Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46801 * 2 1 4 4 C 1.53001 * 109.47132 * 240.00453 * 2 1 3 5 5 N 1.46900 * 109.47121 * 51.63213 * 4 2 1 6 6 C 1.46840 * 110.99969 * 52.27686 * 5 4 2 7 7 C 1.53042 * 109.52200 * 185.83959 * 6 5 4 8 8 C 1.53118 * 109.27626 * 300.81613 * 7 6 5 9 9 C 1.50700 * 109.52435 * 177.56131 * 8 7 6 10 10 H 1.07998 * 120.00086 * 240.31767 * 9 8 7 11 11 C 1.37870 * 120.00058 * 60.31305 * 9 8 7 12 12 N 1.31523 * 120.00087 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00260 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46528 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46947 * 120.00258 * 13 11 9 16 16 H 1.48502 * 109.47003 * 240.00395 * 13 11 9 17 17 C 1.53120 * 109.16074 * 57.65262 * 8 7 6 18 18 C 1.46849 * 110.99594 * 176.48307 * 5 4 2 19 19 C 1.52992 * 109.47458 * 119.99716 * 2 1 3 20 20 F 1.39900 * 109.47140 * 60.00469 * 19 2 1 21 21 F 1.39905 * 109.47444 * 180.02562 * 19 2 1 22 22 F 1.39903 * 109.47607 * 300.00567 * 19 2 1 23 23 H 1.08997 * 109.47111 * 299.99294 * 1 2 3 24 24 H 1.08991 * 109.47543 * 59.99915 * 1 2 3 25 25 H 1.09005 * 109.46710 * 180.02562 * 1 2 3 26 26 H 0.96698 * 114.00013 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46931 * 171.63540 * 4 2 1 28 28 H 1.09001 * 109.46687 * 291.63256 * 4 2 1 29 29 H 1.09001 * 109.46320 * 305.85020 * 6 5 4 30 30 H 1.09001 * 109.46859 * 65.82040 * 6 5 4 31 31 H 1.08996 * 109.50351 * 180.87578 * 7 6 5 32 32 H 1.08993 * 109.50635 * 60.75425 * 7 6 5 33 33 H 1.09002 * 109.52385 * 297.75008 * 8 7 6 34 34 H 0.96998 * 119.99798 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.50529 * 182.40087 * 17 8 7 36 36 H 1.09005 * 109.53264 * 62.30783 * 17 8 7 37 37 H 1.09003 * 109.46124 * 294.17455 * 18 5 4 38 38 H 1.09001 * 109.46185 * 54.15513 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.3927 -0.1548 -2.4402 6 6 1.5352 1.3064 -2.4718 7 6 0.7286 1.8736 -3.6422 8 6 1.2393 1.2640 -4.9506 9 6 0.4097 1.7731 -6.1011 10 1 -0.1443 1.0793 -6.7160 11 6 0.3577 3.1246 -6.3685 12 7 1.0326 3.9695 -5.6199 13 14 -0.6712 3.7559 -7.7941 14 1 -1.3287 2.6114 -8.4748 15 1 -1.7073 4.6883 -7.2820 16 1 0.2040 4.4695 -8.7584 17 6 1.1251 -0.2610 -4.8728 18 6 1.9201 -0.7663 -3.6667 19 6 2.0401 -0.7211 1.2492 20 9 1.5739 -2.0402 1.2492 21 9 3.4391 -0.7206 1.2495 22 9 1.5737 -0.0617 2.3915 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9703 1.4238 -0.0004 27 1 3.1197 -0.5935 -1.3272 28 1 1.8039 -1.7829 -1.1777 29 1 1.1646 1.7277 -1.5373 30 1 2.5865 1.5663 -2.5954 31 1 0.8471 2.9567 -3.6747 32 1 -0.3248 1.6259 -3.5122 33 1 2.2821 1.5439 -5.1004 34 1 0.9964 4.9204 -5.8083 35 1 1.5267 -0.7031 -5.7846 36 1 0.0779 -0.5429 -4.7624 37 1 2.9696 -0.4967 -3.7847 38 1 1.8288 -1.8505 -3.6002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397192736.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = -202.066338 kcal Electronic energy + Delta-G solvation = -23913.048198 eV Core-core repulsion = 19954.354811 eV Total energy + Delta-G solvation = -3958.693387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.29188 -47.81171 -47.73487 -39.43840 -37.02511 -33.92080 -32.26991 -30.68979 -29.79570 -27.10127 -26.24735 -24.37580 -22.12857 -21.71574 -20.79090 -18.91517 -18.60943 -18.52347 -18.38984 -16.39024 -16.05040 -15.51219 -15.01008 -14.62059 -14.43356 -14.38152 -14.20908 -14.09626 -13.91944 -13.86289 -13.74113 -13.15458 -12.86978 -12.52477 -12.34170 -12.28245 -12.08210 -11.76126 -11.37757 -11.14806 -10.97491 -10.82334 -10.56459 -10.20189 -10.04039 -9.95762 -9.35822 -8.95697 -8.56794 -8.26269 -7.86674 -5.95746 -4.00983 2.47974 3.31178 3.39453 3.43321 3.47511 3.53368 3.80200 4.19629 4.43117 4.47120 4.57207 4.78351 5.34439 5.39976 5.48074 5.69362 5.70711 5.74254 5.86835 6.12930 6.24264 6.27250 6.37406 6.63908 6.75329 6.86879 7.05579 7.14045 7.19595 7.41746 7.58117 7.64491 7.83497 8.06289 8.18918 8.50158 9.02934 9.63475 11.10367 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.004269 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.724087 B = 6557.728696 C = 6827.554784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.103 3.897 3 O -0.518 6.518 4 C 0.028 3.972 5 N -0.522 5.522 6 C 0.032 3.968 7 C -0.103 4.103 8 C 0.046 3.954 9 C -0.510 4.510 10 H 0.054 0.946 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.286 1.286 17 C -0.105 4.105 18 C 0.059 3.941 19 C 0.424 3.576 20 F -0.179 7.179 21 F -0.187 7.187 22 F -0.176 7.176 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.381 0.619 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.017 0.983 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.019 0.981 34 H 0.258 0.742 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -9.039 13.379 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 O -0.325 6.325 4 C -0.101 4.101 5 N -0.248 5.248 6 C -0.094 4.094 7 C -0.142 4.142 8 C 0.028 3.972 9 C -0.548 4.548 10 H 0.072 0.928 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.717 3.283 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.143 4.143 18 C -0.068 4.068 19 C 0.369 3.631 20 F -0.160 7.160 21 F -0.168 7.168 22 F -0.158 7.158 23 H 0.085 0.915 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.231 0.769 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.036 0.964 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.602 -8.835 13.434 16.158 hybrid contribution 1.227 0.278 -0.530 1.365 sum 2.828 -8.557 12.903 15.739 Atomic orbital electron populations 1.21838 0.88188 1.04136 1.05378 1.22449 0.99059 0.83507 0.89019 1.86795 1.27560 1.22685 1.95506 1.22677 0.96970 0.99673 0.90809 1.62142 1.55469 1.07044 1.00107 1.22933 0.98842 0.85112 1.02512 1.21662 0.97236 1.02577 0.92687 1.18710 0.96491 0.88558 0.93490 1.21244 1.28514 0.91973 1.13069 0.92765 1.24964 0.95614 0.97075 0.96352 1.69891 1.41987 1.02431 1.38773 0.86595 0.80238 0.78861 0.82644 1.19856 1.21077 1.21180 1.21667 0.99053 0.99769 0.93791 1.22150 0.96661 0.97453 0.90545 1.21718 0.75502 0.78214 0.87697 1.93173 1.88384 1.37652 1.96800 1.93166 1.30392 1.96368 1.96892 1.93188 1.88302 1.80639 1.53634 0.91462 0.87508 0.90124 0.76909 0.94054 0.89368 0.88190 0.96426 0.88990 0.94016 0.96296 0.93181 0.93173 0.92412 0.95715 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.14 37.16 0.30 -1.39 16 2 C 0.10 1.25 0.48 -90.62 -0.04 1.21 16 3 O -0.52 -6.53 9.44 -35.23 -0.33 -6.86 16 4 C 0.03 0.36 4.22 -3.82 -0.02 0.35 16 5 N -0.52 -8.52 3.90 -234.67 -0.91 -9.43 16 6 C 0.03 0.60 3.97 -3.84 -0.02 0.58 16 7 C -0.10 -2.38 5.12 -26.65 -0.14 -2.51 16 8 C 0.05 1.12 2.16 -91.65 -0.20 0.93 16 9 C -0.51 -13.87 8.56 -34.44 -0.29 -14.17 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 12 N -0.89 -25.28 11.37 55.43 0.63 -24.65 16 13 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 C -0.10 -2.14 5.32 -26.65 -0.14 -2.28 16 18 C 0.06 1.01 5.46 -3.83 -0.02 0.99 16 19 C 0.42 4.92 2.38 37.15 0.09 5.01 16 20 F -0.18 -2.08 16.14 2.25 0.04 -2.04 16 21 F -0.19 -2.15 16.58 2.25 0.04 -2.11 16 22 F -0.18 -2.17 16.74 2.25 0.04 -2.14 16 23 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 24 H 0.11 1.52 6.34 -51.93 -0.33 1.19 16 25 H 0.08 0.88 7.80 -51.93 -0.41 0.48 16 26 H 0.38 3.73 8.69 46.71 0.41 4.13 16 27 H 0.04 0.52 8.03 -51.93 -0.42 0.11 16 28 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 29 H 0.10 1.75 4.10 -50.86 -0.21 1.54 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -28.28 305.71 -6.06 -34.35 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.57 Total: 1.80 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.57 Total: -9.71 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.28 Total: -34.08 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.33 Total: -6.86 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.28 -6.06 -34.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397192736.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.721 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds