144 32 1 6.4104 6.4082 0.5161 33 1 7.2250 4.8898 -1.8764 34 1 11.5352 8.3242 -1.4394 35 1 9.0366 8.0582 -2.8158 36 1 8.1526 6.7142 -3.5781 37 1 6.9367 8.9074 -3.7432 38 1 6.0115 7.6638 -2.8679 39 1 6.8467 8.9513 -1.9661 40 1 6.1834 2.6113 -0.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354649085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = -101.009759 kcal Electronic energy + Delta-G solvation = -21409.145559 eV Core-core repulsion = 17996.691054 eV Total energy + Delta-G solvation = -3412.454505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.62589 -41.24549 -38.12233 -37.65883 -34.86594 -34.03397 -33.27853 -32.47381 -30.94757 -28.40037 -26.14882 -25.63633 -24.22577 -23.58124 -22.13503 -21.51363 -21.18023 -18.93017 -18.39549 -18.25067 -17.72316 -17.16815 -16.89630 -16.70608 -15.88994 -15.54161 -15.13260 -15.06160 -14.68154 -14.44780 -14.17821 -13.89218 -13.66408 -13.57840 -13.28422 -13.08511 -12.96454 -12.95319 -12.63724 -12.51162 -12.41459 -12.06157 -11.79490 -11.55568 -11.52669 -11.45583 -11.04491 -10.94336 -10.46564 -9.73886 -9.13933 -8.06826 -6.27911 0.12702 0.89268 1.39228 1.41890 1.49813 1.50437 1.86748 1.98233 2.40628 3.14680 3.49957 3.53578 3.82790 4.01288 4.01541 4.09422 4.28762 4.33963 4.41682 4.61072 4.66609 4.73042 4.78384 4.87261 4.94811 4.94916 4.99339 5.12628 5.16438 5.21659 5.38853 5.43966 5.51082 5.62233 5.76552 5.99392 6.07917 6.16158 6.32060 6.65907 6.71740 6.96284 7.43552 8.90712 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024706 B = 0.003282 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.072449 B = 8528.947890 C = 9328.642368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.545 3.455 5 O -0.545 6.545 6 C -0.261 4.261 7 C 0.086 3.914 8 O -0.167 6.167 9 C 0.012 3.988 10 C 0.142 3.858 11 N -0.678 5.678 12 C 0.223 3.777 13 H 0.010 0.990 14 C -0.562 4.562 15 H 0.052 0.948 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.948 3.052 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.172 4.172 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.333 0.667 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.033 0.967 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.926 -9.746 3.305 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.392 3.608 5 O -0.437 6.437 6 C -0.263 4.263 7 C 0.015 3.985 8 O -0.061 6.061 9 C -0.036 4.036 10 C 0.013 3.987 11 N -0.308 5.308 12 C 0.115 3.885 13 H 0.028 0.972 14 C -0.601 4.601 15 H 0.070 0.930 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.775 3.225 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.142 4.142 23 C -0.182 4.182 24 C -0.192 4.192 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.280 0.720 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.138 -9.070 3.218 22.320 hybrid contribution 2.193 -1.421 0.341 2.636 sum -17.945 -10.492 3.559 21.089 Atomic orbital electron populations 1.21828 0.89796 1.04518 1.03988 1.23356 0.97321 0.78698 1.02619 1.86525 1.22137 1.34138 1.84043 1.20083 0.80844 0.88260 0.71573 1.90825 1.61361 1.43267 1.48219 1.20512 0.93980 0.91458 1.20391 1.25468 0.96719 0.82821 0.93448 1.83829 1.15496 1.36976 1.69839 1.22240 0.84024 0.92579 1.04793 1.20208 0.88187 0.97882 0.92467 1.60832 1.40154 1.17838 1.11956 1.18974 0.85170 0.90362 0.93989 0.97241 1.22162 0.93266 0.93699 1.50995 0.92964 1.25612 1.01907 0.95649 0.94563 1.69990 1.26475 1.08114 1.50143 0.85712 0.79929 0.78733 0.78162 1.20359 1.20937 1.19702 1.21377 0.97811 0.97930 0.97070 1.21552 0.98457 0.98707 0.99448 1.22479 0.95647 0.94265 1.06811 0.91016 0.88148 0.90916 0.91457 0.91309 0.71968 0.92197 0.89879 0.85027 0.92806 0.91822 0.95420 0.93776 0.92607 0.94743 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.05 0.87 6.20 71.98 0.45 1.31 16 3 O -0.35 -7.42 10.07 -56.83 -0.57 -8.00 16 4 C 0.55 15.07 7.95 70.19 0.56 15.63 16 5 O -0.54 -18.58 16.77 19.72 0.33 -18.25 16 6 C -0.26 -7.04 6.31 -19.00 -0.12 -7.16 16 7 C 0.09 1.80 11.94 67.41 0.80 2.61 16 8 O -0.17 -4.56 10.52 4.73 0.05 -4.51 16 9 C 0.01 0.39 6.84 24.76 0.17 0.56 16 10 C 0.14 5.05 6.03 85.56 0.52 5.57 16 11 N -0.68 -27.39 5.72 -499.47 -2.86 -30.24 16 12 C 0.22 10.73 1.98 44.17 0.09 10.82 16 13 H 0.01 0.51 7.70 -2.39 -0.02 0.49 16 14 C -0.56 -29.54 8.47 25.60 0.22 -29.32 16 15 H 0.05 2.71 7.73 -2.91 -0.02 2.69 16 16 C 0.02 1.24 5.29 84.66 0.45 1.69 16 17 N -0.91 -50.75 11.30 21.45 0.24 -50.50 16 18 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 C -0.10 -4.85 5.45 30.59 0.17 -4.69 16 23 C -0.12 -4.91 9.73 71.98 0.70 -4.21 16 24 C -0.17 -5.33 10.90 23.65 0.26 -5.07 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.26 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.06 2.21 8.11 -2.39 -0.02 2.19 16 32 H 0.08 2.94 7.93 -2.38 -0.02 2.92 16 33 H 0.33 13.50 8.45 -89.69 -0.76 12.74 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.06 3.37 5.97 -2.38 -0.01 3.36 16 36 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.05 2.09 7.88 -2.38 -0.02 2.07 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.15 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -63.74 345.93 4.49 -59.25 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.28 Total: 20.25 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 4.99 Total: -12.81 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.62 Total: -80.75 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.19 Total: -30.76 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -63.74 4.49 -59.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354649085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.764 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds