Wall clock time and date at job start Tue Mar 31 2020 05:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47422 * 239.99979 * 3 2 1 5 5 H 1.48493 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46932 * 120.00153 * 3 2 1 7 7 C 1.38802 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00626 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99572 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99783 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47526 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47258 * 180.02562 * 12 11 10 14 14 C 1.48567 * 111.00034 * 285.41699 * 13 12 11 15 15 C 1.54374 * 104.59834 * 200.95936 * 14 13 12 16 16 C 1.54266 * 105.05582 * 23.85477 * 15 14 13 17 17 C 1.48566 * 111.00074 * 170.00306 * 13 12 11 18 18 H 1.08998 * 110.41149 * 40.25833 * 17 13 12 19 19 C 1.50706 * 110.40862 * 277.81687 * 17 13 12 20 20 N 1.30499 * 125.64728 * 335.02199 * 19 17 13 21 21 C 1.34127 * 109.25298 * 180.02562 * 20 19 17 22 22 C 1.34667 * 108.02137 * 0.02562 * 21 20 19 23 23 N 1.35034 * 125.64761 * 154.71969 * 19 17 13 24 24 H 0.97000 * 126.40598 * 0.02562 * 23 19 17 25 25 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47465 * 59.99873 * 10 9 7 27 27 H 1.09009 * 109.47255 * 299.99763 * 10 9 7 28 28 H 1.09011 * 109.46978 * 59.99672 * 11 10 9 29 29 H 1.08997 * 109.47261 * 300.00167 * 11 10 9 30 30 H 1.08997 * 109.47228 * 59.99779 * 12 11 10 31 31 H 1.09001 * 109.47556 * 299.99808 * 12 11 10 32 32 H 1.09004 * 110.40948 * 319.74003 * 14 13 12 33 33 H 1.08997 * 110.40880 * 82.18055 * 14 13 12 34 34 H 1.08996 * 110.32350 * 264.95870 * 15 14 13 35 35 H 1.08996 * 110.41048 * 142.79150 * 15 14 13 36 36 H 1.09004 * 110.32346 * 241.09906 * 16 15 14 37 37 H 1.09003 * 110.40795 * 118.94286 * 16 15 14 38 38 H 1.08003 * 125.98925 * 180.02562 * 21 20 19 39 39 H 1.08002 * 126.59175 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9794 -5.3243 -0.0012 12 6 3.1514 -6.3077 -0.0018 13 7 2.6362 -7.6834 -0.0031 14 6 2.1040 -8.0539 1.3336 15 6 2.1149 -9.5975 1.3426 16 6 3.1837 -9.9968 0.3044 17 6 3.7287 -8.6608 -0.2445 18 1 4.6284 -8.3665 0.2959 19 6 4.0143 -8.7760 -1.7198 20 7 3.1702 -8.5160 -2.6804 21 6 3.7666 -8.7285 -3.8628 22 6 5.0280 -9.1362 -3.6259 23 7 5.1878 -9.1599 -2.2666 24 1 5.9925 -9.4097 -1.7860 25 1 -0.4850 0.8401 0.0004 26 1 3.1245 -3.7314 0.8894 27 1 3.1245 -3.7313 -0.8906 28 1 1.3709 -5.4840 -0.8915 29 1 1.3705 -5.4847 0.8885 30 1 3.7601 -6.1481 0.8881 31 1 3.7599 -6.1473 -0.8918 32 1 2.7495 -7.6645 2.1210 33 1 1.0873 -7.6802 1.4548 34 1 1.1391 -9.9847 1.0494 35 1 2.3882 -9.9700 2.3298 36 1 2.7326 -10.5800 -0.4984 37 1 3.9830 -10.5646 0.7808 38 1 3.3145 -8.5958 -4.8346 39 1 5.7722 -9.3905 -4.3661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378437000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:30 Heat of formation + Delta-G solvation = 52.638455 kcal Electronic energy + Delta-G solvation = -19273.479721 eV Core-core repulsion = 16342.733524 eV Total energy + Delta-G solvation = -2930.746196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12007 -39.01336 -34.26264 -32.53260 -32.37050 -31.06317 -30.52112 -27.63446 -25.75800 -24.96884 -22.43676 -21.79316 -21.43930 -20.35012 -20.04080 -18.14474 -17.36021 -16.13709 -15.56298 -15.07248 -14.81725 -14.75307 -14.50388 -14.07139 -13.75875 -13.63982 -13.27069 -12.97204 -12.68488 -12.54540 -11.92098 -11.59580 -11.49756 -11.33970 -11.14167 -10.99926 -10.76009 -10.69984 -10.58117 -10.17595 -10.04567 -9.90097 -9.47326 -8.99361 -8.48780 -8.45019 -8.21597 -6.44562 -6.16484 -3.85903 1.93099 2.87421 3.14693 3.25692 3.26924 3.31419 3.61715 4.00446 4.21383 4.28966 4.46726 4.71733 4.75840 4.94372 5.04199 5.18993 5.28374 5.31705 5.34627 5.44301 5.48125 5.53351 5.62500 5.63315 5.80551 5.85423 5.94245 5.97231 5.99991 6.05017 6.19346 6.43163 6.67234 6.69621 6.82207 6.89575 7.11094 7.24006 7.65828 8.14785 8.42323 9.29332 10.91666 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.003391 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.713303 B = 8254.269463 C = 9025.292995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.070 0.930 9 S -0.130 6.130 10 C -0.112 4.112 11 C -0.087 4.087 12 C 0.054 3.946 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.121 4.121 16 C -0.113 4.113 17 C 0.145 3.855 18 H 0.063 0.937 19 C 0.218 3.782 20 N -0.450 5.450 21 C -0.030 4.030 22 C -0.063 4.063 23 N -0.572 5.572 24 H 0.415 0.585 25 H 0.267 0.733 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.169 0.831 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.153 -22.417 -0.562 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.099 5.901 10 C -0.261 4.261 11 C -0.126 4.126 12 C -0.075 4.075 13 N -0.204 5.204 14 C -0.097 4.097 15 C -0.160 4.160 16 C -0.152 4.152 17 C 0.034 3.966 18 H 0.080 0.920 19 C -0.046 4.046 20 N -0.169 5.169 21 C -0.178 4.178 22 C -0.197 4.197 23 N -0.175 5.175 24 H 0.252 0.748 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.186 0.814 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.593 -22.202 -0.923 23.825 hybrid contribution 3.931 1.066 0.492 4.102 sum 12.524 -21.136 -0.432 24.572 Atomic orbital electron populations 1.70020 1.05892 1.27342 1.47289 1.25002 0.95060 0.98995 0.94693 0.86242 0.79247 0.81346 0.78785 1.19970 1.20819 1.20010 1.22665 0.94472 0.90973 1.58411 0.91134 1.84638 1.09526 0.99164 1.96810 1.23231 1.02788 0.97621 1.02451 1.21162 0.96746 0.91400 1.03307 1.22332 0.97420 0.87510 1.00263 1.65145 1.26717 1.01518 1.27060 1.23188 1.01744 0.95036 0.89689 1.22281 0.99702 0.95517 0.98453 1.22320 0.98565 0.95333 0.98997 1.20776 0.94899 0.94715 0.86161 0.91951 1.22890 0.82241 1.03278 0.96235 1.70382 1.30610 1.18352 0.97524 1.22507 0.92299 1.05460 0.97571 1.22714 1.01054 1.11643 0.84245 1.43265 1.13764 1.53231 1.07284 0.74838 0.92300 0.92562 0.92335 0.90464 0.91787 0.94921 0.91206 0.93626 0.89104 0.90570 0.91246 0.90458 0.91283 0.81410 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 10 C -0.11 -2.40 5.67 37.16 0.21 -2.18 16 11 C -0.09 -1.57 5.33 -26.74 -0.14 -1.71 16 12 C 0.05 0.81 4.77 -3.83 -0.02 0.79 16 13 N -0.48 -6.44 4.86 -223.50 -1.09 -7.53 16 14 C 0.03 0.35 5.91 -2.18 -0.01 0.34 16 15 C -0.12 -1.07 7.00 -25.35 -0.18 -1.25 16 16 C -0.11 -1.00 6.54 -25.35 -0.17 -1.17 16 17 C 0.15 1.59 2.81 -67.22 -0.19 1.40 16 18 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 19 C 0.22 2.66 6.65 -155.42 -1.03 1.62 16 20 N -0.45 -6.75 11.05 -10.82 -0.12 -6.87 16 21 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 22 C -0.06 -0.58 12.04 -16.56 -0.20 -0.78 16 23 N -0.57 -5.14 6.15 -10.23 -0.06 -5.21 16 24 H 0.41 2.28 8.96 -40.82 -0.37 1.91 16 25 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 27 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 28 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 29 H 0.06 1.13 7.47 -51.93 -0.39 0.74 16 30 H 0.03 0.45 7.77 -51.93 -0.40 0.05 16 31 H 0.07 1.12 7.78 -51.93 -0.40 0.71 16 32 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 33 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -34.96 335.70 -10.67 -45.63 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.12 Total: 0.18 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.74 Total: -16.53 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.54 Total: -45.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.96 -10.67 -45.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378437000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.269 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds