Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46978 * 2 1 4 4 H 1.08998 * 109.46961 * 54.46836 * 3 2 1 5 5 C 1.50697 * 109.47199 * 174.47220 * 3 2 1 6 6 H 1.08005 * 120.00004 * 119.99647 * 5 3 2 7 7 C 1.37874 * 120.00162 * 300.00182 * 5 3 2 8 8 N 1.31521 * 119.99952 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00286 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46983 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47126 * 119.99691 * 9 7 5 12 12 H 1.48499 * 109.47262 * 239.99625 * 9 7 5 13 13 N 1.46904 * 109.46959 * 294.47235 * 3 2 1 14 14 C 1.46895 * 111.00013 * 140.61997 * 13 3 2 15 15 C 1.50709 * 109.46863 * 85.26861 * 14 13 3 16 16 C 1.32598 * 119.99651 * 124.47460 * 15 14 13 17 17 C 1.47767 * 120.00084 * 6.97429 * 16 15 14 18 18 C 1.39551 * 120.12940 * 40.93070 * 17 16 15 19 19 C 1.37900 * 119.90703 * 179.97438 * 18 17 16 20 20 C 1.38625 * 120.16967 * 0.02562 * 19 18 17 21 21 F 1.35093 * 119.86972 * 179.97438 * 20 19 18 22 22 C 1.38506 * 120.26009 * 0.02562 * 20 19 18 23 23 C 1.38190 * 120.08919 * 359.69635 * 22 20 19 24 24 F 1.35101 * 120.08387 * 180.27587 * 23 22 20 25 25 H 1.09001 * 109.47269 * 187.09301 * 1 2 3 26 26 H 1.09006 * 109.47095 * 67.10139 * 1 2 3 27 27 H 1.09001 * 109.47569 * 307.09855 * 1 2 3 28 28 H 1.08995 * 109.47357 * 119.99234 * 2 1 3 29 29 H 1.08998 * 109.47720 * 240.00242 * 2 1 3 30 30 H 0.96998 * 120.00102 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99950 * 264.57829 * 13 3 2 32 32 H 1.08996 * 109.47252 * 205.26722 * 14 13 3 33 33 H 1.09003 * 109.47113 * 325.27400 * 14 13 3 34 34 H 1.07994 * 119.99952 * 304.47353 * 15 14 13 35 35 H 1.08004 * 119.99748 * 186.97790 * 16 15 14 36 36 H 1.07995 * 120.04405 * 359.95415 * 18 17 16 37 37 H 1.08000 * 119.91580 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.95127 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9842 0.8363 5 6 3.5407 1.4448 0.1369 6 1 4.1527 1.8870 -0.6354 7 6 4.1325 0.8823 1.2479 8 7 3.3872 0.3442 2.1885 9 14 5.9927 0.8858 1.4179 10 1 6.5968 1.5472 0.2334 11 1 6.3760 1.6250 2.6474 12 1 6.4842 -0.5127 1.5077 13 7 1.6622 2.0955 -1.2606 14 6 1.2513 3.4868 -1.0303 15 6 2.4691 4.3747 -1.0177 16 6 2.5414 5.4124 -1.8399 17 6 1.3700 5.7905 -2.6574 18 6 0.0893 5.7568 -2.1040 19 6 -1.0006 6.1111 -2.8709 20 6 -0.8274 6.5000 -4.1901 21 9 -1.8995 6.8453 -4.9361 22 6 0.4404 6.5350 -4.7468 23 6 1.5408 6.1877 -3.9863 24 9 2.7779 6.2271 -4.5278 25 1 -0.3634 -1.0198 0.1269 26 1 -0.3633 0.3999 -0.9467 27 1 -0.3634 0.6199 0.8196 28 1 1.8933 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8036 -0.0518 2.9699 31 1 2.4135 2.0467 -1.9324 32 1 0.5789 3.8038 -1.8275 33 1 0.7382 3.5602 -0.0714 34 1 3.2826 4.1657 -0.3390 35 1 3.4567 5.9813 -1.9122 36 1 -0.0479 5.4534 -1.0767 37 1 -1.9917 6.0854 -2.4426 38 1 0.5697 6.8392 -5.7750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358278347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -54.189337 kcal Electronic energy + Delta-G solvation = -21472.753802 eV Core-core repulsion = 17951.242067 eV Total energy + Delta-G solvation = -3521.511735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.129 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.10686 -48.98847 -39.21956 -36.70341 -34.42714 -32.15931 -30.97247 -30.94627 -28.89032 -26.82320 -24.66058 -23.05610 -22.77980 -22.16823 -19.58863 -19.19588 -18.17756 -17.25674 -16.74269 -16.09069 -15.88080 -15.59392 -15.34357 -14.91615 -14.71679 -14.54509 -13.92913 -13.65261 -13.37021 -13.05143 -12.75272 -12.53650 -12.27363 -12.05271 -11.60955 -11.56538 -11.25984 -11.10532 -10.93959 -10.77048 -10.75426 -10.23500 -9.68973 -9.59103 -9.48306 -9.09698 -9.01551 -8.43990 -8.15681 -7.33846 -6.06241 -4.18198 0.70286 0.91793 2.42925 3.22056 3.31463 3.34117 3.37512 3.77088 4.31314 4.34573 4.50481 4.67099 4.76673 5.03616 5.19079 5.34801 5.58733 5.65154 5.70229 5.73921 5.86260 5.92329 6.01840 6.16543 6.35730 6.43947 6.47499 6.63884 6.67535 6.87100 6.97692 7.09343 7.13832 7.42490 7.52777 7.72461 8.02581 8.07385 8.27919 8.59024 8.94873 9.49411 10.94865 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.004212 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.679346 B = 6645.693620 C = 7567.155441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.211 3.789 4 H 0.029 0.971 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.680 5.680 14 C 0.073 3.927 15 C -0.122 4.122 16 C -0.165 4.165 17 C -0.074 4.074 18 C -0.054 4.054 19 C -0.162 4.162 20 C 0.118 3.882 21 F -0.136 7.136 22 C -0.193 4.193 23 C 0.130 3.870 24 F -0.129 7.129 25 H 0.025 0.975 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.333 0.667 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 11.402 -8.760 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.047 0.953 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.308 5.308 14 C -0.057 4.057 15 C -0.142 4.142 16 C -0.184 4.184 17 C -0.075 4.075 18 C -0.072 4.072 19 C -0.180 4.180 20 C 0.098 3.902 21 F -0.114 7.114 22 C -0.213 4.213 23 C 0.110 3.890 24 F -0.107 7.107 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.503 11.037 -8.615 15.885 hybrid contribution 2.139 0.441 0.082 2.186 sum -5.364 11.478 -8.533 15.275 Atomic orbital electron populations 1.21696 0.99131 0.98397 1.00145 1.21512 0.91990 0.99349 1.01654 1.19314 0.93376 0.91463 0.85533 0.95272 1.21856 0.92396 1.38497 1.05322 0.92607 1.24928 0.97854 0.94931 0.95780 1.69888 1.34700 1.38253 1.09323 0.86622 0.86060 0.77854 0.77967 1.19865 1.21057 1.20930 1.61190 1.43936 1.11307 1.14322 1.21711 0.94134 0.88747 1.01065 1.24630 1.01536 0.93027 0.94979 1.21323 0.96246 1.00854 0.99999 1.19211 0.95286 1.00959 0.92072 1.21213 0.89925 0.95308 1.00718 1.21138 1.00964 1.03302 0.92635 1.17323 0.82745 1.00405 0.89677 1.91509 1.53916 1.89680 1.76340 1.20895 0.90778 1.07578 1.02007 1.17393 0.79581 1.00708 0.91281 1.91515 1.39526 1.93836 1.85815 0.95604 0.93639 0.94523 0.89229 0.94984 0.92900 0.84982 0.91007 0.90809 0.85123 0.86364 0.83355 0.83981 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.73 37.16 0.36 -2.38 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.63 16 3 C 0.21 4.93 2.00 -68.86 -0.14 4.79 16 4 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 5 C -0.54 -13.80 7.83 -34.44 -0.27 -14.07 16 6 H 0.06 1.42 7.52 -52.48 -0.39 1.02 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.50 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.53 6.08 -109.21 -0.66 -14.19 16 14 C 0.07 1.22 4.88 -4.97 -0.02 1.19 16 15 C -0.12 -1.97 9.18 -36.21 -0.33 -2.30 16 16 C -0.16 -2.36 9.43 -37.59 -0.35 -2.72 16 17 C -0.07 -0.98 5.11 -104.95 -0.54 -1.51 16 18 C -0.05 -0.62 7.29 -39.22 -0.29 -0.91 16 19 C -0.16 -1.70 10.01 -39.56 -0.40 -2.10 16 20 C 0.12 1.33 7.30 -39.34 -0.29 1.04 16 21 F -0.14 -1.55 17.26 2.25 0.04 -1.51 16 22 C -0.19 -2.20 9.99 -39.50 -0.39 -2.59 16 23 C 0.13 1.68 7.28 -39.03 -0.28 1.40 16 24 F -0.13 -1.77 16.82 2.25 0.04 -1.73 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.87 7.97 -51.93 -0.41 0.46 16 27 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.09 2.34 5.94 -51.93 -0.31 2.03 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.33 6.77 7.81 -39.29 -0.31 6.46 16 32 H 0.07 1.09 4.70 -51.93 -0.24 0.85 16 33 H 0.07 1.26 7.33 -51.93 -0.38 0.88 16 34 H 0.13 2.38 7.54 -52.49 -0.40 1.98 16 35 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.15 1.58 6.63 -52.49 -0.35 1.24 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -26.44 322.62 -8.14 -34.58 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.84 Total: 7.13 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.18 Total: -21.10 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.04 Total: -37.68 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.44 -8.14 -34.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.612 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds