Wall clock time and date at job start Tue Mar 31 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47422 * 239.99979 * 3 2 1 5 5 H 1.48493 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46932 * 120.00153 * 3 2 1 7 7 C 1.38802 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00626 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99572 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99783 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47526 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47258 * 180.02562 * 12 11 10 14 14 C 1.48567 * 111.00034 * 285.41699 * 13 12 11 15 15 C 1.54374 * 104.59834 * 200.95936 * 14 13 12 16 16 C 1.54266 * 105.05582 * 23.85477 * 15 14 13 17 17 C 1.48566 * 111.00074 * 170.00306 * 13 12 11 18 18 H 1.08998 * 110.41149 * 40.25833 * 17 13 12 19 19 C 1.50706 * 110.40862 * 277.81687 * 17 13 12 20 20 N 1.30499 * 125.64728 * 335.02199 * 19 17 13 21 21 C 1.34127 * 109.25298 * 180.02562 * 20 19 17 22 22 C 1.34667 * 108.02137 * 0.02562 * 21 20 19 23 23 N 1.35034 * 125.64761 * 154.71969 * 19 17 13 24 24 H 0.97000 * 126.40598 * 0.02562 * 23 19 17 25 25 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47465 * 59.99873 * 10 9 7 27 27 H 1.09009 * 109.47255 * 299.99763 * 10 9 7 28 28 H 1.09011 * 109.46978 * 59.99672 * 11 10 9 29 29 H 1.08997 * 109.47261 * 300.00167 * 11 10 9 30 30 H 1.08997 * 109.47228 * 59.99779 * 12 11 10 31 31 H 1.09001 * 109.47556 * 299.99808 * 12 11 10 32 32 H 1.09004 * 110.40948 * 319.74003 * 14 13 12 33 33 H 1.08997 * 110.40880 * 82.18055 * 14 13 12 34 34 H 1.08996 * 110.32350 * 264.95870 * 15 14 13 35 35 H 1.08996 * 110.41048 * 142.79150 * 15 14 13 36 36 H 1.09004 * 110.32346 * 241.09906 * 16 15 14 37 37 H 1.09003 * 110.40795 * 118.94286 * 16 15 14 38 38 H 1.08003 * 125.98925 * 180.02562 * 21 20 19 39 39 H 1.08002 * 126.59175 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9794 -5.3243 -0.0012 12 6 3.1514 -6.3077 -0.0018 13 7 2.6362 -7.6834 -0.0031 14 6 2.1040 -8.0539 1.3336 15 6 2.1149 -9.5975 1.3426 16 6 3.1837 -9.9968 0.3044 17 6 3.7287 -8.6608 -0.2445 18 1 4.6284 -8.3665 0.2959 19 6 4.0143 -8.7760 -1.7198 20 7 3.1702 -8.5160 -2.6804 21 6 3.7666 -8.7285 -3.8628 22 6 5.0280 -9.1362 -3.6259 23 7 5.1878 -9.1599 -2.2666 24 1 5.9925 -9.4097 -1.7860 25 1 -0.4850 0.8401 0.0004 26 1 3.1245 -3.7314 0.8894 27 1 3.1245 -3.7313 -0.8906 28 1 1.3709 -5.4840 -0.8915 29 1 1.3705 -5.4847 0.8885 30 1 3.7601 -6.1481 0.8881 31 1 3.7599 -6.1473 -0.8918 32 1 2.7495 -7.6645 2.1210 33 1 1.0873 -7.6802 1.4548 34 1 1.1391 -9.9847 1.0494 35 1 2.3882 -9.9700 2.3298 36 1 2.7326 -10.5800 -0.4984 37 1 3.9830 -10.5646 0.7808 38 1 3.3145 -8.5958 -4.8346 39 1 5.7722 -9.3905 -4.3661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378437000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:29 Heat of formation + Delta-G solvation = 28.796440 kcal Electronic energy + Delta-G solvation = -19274.513588 eV Core-core repulsion = 16342.733524 eV Total energy + Delta-G solvation = -2931.780064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.126 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.92669 -39.92136 -35.55855 -34.60375 -33.37146 -31.91050 -31.64717 -28.43176 -27.87128 -26.41302 -23.45164 -22.73973 -22.39786 -21.37522 -20.90325 -19.56794 -18.88863 -17.12494 -16.90029 -16.55629 -16.20237 -15.96179 -15.72943 -15.40379 -14.88499 -14.53669 -14.42019 -14.27147 -13.91626 -13.68255 -13.21899 -12.99296 -12.98924 -12.84190 -12.57251 -12.34285 -12.32845 -12.09485 -11.64419 -11.41490 -11.36396 -11.13681 -10.90836 -10.78330 -10.33312 -9.41912 -9.27665 -8.67665 -8.37124 -6.14311 1.16273 1.30329 1.40634 1.47360 1.72587 2.16024 2.28004 2.28340 2.96630 3.03774 3.33119 3.44026 3.67286 3.89917 3.94172 4.07407 4.23428 4.29967 4.34645 4.41258 4.42208 4.56530 4.60405 4.69709 4.73736 4.74411 4.82079 4.94638 5.04922 5.14832 5.17333 5.21079 5.31334 5.32032 5.38324 5.86451 5.91727 6.06246 6.17446 6.59417 7.04154 7.32916 8.72316 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.003391 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.713303 B = 8254.269463 C = 9025.292995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.072 0.928 9 S -0.197 6.197 10 C -0.085 4.085 11 C -0.074 4.074 12 C 0.070 3.930 13 N -0.505 5.505 14 C 0.027 3.973 15 C -0.115 4.115 16 C -0.105 4.105 17 C 0.144 3.856 18 H 0.083 0.917 19 C 0.204 3.796 20 N -0.505 5.505 21 C -0.073 4.073 22 C -0.037 4.037 23 N -0.558 5.558 24 H 0.433 0.567 25 H 0.272 0.728 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.172 0.828 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.919 -23.309 0.171 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.689 4.689 8 H 0.090 0.910 9 S 0.032 5.968 10 C -0.234 4.234 11 C -0.113 4.113 12 C -0.060 4.060 13 N -0.229 5.229 14 C -0.100 4.100 15 C -0.153 4.153 16 C -0.144 4.144 17 C 0.034 3.966 18 H 0.101 0.899 19 C -0.062 4.062 20 N -0.225 5.225 21 C -0.220 4.220 22 C -0.172 4.172 23 N -0.163 5.163 24 H 0.274 0.726 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.190 0.810 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 11.376 -23.124 -0.179 25.771 hybrid contribution 3.070 1.242 0.218 3.319 sum 14.446 -21.882 0.039 26.220 Atomic orbital electron populations 1.70159 1.07751 1.28660 1.47834 1.26097 0.96048 1.03156 0.93648 0.85048 0.77939 0.75928 0.79378 1.19009 1.19808 1.18722 1.23017 0.94722 0.92009 1.59148 0.90964 1.84687 1.14004 1.01125 1.97020 1.23129 1.00122 0.97601 1.02563 1.21011 0.97825 0.90212 1.02252 1.22026 0.95544 0.88028 1.00355 1.65025 1.28300 1.00990 1.28618 1.23243 1.00992 0.96869 0.88933 1.22268 0.99585 0.93573 0.99891 1.22305 0.99304 0.94315 0.98488 1.20937 0.94921 0.94866 0.85888 0.89882 1.23045 0.82957 1.03728 0.96422 1.70270 1.32887 1.20175 0.99119 1.22817 0.94030 1.07820 0.97378 1.23246 1.00511 1.08596 0.84831 1.43216 1.13676 1.52146 1.07286 0.72632 0.91906 0.91631 0.92711 0.92741 0.91597 0.93286 0.92468 0.92505 0.90646 0.91279 0.88615 0.92069 0.88077 0.81025 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 2 C 0.02 0.90 5.49 84.86 0.47 1.37 16 3 Si 1.00 44.90 29.55 68.60 2.03 46.93 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.54 -32.45 9.50 67.95 0.65 -31.80 16 8 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 9 S -0.20 -11.08 21.44 -56.49 -1.21 -12.29 16 10 C -0.08 -3.68 5.67 71.98 0.41 -3.27 16 11 C -0.07 -2.71 5.33 30.59 0.16 -2.55 16 12 C 0.07 2.06 4.77 86.30 0.41 2.47 16 13 N -0.51 -13.21 4.86 -861.03 -4.19 -17.40 16 14 C 0.03 0.57 5.91 86.45 0.51 1.08 16 15 C -0.12 -1.80 7.00 31.49 0.22 -1.58 16 16 C -0.11 -1.62 6.54 31.49 0.21 -1.41 16 17 C 0.14 2.89 2.81 44.31 0.12 3.01 16 18 H 0.08 1.31 8.00 -2.39 -0.02 1.29 16 19 C 0.20 4.73 6.65 138.13 0.92 5.65 16 20 N -0.51 -15.34 11.05 -188.13 -2.08 -17.41 16 21 C -0.07 -1.77 11.87 83.52 0.99 -0.78 16 22 C -0.04 -0.61 12.04 83.08 1.00 0.39 16 23 N -0.56 -8.73 6.15 -186.27 -1.15 -9.87 16 24 H 0.43 3.33 8.96 -92.71 -0.83 2.50 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.06 2.72 8.14 -2.40 -0.02 2.70 16 27 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.07 2.37 7.47 -2.39 -0.02 2.35 16 30 H 0.05 1.27 7.77 -2.39 -0.02 1.25 16 31 H 0.06 1.81 7.78 -2.39 -0.02 1.79 16 32 H 0.06 1.07 7.75 -2.38 -0.02 1.05 16 33 H 0.08 1.79 7.85 -2.39 -0.02 1.78 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.15 7.85 -2.38 -0.02 1.14 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.21 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -78.26 335.70 -0.04 -78.30 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.20 Total: 15.23 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 6.07 Total: -27.41 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -7.13 Total: -100.76 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -1.21 Total: -12.29 kcal Total: -78.26 -0.04 -78.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378437000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.098 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds